FFCP PHASE1:Mm9::chr2:113839356..113839374,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=14617|HGNC=|MCL_coexpression_id=1702|UniProt=O54851|association_with_transcript=-1bp_to_ENSMUST00000090275,NM_010290,uc008lpu.1_5end|description=CAGE_peak_1_at_Gjd2_5end|id=chr2:113839356..113839374,-|ontology_enrichment_celltype=CL:0000540!4.37e-18!33;CL:0000047!4.37e-18!33;CL:0000031!4.37e-18!33;CL:0000404!4.37e-18!33;CL:0000393!6.01e-13!39;CL:0000211!6.01e-13!39;CL:0000117!2.43e-12!23;CL:0000337!2.43e-12!23;CL:0000221!5.60e-11!44;CL:0000133!5.60e-11!44;CL:0002319!5.82e-11!43;CL:0000055!1.42e-07!50;CL:0000107!4.63e-07!9|ontology_enrichment_celltype_v019_2=CL:0000540,3.84e-16,33;CL:0000047,3.84e-16,33;CL:0000031,3.84e-16,33;CL:0000404,3.84e-16,33;CL:0000393,5.45e-12,39;CL:0000211,5.45e-12,39;CL:0000117,2.34e-10,23;CL:0000337,2.34e-10,23;CL:0002319,6.33e-10,43;CL:0000221,1.78e-09,44;CL:0000133,1.78e-09,44;CL:0000107,3.54e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.24e-29!71;UBERON:0003075!3.24e-29!71;UBERON:0007284!3.24e-29!71;UBERON:0001017!6.60e-29!73;UBERON:0005743!6.60e-29!73;UBERON:0004121!1.18e-27!102;UBERON:0000924!1.18e-27!102;UBERON:0006601!1.18e-27!102;UBERON:0000073!2.59e-27!75;UBERON:0001016!2.59e-27!75;UBERON:0001049!2.51e-20!52;UBERON:0005068!2.51e-20!52;UBERON:0006241!2.51e-20!52;UBERON:0007135!2.51e-20!52;UBERON:0000033!4.38e-19!63;UBERON:0000955!4.47e-18!50;UBERON:0006238!4.47e-18!50;UBERON:0002616!2.43e-17!49;UBERON:0003056!3.43e-17!49;UBERON:0003080!5.74e-15!40;UBERON:0002780!2.01e-14!39;UBERON:0001890!2.01e-14!39;UBERON:0006240!2.01e-14!39;UBERON:0002020!3.19e-14!34;UBERON:0002791!1.80e-10!29;UBERON:0003528!1.80e-10!29;UBERON:0001893!1.80e-10!29;UBERON:0007811!4.54e-09!86;UBERON:0000153!4.01e-07!94;UBERON:0002410!4.63e-07!9;UBERON:0002342!6.32e-07!10;UBERON:0005062!6.32e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.12e-27,73;UBERON:0001016,2.42e-26,75;UBERON:0002346,5.10e-23,64;UBERON:0003075,5.10e-23,64;UBERON:0007284,5.10e-23,64;UBERON:0004121,1.65e-22,95;UBERON:0000924,1.65e-22,95;UBERON:0006601,1.65e-22,95;UBERON:0000073,8.21e-20,54;UBERON:0001049,1.19e-18,52;UBERON:0005068,1.19e-18,52;UBERON:0006241,1.19e-18,52;UBERON:0007135,1.19e-18,52;UBERON:0010371,7.48e-18,73;UBERON:0010314,1.48e-16,92;UBERON:0000955,1.57e-14,47;UBERON:0006238,1.57e-14,47;UBERON:0003056,4.51e-14,49;UBERON:0002616,9.37e-14,46;UBERON:0002020,1.75e-12,34;UBERON:0003080,2.47e-12,40;UBERON:0002780,9.55e-12,39;UBERON:0001890,9.55e-12,39;UBERON:0006240,9.55e-12,39;UBERON:0003528,1.80e-08,29;UBERON:0002791,1.80e-08,29;UBERON:0001893,1.80e-08,29;UBERON:0002410,3.54e-08,9;UBERON:0003076,2.07e-07,12;UBERON:0003057,2.07e-07,12;UBERON:0002420,5.22e-07,8;UBERON:0007245,5.22e-07,8;UBERON:0010009,5.22e-07,8;UBERON:0010011,5.22e-07,8;UBERON:0000454,5.22e-07,8;UBERON:0002240,6.21e-07,6;UBERON:0005174,6.21e-07,6;UBERON:0001137,6.21e-07,6|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7227724255587,7.93486468908049,16.4796164911607,0,0,0,0,0,0.299600110518405,0,0.622137673850866,0.540023753326763,0.841299845405528,33.9924671440526,35.3389665522582,0.979926393719632,0.766763768145891,3.67687514644008,5.50579404996943,3.06449611404451,3.84016333140609,15.5625819521629,10.6125666578795,13.5437476344758,3.90856198601933,5.06486349028512,3.36156145108982,41.5426305517871,23.9184423742493,19.0127434741807,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0,0.34255163915718,0,2.52351636410202,6.07198643681475,13.3964810457342,5.99600292865752,8.89263579260473,6.46737889246376,1.13099932196708,0,0,0,0,0,0,0,3.80615036115011,5.86450779077674,0,0,0,0,4.79330046095433,3.66000482254901,7.79056983099759,3.82413504423008,3.83573185995496,4.57133698031032,3.56930778749067,0.101839363850316,0,0,11.7847439296425,0,0.459804208866946,0.180062129805349,1.65775299619287,2.31324097114515,4.35586648968489,6.65282244374075,51.4819707770641,0,0,0,0.876782929710299,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0.393528463494808,0.154267112887378,0,0,0,0,0,0,0,0,0,2.10289948564127,5.45394445610208,0,0.264450566663544,0.639864751605702,3.0190767341857,1.41754207454303,1.00841762311671,0.667134131534611,1.33157938278791,0,1.15289268306808,0.502670417600539,0.397912944082302,0.58489226135736,0,0,0.597423819763102,0.948339504765408,1.37098215131675,0,0,0,0.350679099451593,0,0,0,0,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.325929952884052,0,0,0.167506257441816,0.476087281772027,0,0,0,0,0,0,0,0,0,0,0,6.90367536947505,10.5490517932983,0,0,10.0962630213202,7.80877488593277,20.0343759891503,2.62865677747807,3.7875774594007,6.51076020814315,10.1202675418724,13.7360253218317,12.2539211163422,12.8528526568723,0,0,0,0,1.32745138339963,2.6705869977048,2.72091201268276,3.58349651536206,3.54362271456927,3.68922177532713,2.32585463851399,3.27180356529755,2.49548164869305,2.52829406348653,0,0,2.38307724027652,0.18006109403131,0.905510786479282,4.71541477069503,6.20690817747958,6.95638388648075,3.62007845324666,8.82948352432338,0,0,0,0,0,0,0,0,0,4.63563255026274,0,0,0,0,0,0,0,0,0,0,0.632671987162271,2.43983360552218,1.18805874903981,1.46361807210128,1.9652630737156,0.944050424693745,0.826534557253359,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358053391334963,0.198681354781265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2950368523413,5.06357760157895,6.30185064783336,10.998603669996,4.11049511862385,2.2661816921691,4.72515750162264,0.900642406448441,2.71885445390523,6.73088405277366,0.726511433089237,0.798049746802062,0.853668028770671,1.94485373654635,1.46729213839588,3.30918315210025,2.44471400581777,3.09052585858341,0.962757628775446,1.76888048234658,2.5347929989024,1.88626341386076,2.34103768674706,2.17685518176556,1.66562859971278,2.38146845641537,2.78122382267653,1.54327376370964,2.47251540481984,1.61918812147837,2.05721551431249,2.12970967391205,1.90748951957857,1.16277133305863,2.35273451038327,1.69229215783353,2.0122077016005,1.31534855718921,1.49384525230448,1.68342681497322,2.01679530811096,1.67457620038458,1.22769312950907,1.54936841185966,2.12197272079256,5.74564329257276,2.10538447600868,1.28922632428979,1.3390183244819,0.661774257358546,1.39120701372253|short_description=p1@Gjd2}} | ||
|EntrezGene=14617 | |||
|HGNC= | |||
|MCL_coexpression_id=1702 | |||
|UniProt=O54851 | |||
|association_with_transcript=-1bp_to_ENSMUST00000090275,NM_010290,uc008lpu.1_5end | |||
|description=CAGE_peak_1_at_Gjd2_5end | |||
|id=chr2:113839356..113839374,- | |||
|ontology_enrichment_celltype=CL:0000540!4.37e-18!33;CL:0000047!4.37e-18!33;CL:0000031!4.37e-18!33;CL:0000404!4.37e-18!33;CL:0000393!6.01e-13!39;CL:0000211!6.01e-13!39;CL:0000117!2.43e-12!23;CL:0000337!2.43e-12!23;CL:0000221!5.60e-11!44;CL:0000133!5.60e-11!44;CL:0002319!5.82e-11!43;CL:0000055!1.42e-07!50;CL:0000107!4.63e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.84e-16,33;CL:0000047,3.84e-16,33;CL:0000031,3.84e-16,33;CL:0000404,3.84e-16,33;CL:0000393,5.45e-12,39;CL:0000211,5.45e-12,39;CL:0000117,2.34e-10,23;CL:0000337,2.34e-10,23;CL:0002319,6.33e-10,43;CL:0000221,1.78e-09,44;CL:0000133,1.78e-09,44;CL:0000107,3.54e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.24e-29!71;UBERON:0003075!3.24e-29!71;UBERON:0007284!3.24e-29!71;UBERON:0001017!6.60e-29!73;UBERON:0005743!6.60e-29!73;UBERON:0004121!1.18e-27!102;UBERON:0000924!1.18e-27!102;UBERON:0006601!1.18e-27!102;UBERON:0000073!2.59e-27!75;UBERON:0001016!2.59e-27!75;UBERON:0001049!2.51e-20!52;UBERON:0005068!2.51e-20!52;UBERON:0006241!2.51e-20!52;UBERON:0007135!2.51e-20!52;UBERON:0000033!4.38e-19!63;UBERON:0000955!4.47e-18!50;UBERON:0006238!4.47e-18!50;UBERON:0002616!2.43e-17!49;UBERON:0003056!3.43e-17!49;UBERON:0003080!5.74e-15!40;UBERON:0002780!2.01e-14!39;UBERON:0001890!2.01e-14!39;UBERON:0006240!2.01e-14!39;UBERON:0002020!3.19e-14!34;UBERON:0002791!1.80e-10!29;UBERON:0003528!1.80e-10!29;UBERON:0001893!1.80e-10!29;UBERON:0007811!4.54e-09!86;UBERON:0000153!4.01e-07!94;UBERON:0002410!4.63e-07!9;UBERON:0002342!6.32e-07!10;UBERON:0005062!6.32e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.12e-27,73;UBERON:0001016,2.42e-26,75;UBERON:0002346,5.10e-23,64;UBERON:0003075,5.10e-23,64;UBERON:0007284,5.10e-23,64;UBERON:0004121,1.65e-22,95;UBERON:0000924,1.65e-22,95;UBERON:0006601,1.65e-22,95;UBERON:0000073,8.21e-20,54;UBERON:0001049,1.19e-18,52;UBERON:0005068,1.19e-18,52;UBERON:0006241,1.19e-18,52;UBERON:0007135,1.19e-18,52;UBERON:0010371,7.48e-18,73;UBERON:0010314,1.48e-16,92;UBERON:0000955,1.57e-14,47;UBERON:0006238,1.57e-14,47;UBERON:0003056,4.51e-14,49;UBERON:0002616,9.37e-14,46;UBERON:0002020,1.75e-12,34;UBERON:0003080,2.47e-12,40;UBERON:0002780,9.55e-12,39;UBERON:0001890,9.55e-12,39;UBERON:0006240,9.55e-12,39;UBERON:0003528,1.80e-08,29;UBERON:0002791,1.80e-08,29;UBERON:0001893,1.80e-08,29;UBERON:0002410,3.54e-08,9;UBERON:0003076,2.07e-07,12;UBERON:0003057,2.07e-07,12;UBERON:0002420,5.22e-07,8;UBERON:0007245,5.22e-07,8;UBERON:0010009,5.22e-07,8;UBERON:0010011,5.22e-07,8;UBERON:0000454,5.22e-07,8;UBERON:0002240,6.21e-07,6;UBERON:0005174,6.21e-07,6;UBERON:0001137,6.21e-07,6 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7227724255587,7.93486468908049,16.4796164911607,0,0,0,0,0,0.299600110518405,0,0.622137673850866,0.540023753326763,0.841299845405528,33.9924671440526,35.3389665522582,0.979926393719632,0.766763768145891,3.67687514644008,5.50579404996943,3.06449611404451,3.84016333140609,15.5625819521629,10.6125666578795,13.5437476344758,3.90856198601933,5.06486349028512,3.36156145108982,41.5426305517871,23.9184423742493,19.0127434741807,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0,0.34255163915718,0,2.52351636410202,6.07198643681475,13.3964810457342,5.99600292865752,8.89263579260473,6.46737889246376,1.13099932196708,0,0,0,0,0,0,0,3.80615036115011,5.86450779077674,0,0,0,0,4.79330046095433,3.66000482254901,7.79056983099759,3.82413504423008,3.83573185995496,4.57133698031032,3.56930778749067,0.101839363850316,0,0,11.7847439296425,0,0.459804208866946,0.180062129805349,1.65775299619287,2.31324097114515,4.35586648968489,6.65282244374075,51.4819707770641,0,0,0,0.876782929710299,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0.393528463494808,0.154267112887378,0,0,0,0,0,0,0,0,0,2.10289948564127,5.45394445610208,0,0.264450566663544,0.639864751605702,3.0190767341857,1.41754207454303,1.00841762311671,0.667134131534611,1.33157938278791,0,1.15289268306808,0.502670417600539,0.397912944082302,0.58489226135736,0,0,0.597423819763102,0.948339504765408,1.37098215131675,0,0,0,0.350679099451593,0,0,0,0,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.325929952884052,0,0,0.167506257441816,0.476087281772027,0,0,0,0,0,0,0,0,0,0,0,6.90367536947505,10.5490517932983,0,0,10.0962630213202,7.80877488593277,20.0343759891503,2.62865677747807,3.7875774594007,6.51076020814315,10.1202675418724,13.7360253218317,12.2539211163422,12.8528526568723,0,0,0,0,1.32745138339963,2.6705869977048,2.72091201268276,3.58349651536206,3.54362271456927,3.68922177532713,2.32585463851399,3.27180356529755,2.49548164869305,2.52829406348653,0,0,2.38307724027652,0.18006109403131,0.905510786479282,4.71541477069503,6.20690817747958,6.95638388648075,3.62007845324666,8.82948352432338,0,0,0,0,0,0,0,0,0,4.63563255026274,0,0,0,0,0,0,0,0,0,0,0.632671987162271,2.43983360552218,1.18805874903981,1.46361807210128,1.9652630737156,0.944050424693745,0.826534557253359,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358053391334963,0.198681354781265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2950368523413,5.06357760157895,6.30185064783336,10.998603669996,4.11049511862385,2.2661816921691,4.72515750162264,0.900642406448441,2.71885445390523,6.73088405277366,0.726511433089237,0.798049746802062,0.853668028770671,1.94485373654635,1.46729213839588,3.30918315210025,2.44471400581777,3.09052585858341,0.962757628775446,1.76888048234658,2.5347929989024,1.88626341386076,2.34103768674706,2.17685518176556,1.66562859971278,2.38146845641537,2.78122382267653,1.54327376370964,2.47251540481984,1.61918812147837,2.05721551431249,2.12970967391205,1.90748951957857,1.16277133305863,2.35273451038327,1.69229215783353,2.0122077016005,1.31534855718921,1.49384525230448,1.68342681497322,2.01679530811096,1.67457620038458,1.22769312950907,1.54936841185966,2.12197272079256,5.74564329257276,2.10538447600868,1.28922632428979,1.3390183244819,0.661774257358546,1.39120701372253 | |||
|short_description=p1@Gjd2 | |||
}} |
Revision as of 21:39, 13 September 2013
Short description: | p1@Gjd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gjd2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1702 |
Association with transcript: | -1bp_to_ENSMUST00000090275, NM_010290, uc008lpu.1_5end |
EntrezGene: | Gjd2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.84e-16 | 33 |
neuronal stem cell | 3.84e-16 | 33 |
neuroblast | 3.84e-16 | 33 |
electrically signaling cell | 3.84e-16 | 33 |
electrically responsive cell | 5.45e-12 | 39 |
electrically active cell | 5.45e-12 | 39 |
CNS neuron (sensu Vertebrata) | 2.34e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.34e-10 | 23 |
neural cell | 6.33e-10 | 43 |
ectodermal cell | 1.78e-09 | 44 |
neurectodermal cell | 1.78e-09 | 44 |
autonomic neuron | 3.54e-08 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.