FFCP PHASE1:Hg19::chr7:100240328..100240342,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7036|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11762|TSSclassifier=S|UniProt=Q9UP52|association_with_transcript=1bp_to_ENST00000462107_5end|coexpression_cluster_id=C5|description=CAGE_peak_2_at_TFR2_5end|id=chr7:100240328..100240342,-|ontology_enrichment_celltype=CL:0000181!5.17e-15!12;CL:0000417!5.17e-15!12;CL:0000668!5.17e-15!12;CL:0000414!5.17e-15!12;CL:0000412!5.17e-15!12;CL:0000182!5.17e-15!12;CL:0000764!1.81e-11!2;CL:0000765!1.81e-11!2;CL:0000050!1.81e-11!2;CL:0000038!1.81e-11!2;CL:0000558!1.81e-11!2;CL:0000547!1.81e-11!2;CL:0000549!1.81e-11!2;CL:0000550!1.81e-11!2;CL:0000552!1.81e-11!2|ontology_enrichment_celltype_v019=CL:0000182;1.57e-29;12!CL:0000764;3.84e-21;2!CL:0000558;3.84e-21;2|ontology_enrichment_celltype_v019_2=CL:0000182,1.61e-29,12;CL:0000764,3.84e-21,2;CL:0000765,3.84e-21,2;CL:0000050,3.84e-21,2;CL:0000038,3.84e-21,2;CL:0000558,3.84e-21,2;CL:0000547,3.84e-21,2;CL:0000549,3.84e-21,2;CL:0000550,3.84e-21,2;CL:0000552,3.84e-21,2|ontology_enrichment_development_v019=UBERON:0004161;2.14e-22;11!UBERON:0009497;5.98e-19;13!UBERON:0001041;3.70e-08;30!UBERON:0003104;6.81e-08;31|ontology_enrichment_disease=DOID:1036!3.19e-22!8;DOID:8692!2.45e-14!31;DOID:1240!5.19e-11!39;DOID:2531!1.17e-09!51;DOID:0060083!1.17e-09!51|ontology_enrichment_disease_v019=DOID:1036;4.42e-20;8!DOID:8692;1.81e-11;31!DOID:1240;2.10e-08;39|ontology_enrichment_disease_v019_2=DOID:1036,4.88e-20,8;DOID:8692,4.45e-11,31;DOID:1240,1.01e-08,39|ontology_enrichment_uberon=UBERON:0005057!8.41e-18!26;UBERON:0002107!2.55e-16!19;UBERON:0006925!2.55e-16!19;UBERON:0008836!2.55e-16!19;UBERON:0009497!3.90e-15!25;UBERON:0000015!3.90e-15!25;UBERON:0002423!3.90e-15!25;UBERON:0006235!3.90e-15!25;UBERON:0004161!3.90e-15!25;UBERON:0008835!6.48e-14!22;UBERON:0003894!6.48e-14!22;UBERON:0009854!2.98e-13!23;UBERON:0007499!4.36e-12!25;UBERON:0009856!1.43e-11!26;UBERON:0002368!2.67e-10!35;UBERON:0002365!1.70e-09!31;UBERON:0002330!1.70e-09!31;UBERON:0003929!3.95e-09!54;UBERON:0000949!1.16e-07!45;UBERON:0005172!1.86e-07!55;UBERON:0005173!1.86e-07!55|ontology_enrichment_uberon_v019=UBERON:0002107;7.49e-33;19!UBERON:0006925;7.49e-33;19!UBERON:0002423;9.10e-25;25!UBERON:0002365;4.36e-19;31!UBERON:0002330;4.36e-19;31!UBERON:0002368;7.76e-17;33!UBERON:0000949;2.37e-12;43!UBERON:0005172;4.42e-09;52!UBERON:0005173;4.42e-09;52!UBERON:0002417;9.44e-08;58!UBERON:0000916;9.44e-08;58|ontology_enrichment_uberon_v019_2=UBERON:0002107,7.65e-33,19;UBERON:0006925,7.65e-33,19;UBERON:0008836,7.65e-33,19;UBERON:0008835,2.98e-28,22;UBERON:0003894,2.98e-28,22;UBERON:0009854,5.48e-27,23;UBERON:0007499,9.24e-25,25;UBERON:0009497,9.24e-25,25;UBERON:0000015,9.24e-25,25;UBERON:0002423,9.24e-25,25;UBERON:0006235,9.24e-25,25;UBERON:0004161,9.24e-25,25;UBERON:0009856,8.94e-24,26;UBERON:0002365,8.45e-20,31;UBERON:0002330,8.45e-20,31;UBERON:0002368,1.96e-17,35;UBERON:0005172,8.07e-14,54;UBERON:0005173,8.07e-14,54;UBERON:0000949,2.36e-13,45;UBERON:0002417,2.56e-12,60;UBERON:0000916,2.56e-12,60;UBERON:0003929,5.70e-11,54;UBERON:0002530,5.85e-10,59;UBERON:0001041,4.03e-08,87;UBERON:0005911,6.83e-07,82;UBERON:0005177,7.94e-07,101|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,119.149732732521,53.0726697005918,88.6184860022106,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8400333388805,18.5619170227679,0,0,0,24.0085557139193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.8539634050697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.842391534340376,0,0,0,0,0,0,0,0,0,0,0,0,2.78406173895242,0,0,0,2.81974010175699,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,3.87733098438087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.997270091400938,3.15833924864053,4.90156335794349,3.02078856556517,2.65655225813859,0.953619473882272,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.53746777989381,0,0,1.49688046383725,1.64831716762333,1.41547442093788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410462603746695,0,0,70.6381766328357,37.101928895422,0,0,0,0,0,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,1.61144719933943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p2@TFR2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=7036 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11762 | |||
|TSSclassifier=S | |||
|UniProt=Q9UP52 | |||
|association_with_transcript=1bp_to_ENST00000462107_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_2_at_TFR2_5end | |||
|id=chr7:100240328..100240342,- | |||
|ontology_enrichment_celltype=CL:0000181!5.17e-15!12;CL:0000417!5.17e-15!12;CL:0000668!5.17e-15!12;CL:0000414!5.17e-15!12;CL:0000412!5.17e-15!12;CL:0000182!5.17e-15!12;CL:0000764!1.81e-11!2;CL:0000765!1.81e-11!2;CL:0000050!1.81e-11!2;CL:0000038!1.81e-11!2;CL:0000558!1.81e-11!2;CL:0000547!1.81e-11!2;CL:0000549!1.81e-11!2;CL:0000550!1.81e-11!2;CL:0000552!1.81e-11!2 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.57e-29;12!CL:0000764;3.84e-21;2!CL:0000558;3.84e-21;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.61e-29,12;CL:0000764,3.84e-21,2;CL:0000765,3.84e-21,2;CL:0000050,3.84e-21,2;CL:0000038,3.84e-21,2;CL:0000558,3.84e-21,2;CL:0000547,3.84e-21,2;CL:0000549,3.84e-21,2;CL:0000550,3.84e-21,2;CL:0000552,3.84e-21,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.14e-22;11!UBERON:0009497;5.98e-19;13!UBERON:0001041;3.70e-08;30!UBERON:0003104;6.81e-08;31 | |||
|ontology_enrichment_disease=DOID:1036!3.19e-22!8;DOID:8692!2.45e-14!31;DOID:1240!5.19e-11!39;DOID:2531!1.17e-09!51;DOID:0060083!1.17e-09!51 | |||
|ontology_enrichment_disease_v019=DOID:1036;4.42e-20;8!DOID:8692;1.81e-11;31!DOID:1240;2.10e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,4.88e-20,8;DOID:8692,4.45e-11,31;DOID:1240,1.01e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0005057!8.41e-18!26;UBERON:0002107!2.55e-16!19;UBERON:0006925!2.55e-16!19;UBERON:0008836!2.55e-16!19;UBERON:0009497!3.90e-15!25;UBERON:0000015!3.90e-15!25;UBERON:0002423!3.90e-15!25;UBERON:0006235!3.90e-15!25;UBERON:0004161!3.90e-15!25;UBERON:0008835!6.48e-14!22;UBERON:0003894!6.48e-14!22;UBERON:0009854!2.98e-13!23;UBERON:0007499!4.36e-12!25;UBERON:0009856!1.43e-11!26;UBERON:0002368!2.67e-10!35;UBERON:0002365!1.70e-09!31;UBERON:0002330!1.70e-09!31;UBERON:0003929!3.95e-09!54;UBERON:0000949!1.16e-07!45;UBERON:0005172!1.86e-07!55;UBERON:0005173!1.86e-07!55 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;7.49e-33;19!UBERON:0006925;7.49e-33;19!UBERON:0002423;9.10e-25;25!UBERON:0002365;4.36e-19;31!UBERON:0002330;4.36e-19;31!UBERON:0002368;7.76e-17;33!UBERON:0000949;2.37e-12;43!UBERON:0005172;4.42e-09;52!UBERON:0005173;4.42e-09;52!UBERON:0002417;9.44e-08;58!UBERON:0000916;9.44e-08;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,7.65e-33,19;UBERON:0006925,7.65e-33,19;UBERON:0008836,7.65e-33,19;UBERON:0008835,2.98e-28,22;UBERON:0003894,2.98e-28,22;UBERON:0009854,5.48e-27,23;UBERON:0007499,9.24e-25,25;UBERON:0009497,9.24e-25,25;UBERON:0000015,9.24e-25,25;UBERON:0002423,9.24e-25,25;UBERON:0006235,9.24e-25,25;UBERON:0004161,9.24e-25,25;UBERON:0009856,8.94e-24,26;UBERON:0002365,8.45e-20,31;UBERON:0002330,8.45e-20,31;UBERON:0002368,1.96e-17,35;UBERON:0005172,8.07e-14,54;UBERON:0005173,8.07e-14,54;UBERON:0000949,2.36e-13,45;UBERON:0002417,2.56e-12,60;UBERON:0000916,2.56e-12,60;UBERON:0003929,5.70e-11,54;UBERON:0002530,5.85e-10,59;UBERON:0001041,4.03e-08,87;UBERON:0005911,6.83e-07,82;UBERON:0005177,7.94e-07,101 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,119.149732732521,53.0726697005918,88.6184860022106,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8400333388805,18.5619170227679,0,0,0,24.0085557139193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.8539634050697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.842391534340376,0,0,0,0,0,0,0,0,0,0,0,0,2.78406173895242,0,0,0,2.81974010175699,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,3.87733098438087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.997270091400938,3.15833924864053,4.90156335794349,3.02078856556517,2.65655225813859,0.953619473882272,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.53746777989381,0,0,1.49688046383725,1.64831716762333,1.41547442093788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410462603746695,0,0,70.6381766328357,37.101928895422,0,0,0,0,0,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,1.61144719933943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@TFR2 | |||
}} |
Revision as of 22:16, 13 September 2013
Short description: | p2@TFR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TFR2_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 1bp_to_ENST00000462107_5end |
EntrezGene: | TFR2 |
HGNC: | 11762 |
UniProt: | Q9UP52 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.61e-29 | 12 |
erythroid lineage cell | 3.84e-21 | 2 |
erythroblast | 3.84e-21 | 2 |
megakaryocyte-erythroid progenitor cell | 3.84e-21 | 2 |
erythroid progenitor cell | 3.84e-21 | 2 |
reticulocyte | 3.84e-21 | 2 |
proerythroblast | 3.84e-21 | 2 |
basophilic erythroblast | 3.84e-21 | 2 |
polychromatophilic erythroblast | 3.84e-21 | 2 |
orthochromatic erythroblast | 3.84e-21 | 2 |
Ontology term | p-value | n |
---|---|---|
liver | 7.65e-33 | 19 |
digestive gland | 7.65e-33 | 19 |
liver bud | 7.65e-33 | 19 |
hepatic diverticulum | 2.98e-28 | 22 |
liver primordium | 2.98e-28 | 22 |
digestive tract diverticulum | 5.48e-27 | 23 |
epithelial sac | 9.24e-25 | 25 |
epithelium of foregut-midgut junction | 9.24e-25 | 25 |
anatomical boundary | 9.24e-25 | 25 |
hepatobiliary system | 9.24e-25 | 25 |
foregut-midgut junction | 9.24e-25 | 25 |
septum transversum | 9.24e-25 | 25 |
sac | 8.94e-24 | 26 |
exocrine gland | 8.45e-20 | 31 |
exocrine system | 8.45e-20 | 31 |
endocrine gland | 1.96e-17 | 35 |
abdomen element | 8.07e-14 | 54 |
abdominal segment element | 8.07e-14 | 54 |
endocrine system | 2.36e-13 | 45 |
abdominal segment of trunk | 2.56e-12 | 60 |
abdomen | 2.56e-12 | 60 |
gut epithelium | 5.70e-11 | 54 |
gland | 5.85e-10 | 59 |
foregut | 4.03e-08 | 87 |
endo-epithelium | 6.83e-07 | 82 |
trunk region element | 7.94e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 4.88e-20 | 8 |
myeloid leukemia | 4.45e-11 | 31 |
leukemia | 1.01e-08 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.