FFCP PHASE1:Hg19::chr7:108165902..108165905,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C656|description=CAGE_peak_at_chr7:108165902..108165905,+|id=chr7:108165902..108165905,+|ontology_enrichment_celltype=CL:0002057!1.35e-82!42;CL:0000860!1.35e-80!45;CL:0000557!1.93e-61!71;CL:0002009!3.77e-58!65;CL:0000766!1.72e-56!76;CL:0000839!7.78e-56!70;CL:0002194!1.71e-53!63;CL:0000576!1.71e-53!63;CL:0000040!1.71e-53!63;CL:0000559!1.71e-53!63;CL:0000763!5.21e-39!112;CL:0000049!5.21e-39!112;CL:0000738!2.54e-37!140;CL:0002031!7.14e-36!124;CL:0002087!7.02e-32!119;CL:0000037!4.91e-28!172;CL:0000566!4.91e-28!172;CL:0002032!6.49e-27!165;CL:0000837!6.49e-27!165;CL:0000988!8.36e-26!182;CL:0002393!2.69e-15!9;CL:0002397!2.69e-15!9;CL:0000134!2.30e-12!358;CL:0002320!7.25e-12!365;CL:0000219!4.04e-10!390;CL:0000623!5.82e-09!3;CL:0000825!5.82e-09!3;CL:0000048!1.24e-08!430;CL:0000723!2.49e-08!436;CL:0000034!6.11e-08!444;CL:0001014!3.57e-07!2;CL:0001016!3.57e-07!2|ontology_enrichment_celltype_v019=CL:0000860;7.34e-50;33!CL:0002057;7.34e-50;33!CL:0000576;5.75e-38;48!CL:0000473;4.09e-33;39!CL:0000234;4.09e-33;39!CL:0002393;6.54e-26;6!CL:0002397;6.54e-26;6!CL:0000766;1.25e-22;69!CL:0002087;5.54e-12;104!CL:0000763;1.09e-11;100|ontology_enrichment_celltype_v019_2=CL:0000860,1.92e-70,42;CL:0002057,1.92e-70,42;CL:0000473,2.47e-61,48;CL:0000234,2.47e-61,48;CL:0002009,1.26e-52,61;CL:0002194,1.42e-48,59;CL:0000576,1.42e-48,59;CL:0000040,1.42e-48,59;CL:0000559,1.42e-48,59;CL:0000557,9.33e-48,67;CL:0000766,3.92e-44,72;CL:0000839,3.10e-43,66;CL:0000763,4.15e-32,108;CL:0000049,4.15e-32,108;CL:0002031,1.12e-25,120;CL:0000738,5.48e-25,136;CL:0002087,7.14e-24,115;CL:0002032,1.06e-20,161;CL:0000837,1.06e-20,161;CL:0000037,1.00e-19,168;CL:0000988,1.38e-18,177;CL:0002393,2.60e-17,9;CL:0002397,2.60e-17,9;CL:0000134,6.59e-09,354;CL:0002320,1.13e-08,361;CL:0000219,7.44e-08,386;CL:0000048,7.57e-07,427|ontology_enrichment_development_v019=CL:0002057;4.69e-51;42!CL:0000049;3.17e-08;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!2.63e-53!80;UBERON:0001474!8.05e-49!86;UBERON:0002390!1.18e-43!102;UBERON:0003061!1.18e-43!102;UBERON:0004765!6.34e-40!101;UBERON:0001434!6.34e-40!101;UBERON:0002193!1.00e-38!112;UBERON:0002405!1.46e-37!115;UBERON:0002204!9.19e-20!167;UBERON:0003081!1.94e-17!216;UBERON:0002384!3.45e-11!375;UBERON:0000926!1.63e-07!448;UBERON:0004120!1.63e-07!448;UBERON:0006603!1.63e-07!448|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.14e-42,76;UBERON:0001474,1.17e-38,82;UBERON:0004765,5.00e-35,90;UBERON:0002405,7.96e-34,93;UBERON:0002390,5.54e-32,98;UBERON:0003061,5.54e-32,98;UBERON:0001434,2.69e-31,100;UBERON:0002193,8.38e-29,108;UBERON:0002204,1.01e-17,167;UBERON:0003081,4.32e-14,203;UBERON:0002384,2.34e-08,371;UBERON:0000926,4.81e-08,315;UBERON:0004120,4.81e-08,315;UBERON:0006603,4.81e-08,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.32397245119126,2.60707781711184,3.47217393145363,0,0,0,0.145398238779565,0,0,0.929716147622738,0.822335776043652,0.309706370895104,1.1507695692886,1.5369642391746,3.78371567821736,1.37898272294647,0.645484683583826,5.41705946377367,0.564727018627814,0,0.224723484445085,1.53041946185451,0.641858054152187,0.639337125799041,0.989553900560148,0.997318288108159,0.426224750532694,3.19230162491442,2.26954089876456,1.86846674698672,0,1.5644487552606,2.17188844705117,1.81619850790011,1.47311054395026,2.53169909952708,0.422510572623884,1.06302149982522,0.209658645508376,0.44931452458598,0.150176892841506,0.64290234678832,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0.432359860250884,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,0.646882724578552,0.128343036279748,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0,0,0.674921674654501,5.41661368190565,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.363697318405119,0.107410557042488,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235676547101626,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr7:108165902..108165905,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C656 | |||
|description=CAGE_peak_at_chr7:108165902..108165905,+ | |||
|id=chr7:108165902..108165905,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.35e-82!42;CL:0000860!1.35e-80!45;CL:0000557!1.93e-61!71;CL:0002009!3.77e-58!65;CL:0000766!1.72e-56!76;CL:0000839!7.78e-56!70;CL:0002194!1.71e-53!63;CL:0000576!1.71e-53!63;CL:0000040!1.71e-53!63;CL:0000559!1.71e-53!63;CL:0000763!5.21e-39!112;CL:0000049!5.21e-39!112;CL:0000738!2.54e-37!140;CL:0002031!7.14e-36!124;CL:0002087!7.02e-32!119;CL:0000037!4.91e-28!172;CL:0000566!4.91e-28!172;CL:0002032!6.49e-27!165;CL:0000837!6.49e-27!165;CL:0000988!8.36e-26!182;CL:0002393!2.69e-15!9;CL:0002397!2.69e-15!9;CL:0000134!2.30e-12!358;CL:0002320!7.25e-12!365;CL:0000219!4.04e-10!390;CL:0000623!5.82e-09!3;CL:0000825!5.82e-09!3;CL:0000048!1.24e-08!430;CL:0000723!2.49e-08!436;CL:0000034!6.11e-08!444;CL:0001014!3.57e-07!2;CL:0001016!3.57e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.34e-50;33!CL:0002057;7.34e-50;33!CL:0000576;5.75e-38;48!CL:0000473;4.09e-33;39!CL:0000234;4.09e-33;39!CL:0002393;6.54e-26;6!CL:0002397;6.54e-26;6!CL:0000766;1.25e-22;69!CL:0002087;5.54e-12;104!CL:0000763;1.09e-11;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.92e-70,42;CL:0002057,1.92e-70,42;CL:0000473,2.47e-61,48;CL:0000234,2.47e-61,48;CL:0002009,1.26e-52,61;CL:0002194,1.42e-48,59;CL:0000576,1.42e-48,59;CL:0000040,1.42e-48,59;CL:0000559,1.42e-48,59;CL:0000557,9.33e-48,67;CL:0000766,3.92e-44,72;CL:0000839,3.10e-43,66;CL:0000763,4.15e-32,108;CL:0000049,4.15e-32,108;CL:0002031,1.12e-25,120;CL:0000738,5.48e-25,136;CL:0002087,7.14e-24,115;CL:0002032,1.06e-20,161;CL:0000837,1.06e-20,161;CL:0000037,1.00e-19,168;CL:0000988,1.38e-18,177;CL:0002393,2.60e-17,9;CL:0002397,2.60e-17,9;CL:0000134,6.59e-09,354;CL:0002320,1.13e-08,361;CL:0000219,7.44e-08,386;CL:0000048,7.57e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;4.69e-51;42!CL:0000049;3.17e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.63e-53!80;UBERON:0001474!8.05e-49!86;UBERON:0002390!1.18e-43!102;UBERON:0003061!1.18e-43!102;UBERON:0004765!6.34e-40!101;UBERON:0001434!6.34e-40!101;UBERON:0002193!1.00e-38!112;UBERON:0002405!1.46e-37!115;UBERON:0002204!9.19e-20!167;UBERON:0003081!1.94e-17!216;UBERON:0002384!3.45e-11!375;UBERON:0000926!1.63e-07!448;UBERON:0004120!1.63e-07!448;UBERON:0006603!1.63e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.14e-42,76;UBERON:0001474,1.17e-38,82;UBERON:0004765,5.00e-35,90;UBERON:0002405,7.96e-34,93;UBERON:0002390,5.54e-32,98;UBERON:0003061,5.54e-32,98;UBERON:0001434,2.69e-31,100;UBERON:0002193,8.38e-29,108;UBERON:0002204,1.01e-17,167;UBERON:0003081,4.32e-14,203;UBERON:0002384,2.34e-08,371;UBERON:0000926,4.81e-08,315;UBERON:0004120,4.81e-08,315;UBERON:0006603,4.81e-08,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.32397245119126,2.60707781711184,3.47217393145363,0,0,0,0.145398238779565,0,0,0.929716147622738,0.822335776043652,0.309706370895104,1.1507695692886,1.5369642391746,3.78371567821736,1.37898272294647,0.645484683583826,5.41705946377367,0.564727018627814,0,0.224723484445085,1.53041946185451,0.641858054152187,0.639337125799041,0.989553900560148,0.997318288108159,0.426224750532694,3.19230162491442,2.26954089876456,1.86846674698672,0,1.5644487552606,2.17188844705117,1.81619850790011,1.47311054395026,2.53169909952708,0.422510572623884,1.06302149982522,0.209658645508376,0.44931452458598,0.150176892841506,0.64290234678832,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0.432359860250884,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,0.646882724578552,0.128343036279748,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0,0,0.674921674654501,5.41661368190565,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.363697318405119,0.107410557042488,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235676547101626,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr7:108165902..108165905,+ | |||
}} |
Revision as of 22:42, 13 September 2013
Short description: | p@chr7:108165902..108165905, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:108165902..108165905, + |
Coexpression cluster: | C656_CD14_immature_Dendritic_Basophils_CD34_CD133_CD19 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.92e-70 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.92e-70 | 42 |
defensive cell | 2.47e-61 | 48 |
phagocyte | 2.47e-61 | 48 |
macrophage dendritic cell progenitor | 1.26e-52 | 61 |
monopoietic cell | 1.42e-48 | 59 |
monocyte | 1.42e-48 | 59 |
monoblast | 1.42e-48 | 59 |
promonocyte | 1.42e-48 | 59 |
granulocyte monocyte progenitor cell | 9.33e-48 | 67 |
myeloid leukocyte | 3.92e-44 | 72 |
myeloid lineage restricted progenitor cell | 3.10e-43 | 66 |
myeloid cell | 4.15e-32 | 108 |
common myeloid progenitor | 4.15e-32 | 108 |
hematopoietic lineage restricted progenitor cell | 1.12e-25 | 120 |
leukocyte | 5.48e-25 | 136 |
nongranular leukocyte | 7.14e-24 | 115 |
hematopoietic oligopotent progenitor cell | 1.06e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.06e-20 | 161 |
hematopoietic stem cell | 1.00e-19 | 168 |
hematopoietic cell | 1.38e-18 | 177 |
intermediate monocyte | 2.60e-17 | 9 |
CD14-positive, CD16-positive monocyte | 2.60e-17 | 9 |
mesenchymal cell | 6.59e-09 | 354 |
connective tissue cell | 1.13e-08 | 361 |
motile cell | 7.44e-08 | 386 |
multi fate stem cell | 7.57e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.14e-42 | 76 |
bone element | 1.17e-38 | 82 |
skeletal element | 5.00e-35 | 90 |
immune system | 7.96e-34 | 93 |
hematopoietic system | 5.54e-32 | 98 |
blood island | 5.54e-32 | 98 |
skeletal system | 2.69e-31 | 100 |
hemolymphoid system | 8.38e-29 | 108 |
musculoskeletal system | 1.01e-17 | 167 |
lateral plate mesoderm | 4.32e-14 | 203 |
connective tissue | 2.34e-08 | 371 |
mesoderm | 4.81e-08 | 315 |
mesoderm-derived structure | 4.81e-08 | 315 |
presumptive mesoderm | 4.81e-08 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.