FFCP PHASE1:Mm9::chr1:72629819..72629856,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=54380|HGNC=|UniProt=Q8BJL0,D3YUY9,D3YUX5,D3Z0J8|association_with_transcript=0bp_to_ENSMUST00000047615,ENSMUST00000132336,ENSMUST00000133123,ENSMUST00000136498,ENSMUST00000145868,ENSMUST00000152814,ENSMUST00000156797,NM_018817,uc007bko.2,uc007bkp.2,uc007bkq.2,uc007bkr.2,uc007bks.2_5end|description=CAGE_peak_1_at_Smarcal1_5end|id=chr1:72629819..72629856,+|ontology_enrichment_celltype=CL:0000117!6.43e-10!23;CL:0000337!6.43e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,6.43e-10,23;CL:0000337,6.43e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.46e-15!71;UBERON:0003075!2.46e-15!71;UBERON:0007284!2.46e-15!71;UBERON:0000033!4.18e-15!63;UBERON:0000153!3.82e-14!94;UBERON:0000955!5.44e-14!50;UBERON:0006238!5.44e-14!50;UBERON:0001049!1.22e-13!52;UBERON:0005068!1.22e-13!52;UBERON:0006241!1.22e-13!52;UBERON:0007135!1.22e-13!52;UBERON:0002616!2.07e-13!49;UBERON:0003056!3.09e-13!49;UBERON:0007811!3.54e-12!86;UBERON:0001017!5.00e-11!73;UBERON:0005743!5.00e-11!73;UBERON:0003080!6.61e-11!40;UBERON:0002780!2.52e-10!39;UBERON:0001890!2.52e-10!39;UBERON:0006240!2.52e-10!39;UBERON:0000073!2.84e-10!75;UBERON:0001016!2.84e-10!75;UBERON:0004121!8.21e-10!102;UBERON:0000924!8.21e-10!102;UBERON:0006601!8.21e-10!102;UBERON:0002020!9.81e-10!34;UBERON:0002791!1.22e-08!29;UBERON:0003528!1.22e-08!29;UBERON:0001893!1.22e-08!29|ontology_enrichment_uberon_v019_2=UBERON:0002346,8.58e-15,64;UBERON:0003075,8.58e-15,64;UBERON:0007284,8.58e-15,64;UBERON:0000073,1.23e-14,54;UBERON:0010314,3.88e-14,92;UBERON:0001049,1.22e-13,52;UBERON:0005068,1.22e-13,52;UBERON:0006241,1.22e-13,52;UBERON:0007135,1.22e-13,52;UBERON:0003056,3.09e-13,49;UBERON:0000955,2.07e-12,47;UBERON:0006238,2.07e-12,47;UBERON:0002616,7.54e-12,46;UBERON:0001017,5.00e-11,73;UBERON:0010371,5.91e-11,73;UBERON:0003080,6.61e-11,40;UBERON:0002780,2.52e-10,39;UBERON:0001890,2.52e-10,39;UBERON:0006240,2.52e-10,39;UBERON:0001016,2.84e-10,75;UBERON:0002020,9.81e-10,34;UBERON:0004121,4.37e-09,95;UBERON:0000924,4.37e-09,95;UBERON:0006601,4.37e-09,95;UBERON:0003528,1.22e-08,29;UBERON:0002791,1.22e-08,29;UBERON:0001893,1.22e-08,29|phase1_expression=15.0539916278506,2.09385244583617,1.81999695755814,2.41971369045464,2.00358291978539,6.21153306073992,7.70921713965235,16.9151553708465,2.39340827657833,3.04283884218592,11.3003859028833,13.7208113471979,15.0656642339461,18.4457049104085,7.66152452176024,18.8301998672538,8.39474253753776,22.3978137404349,27.285772287542,18.6731446791133,17.9441342218757,17.3759164601549,12.27639008953,7.35965144849671,6.19405058881359,2.29692785646008,3.01533397311352,4.09395342103189,5.89072600314759,5.29263272495855,4.43461021310609,12.7006134691926,15.9916844771988,15.8481681015439,11.2652131702997,8.14549762256613,7.55426618170766,11.3003540298965,17.9707129240474,18.3233310390829,11.1763982725893,12.294818729252,19.4204141212461,17.2478640626541,16.1189320639028,10.8292583775392,8.60630478782843,11.5553332881637,10.7646229539891,8.55491555926847,11.7588594165305,5.75010257459886,16.2749127876004,10.8804321301702,13.779845764841,6.17422646486273,11.747871037489,6.70373719960675,24.4802917640113,24.8625760257855,18.3811107016792,5.42151251310611,5.33576877666684,7.64914759689189,14.8329954385046,10.6572017241915,4.49400165777607,6.91592949578798,19.8047159509192,29.1612826796452,20.6118462124354,19.4242669394586,17.0068776532742,22.1708346579067,25.3990498198326,20.2228133054205,20.9220173898839,34.0925192687451,33.6398307831173,25.0583946687368,26.6229042883012,23.4411016750542,21.217907924105,28.7008931116157,26.586895113165,21.2132581541041,23.7760706934502,20.5039390407831,13.2520838333072,10.2777321745228,23.1891590961342,6.88339101585109,2.03991400112325,10.7940638327563,9.09686984426737,10.3046184032387,11.7973312910672,8.52151612890289,8.83272415649754,8.83348936275851,15.0702459161048,6.41632387071589,7.64415719119937,0,6.71122227134764,7.09407623330276,6.57181778519218,9.02052649780574,26.9295398993059,24.3445108066313,15.26670875542,20.7036525252256,18.2186242832286,16.8809357418937,18.1086608988985,16.9649898295062,8.89901883843746,15.4721311904305,21.230653246797,12.9413479957927,12.1462835153216,14.5462575940567,13.0474232852686,36.3048188294318,27.2280718857492,8.17462576667492,16.0552266837933,8.99854096490112,14.3589356592563,29.6585466021549,26.5350349634803,22.7434377324285,31.2883776346098,24.0372529890511,36.7784838870421,27.7432559845866,16.9053343991525,17.5413828560231,10.3616330957807,19.3606507415556,28.6264974517948,16.7828536236435,22.8678904852794,20.7972648613287,20.8872052394576,21.6512187281396,19.4899587084236,18.8853460639481,27.8082710883366,24.7728965019843,23.4014995138052,18.8508329887714,12.7901734643775,18.4573648256748,18.5203922767149,18.5101868141199,10.5331978096985,16.7276139624565,16.76564646434,18.6413195281952,18.5275587385066,17.2859579002574,21.7805156738393,19.479658942993,20.9803273526834,17.2075119115302,20.1205051049714,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| ||
|EntrezGene=54380 | |||
|HGNC= | |||
|UniProt=Q8BJL0,D3YUY9,D3YUX5,D3Z0J8 | |||
|association_with_transcript=0bp_to_ENSMUST00000047615,ENSMUST00000132336,ENSMUST00000133123,ENSMUST00000136498,ENSMUST00000145868,ENSMUST00000152814,ENSMUST00000156797,NM_018817,uc007bko.2,uc007bkp.2,uc007bkq.2,uc007bkr.2,uc007bks.2_5end | |||
|description=CAGE_peak_1_at_Smarcal1_5end | |||
|id=chr1:72629819..72629856,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.43e-10!23;CL:0000337!6.43e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.43e-10,23;CL:0000337,6.43e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.46e-15!71;UBERON:0003075!2.46e-15!71;UBERON:0007284!2.46e-15!71;UBERON:0000033!4.18e-15!63;UBERON:0000153!3.82e-14!94;UBERON:0000955!5.44e-14!50;UBERON:0006238!5.44e-14!50;UBERON:0001049!1.22e-13!52;UBERON:0005068!1.22e-13!52;UBERON:0006241!1.22e-13!52;UBERON:0007135!1.22e-13!52;UBERON:0002616!2.07e-13!49;UBERON:0003056!3.09e-13!49;UBERON:0007811!3.54e-12!86;UBERON:0001017!5.00e-11!73;UBERON:0005743!5.00e-11!73;UBERON:0003080!6.61e-11!40;UBERON:0002780!2.52e-10!39;UBERON:0001890!2.52e-10!39;UBERON:0006240!2.52e-10!39;UBERON:0000073!2.84e-10!75;UBERON:0001016!2.84e-10!75;UBERON:0004121!8.21e-10!102;UBERON:0000924!8.21e-10!102;UBERON:0006601!8.21e-10!102;UBERON:0002020!9.81e-10!34;UBERON:0002791!1.22e-08!29;UBERON:0003528!1.22e-08!29;UBERON:0001893!1.22e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,8.58e-15,64;UBERON:0003075,8.58e-15,64;UBERON:0007284,8.58e-15,64;UBERON:0000073,1.23e-14,54;UBERON:0010314,3.88e-14,92;UBERON:0001049,1.22e-13,52;UBERON:0005068,1.22e-13,52;UBERON:0006241,1.22e-13,52;UBERON:0007135,1.22e-13,52;UBERON:0003056,3.09e-13,49;UBERON:0000955,2.07e-12,47;UBERON:0006238,2.07e-12,47;UBERON:0002616,7.54e-12,46;UBERON:0001017,5.00e-11,73;UBERON:0010371,5.91e-11,73;UBERON:0003080,6.61e-11,40;UBERON:0002780,2.52e-10,39;UBERON:0001890,2.52e-10,39;UBERON:0006240,2.52e-10,39;UBERON:0001016,2.84e-10,75;UBERON:0002020,9.81e-10,34;UBERON:0004121,4.37e-09,95;UBERON:0000924,4.37e-09,95;UBERON:0006601,4.37e-09,95;UBERON:0003528,1.22e-08,29;UBERON:0002791,1.22e-08,29;UBERON:0001893,1.22e-08,29 | |||
|phase1_expression=15.0539916278506,2.09385244583617,1.81999695755814,2.41971369045464,2.00358291978539,6.21153306073992,7.70921713965235,16.9151553708465,2.39340827657833,3.04283884218592,11.3003859028833,13.7208113471979,15.0656642339461,18.4457049104085,7.66152452176024,18.8301998672538,8.39474253753776,22.3978137404349,27.285772287542,18.6731446791133,17.9441342218757,17.3759164601549,12.27639008953,7.35965144849671,6.19405058881359,2.29692785646008,3.01533397311352,4.09395342103189,5.89072600314759,5.29263272495855,4.43461021310609,12.7006134691926,15.9916844771988,15.8481681015439,11.2652131702997,8.14549762256613,7.55426618170766,11.3003540298965,17.9707129240474,18.3233310390829,11.1763982725893,12.294818729252,19.4204141212461,17.2478640626541,16.1189320639028,10.8292583775392,8.60630478782843,11.5553332881637,10.7646229539891,8.55491555926847,11.7588594165305,5.75010257459886,16.2749127876004,10.8804321301702,13.779845764841,6.17422646486273,11.747871037489,6.70373719960675,24.4802917640113,24.8625760257855,18.3811107016792,5.42151251310611,5.33576877666684,7.64914759689189,14.8329954385046,10.6572017241915,4.49400165777607,6.91592949578798,19.8047159509192,29.1612826796452,20.6118462124354,19.4242669394586,17.0068776532742,22.1708346579067,25.3990498198326,20.2228133054205,20.9220173898839,34.0925192687451,33.6398307831173,25.0583946687368,26.6229042883012,23.4411016750542,21.217907924105,28.7008931116157,26.586895113165,21.2132581541041,23.7760706934502,20.5039390407831,13.2520838333072,10.2777321745228,23.1891590961342,6.88339101585109,2.03991400112325,10.7940638327563,9.09686984426737,10.3046184032387,11.7973312910672,8.52151612890289,8.83272415649754,8.83348936275851,15.0702459161048,6.41632387071589,7.64415719119937,0,6.71122227134764,7.09407623330276,6.57181778519218,9.02052649780574,26.9295398993059,24.3445108066313,15.26670875542,20.7036525252256,18.2186242832286,16.8809357418937,18.1086608988985,16.9649898295062,8.89901883843746,15.4721311904305,21.230653246797,12.9413479957927,12.1462835153216,14.5462575940567,13.0474232852686,36.3048188294318,27.2280718857492,8.17462576667492,16.0552266837933,8.99854096490112,14.3589356592563,29.6585466021549,26.5350349634803,22.7434377324285,31.2883776346098,24.0372529890511,36.7784838870421,27.7432559845866,16.9053343991525,17.5413828560231,10.3616330957807,19.3606507415556,28.6264974517948,16.7828536236435,22.8678904852794,20.7972648613287,20.8872052394576,21.6512187281396,19.4899587084236,18.8853460639481,27.8082710883366,24.7728965019843,23.4014995138052,18.8508329887714,12.7901734643775,18.4573648256748,18.5203922767149,18.5101868141199,10.5331978096985,16.7276139624565,16.76564646434,18.6413195281952,18.5275587385066,17.2859579002574,21.7805156738393,19.479658942993,20.9803273526834,17.2075119115302,20.1205051049714,18.5656894363799,13.4939076929054,16.7450813360677,16.4569683378087,17.1053985287639,16.9053588774109,16.5073895075257,26.0759536219518,15.6415010816512,7.59963200862735,7.93351699990633,21.9686898051291,16.4888037020911,19.9744565049245,13.3111126251406,13.3426826306922,10.6526350623033,8.54152310780121,8.72904460037258,9.55073793441024,11.7384318504279,8.96834800747953,3.59527763461689,6.26800344636613,9.55878111620963,25.0361629258068,19.5364956562636,19.1603150644237,19.9578301288408,19.2012962295949,12.9751266797089,16.3782631151826,14.0229640580622,14.9148791449306,12.4631135561019,8.89357881261447,16.3508203601772,14.1522476481506,12.367416181167,11.7658870405332,12.0588579876208,12.2220408855082,11.7955416354832,7.62035565842666,9.88421087477093,4.31304619582064,8.55924179637558,11.2333562321242,9.85057623993736,10.225652570749,9.16642690590398,18.4753190166605,17.2437184711141,21.8373068432315,21.0483906361233,18.0711491182147,26.6334949332487,19.7576221935391,14.8301572371927,16.2364198429377,16.8313164133069,16.9022054776936,16.5501947862895,17.6138681503213,14.0309586824066,10.5553898757491,15.7732648307426,9.34352118736169,11.5893433447988,36.4449839272288,28.1308047821288,7.86887737808042,15.4007265594668,11.042787679569,12.8844785617891,15.5104846367615,15.2940030689633,15.1503098376028,12.4553673547086,15.7876173653209,16.0740721851222,15.8115111178609,27.9549545286972,20.8651925256155,17.2723635557238,11.0763132360432,18.6416238958965,9.2921596837974,17.7229864393136,14.8138542912728,9.9960692270626,11.8120757152309,15.0643222492524,9.56184684722418,7.99774204850512,12.83390562185,9.7971394960103,11.5960469432499,11.3449097573006,27.9160476718106,17.4659261210371,22.637769661982,16.5039516974326,18.6207245324387,19.9773075714319,15.1385098953951,16.745572201303,15.0189893160775,15.4637411730589,9.70324951441832,14.6748765117917,14.5317984026315,11.7007074360622,9.90790455226033,7.71462228801788,8.74442509889552,28.9263471136395,14.6948957486153,17.3364969089107,16.2971184085346,16.0113188453987,15.3097535047548,14.1842467388044,12.4084253895514,13.7152423277185,13.2671974852247,4.77335309007557,25.623215480072,19.925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| |||
|short_description=p1@Smarcal1 | |||
}} |
Revision as of 20:51, 13 September 2013
Short description: | p1@Smarcal1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Smarcal1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000047615, ENSMUST00000132336, ENSMUST00000133123, ENSMUST00000136498, ENSMUST00000145868, ENSMUST00000152814, ENSMUST00000156797, NM_018817, uc007bko.2, uc007bkp.2, uc007bkq.2, uc007bkr.2, uc007bks.2_5end |
EntrezGene: | Smarcal1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.43e-10 | 23 |
neuroblast (sensu Vertebrata) | 6.43e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 8.58e-15 | 64 |
neural plate | 8.58e-15 | 64 |
presumptive neural plate | 8.58e-15 | 64 |
regional part of nervous system | 1.23e-14 | 54 |
structure with developmental contribution from neural crest | 3.88e-14 | 92 |
neural tube | 1.22e-13 | 52 |
neural rod | 1.22e-13 | 52 |
future spinal cord | 1.22e-13 | 52 |
neural keel | 1.22e-13 | 52 |
pre-chordal neural plate | 3.09e-13 | 49 |
brain | 2.07e-12 | 47 |
future brain | 2.07e-12 | 47 |
regional part of brain | 7.54e-12 | 46 |
central nervous system | 5.00e-11 | 73 |
ecto-epithelium | 5.91e-11 | 73 |
anterior neural tube | 6.61e-11 | 40 |
regional part of forebrain | 2.52e-10 | 39 |
forebrain | 2.52e-10 | 39 |
future forebrain | 2.52e-10 | 39 |
nervous system | 2.84e-10 | 75 |
gray matter | 9.81e-10 | 34 |
ectoderm-derived structure | 4.37e-09 | 95 |
ectoderm | 4.37e-09 | 95 |
presumptive ectoderm | 4.37e-09 | 95 |
brain grey matter | 1.22e-08 | 29 |
regional part of telencephalon | 1.22e-08 | 29 |
telencephalon | 1.22e-08 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.