FFCP PHASE1:Mm9::chr1:72583846..72583893,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=381270|HGNC=|MCL_coexpression_id=13|UniProt=Q80TE3|association_with_transcript=-342bp_to_ENSMUST00000047786_5end|description=CAGE_peak_1_at_March4_5end|id=chr1:72583846..72583893,-|ontology_enrichment_celltype=CL:0000540!5.57e-17!33;CL:0000047!5.57e-17!33;CL:0000031!5.57e-17!33;CL:0000404!5.57e-17!33;CL:0000117!1.79e-16!23;CL:0000337!1.79e-16!23;CL:0002319!2.48e-15!43;CL:0000221!1.31e-14!44;CL:0000133!1.31e-14!44;CL:0000393!1.62e-13!39;CL:0000211!1.62e-13!39;CL:0000055!3.95e-12!50|ontology_enrichment_celltype_v019_2=CL:0000117,7.67e-22,23;CL:0000337,7.67e-22,23;CL:0000540,1.26e-18,33;CL:0000047,1.26e-18,33;CL:0000031,1.26e-18,33;CL:0000404,1.26e-18,33;CL:0002319,2.64e-17,43;CL:0000221,1.18e-16,44;CL:0000133,1.18e-16,44;CL:0000393,3.13e-14,39;CL:0000211,3.13e-14,39;CL:0002609,1.94e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.68e-36!75;UBERON:0001016!6.68e-36!75;UBERON:0001017!1.12e-35!73;UBERON:0005743!1.12e-35!73;UBERON:0002346!1.23e-31!71;UBERON:0003075!1.23e-31!71;UBERON:0007284!1.23e-31!71;UBERON:0004121!1.52e-30!102;UBERON:0000924!1.52e-30!102;UBERON:0006601!1.52e-30!102;UBERON:0001049!2.25e-29!52;UBERON:0005068!2.25e-29!52;UBERON:0006241!2.25e-29!52;UBERON:0007135!2.25e-29!52;UBERON:0000955!1.46e-27!50;UBERON:0006238!1.46e-27!50;UBERON:0002616!1.15e-26!49;UBERON:0000033!8.88e-25!63;UBERON:0003080!6.84e-23!40;UBERON:0003056!1.76e-22!49;UBERON:0002020!2.84e-22!34;UBERON:0002780!2.86e-22!39;UBERON:0001890!2.86e-22!39;UBERON:0006240!2.86e-22!39;UBERON:0002791!2.21e-18!29;UBERON:0003528!2.21e-18!29;UBERON:0001893!2.21e-18!29;UBERON:0007811!1.81e-13!86;UBERON:0000956!2.42e-13!21;UBERON:0001869!2.42e-13!21;UBERON:0000203!2.42e-13!21;UBERON:0000153!5.76e-11!94;UBERON:0002619!3.32e-10!17;UBERON:0002021!1.02e-07!10;UBERON:0000411!1.02e-07!10;UBERON:0001950!1.02e-07!10;UBERON:0003076!6.37e-07!12;UBERON:0003057!6.37e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.10e-43,73;UBERON:0001016,1.47e-42,75;UBERON:0000073,6.59e-40,54;UBERON:0001049,5.90e-38,52;UBERON:0005068,5.90e-38,52;UBERON:0006241,5.90e-38,52;UBERON:0007135,5.90e-38,52;UBERON:0002346,3.94e-34,64;UBERON:0003075,3.94e-34,64;UBERON:0007284,3.94e-34,64;UBERON:0000955,8.72e-33,47;UBERON:0006238,8.72e-33,47;UBERON:0002616,1.34e-31,46;UBERON:0004121,3.19e-31,95;UBERON:0000924,3.19e-31,95;UBERON:0006601,3.19e-31,95;UBERON:0002020,4.29e-30,34;UBERON:0003080,7.91e-29,40;UBERON:0002780,5.48e-28,39;UBERON:0001890,5.48e-28,39;UBERON:0006240,5.48e-28,39;UBERON:0010371,1.34e-27,73;UBERON:0003528,8.87e-25,29;UBERON:0002791,8.87e-25,29;UBERON:0001893,8.87e-25,29;UBERON:0003056,1.92e-23,49;UBERON:0010314,7.17e-20,92;UBERON:0000956,6.61e-18,21;UBERON:0001869,6.61e-18,21;UBERON:0000203,6.61e-18,21;UBERON:0002619,1.27e-13,17;UBERON:0002021,6.14e-10,10;UBERON:0000411,6.14e-10,10;UBERON:0001950,6.14e-10,10;UBERON:0003076,3.77e-09,12;UBERON:0003057,3.77e-09,12;UBERON:0000025,1.75e-08,114;UBERON:0002420,5.97e-08,8;UBERON:0007245,5.97e-08,8;UBERON:0010009,5.97e-08,8;UBERON:0010011,5.97e-08,8;UBERON:0000454,5.97e-08,8;UBERON:0002240,4.25e-07,6;UBERON:0005174,4.25e-07,6;UBERON:0001137,4.25e-07,6;UBERON:0004111,4.95e-07,122|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0.367093504323363,0,1.09012578190223,1.5378032791413,0,0,0,0,0,0,0,0,0,5.46254444320914,10.5798195854407,7.60597684207415,0,0,0,0,0,3.29560121570245,4.2264013585371,13.9980976616445,19.3058491814318,15.3537221786509,7.7125765789027,7.28866185140325,6.73699395682247,6.42164655822184,10.1114066527102,7.70811166995721,3.95830748064082,3.37934373163736,7.25374582516066,6.67859798297591,7.29278718779464,2.79182999001381,2.25105044012672,3.0559649555362,16.7938293719991,7.68807076315156,11.9295645328192,0.151452386666368,1.13357340160178,0,0,0,0,0,0,0.983110940922263,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0.776813650941515,0.29688427812965,0.346970653532272,2.43572382649713,0.922461989024234,1.05505848386836,0.705532242814229,0.125666591329675,0,0,0,0,0,0,0,7.02673912827713,7.33063473847093,0,0,0,0,4.49371918214468,18.3000241127451,18.0942267042525,8.51739168942155,5.8814555185976,7.06479351502504,10.2211995732687,0.101839363850316,0,0,0.210441855886474,0.130120442962704,0.229902104433473,0,0.150704817835715,1.08858398642125,0.896796041993948,0.843315521037559,2.58703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,7.57043814830858,15.2298826321341,0,0.264450566663544,0,0,0.128867461322093,0,0.444756087689741,0,0.949058123089023,0,0.754005626400808,0,0.19496408711912,0,0,0,0,0.685491075658373,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0,0,0,0,0,0.390267295715598,0,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,3.05046120976805,4.10240903072711,0,0,1.57754109708128,2.73307121007647,1.93881057959519,0.477937595905104,0.668396022247182,0.283076530788832,1.61924280669958,0.876767573733936,1.58115111178609,16.0660658210904,0.141940085208269,0,0,0.494910368917606,0,0,0,0,0.885905678642318,1.22974059177571,0,0.727067458955011,0.712994756769443,0,0,0,8.17055053809091,0.18006109403131,0.517434735131018,1.50035924522115,2.6601035046341,1.96205699362278,2.79733335023606,1.522324745573,0.23467170806371,0,0.220528398054962,0,0,0,0,0,0,3.52308073819968,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0,0.218362563746178,0.134864346384821,0.165306911450672,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0.120195449519969,0,0,0,0,0.0974578807397524,0,0,0.226730383615211,0,0.0897138566094757,0,0.19318959403219,0.375364950902364,0.915758121336325,0.428736758158132,0,9.60078132449013,6.90487854760765,13.7494923225455,9.45192502890282,2.74033007908257,10.5755145634558,4.72515750162264,5.40385443869065,4.07828168085784,5.69536342927002,0,0.399024873401031,0.512200817262403,1.21553358534147,2.51535795153579,3.30918315210025,2.44471400581777,2.06035057238894,1.60459604795908,1.76888048234658,2.02783439912192,2.82939512079114,2.1537546718073,2.36893063898016,2.52716063404698,3.33405583898152,2.20180219295225,0.964546102318525,1.23625770240992,2.50238164228475,1.37147700954166,2.12970967391205,2.62279808942053,3.19762116591123,1.69396884747595,2.19997980518359,2.19513567447327,1.31534855718921,2.30866993537965,0,2.01679530811096,2.65962102414021,0.818462086339379,2.32405261778949,1.54325288784913,6.24526444844865,1.87145286756327,2.36358159453128,1.14772999241306,0.441182838239031,0.231867835620421|short_description=p1@March4}} | ||
|EntrezGene=381270 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=Q80TE3 | |||
|association_with_transcript=-342bp_to_ENSMUST00000047786_5end | |||
|description=CAGE_peak_1_at_March4_5end | |||
|id=chr1:72583846..72583893,- | |||
|ontology_enrichment_celltype=CL:0000540!5.57e-17!33;CL:0000047!5.57e-17!33;CL:0000031!5.57e-17!33;CL:0000404!5.57e-17!33;CL:0000117!1.79e-16!23;CL:0000337!1.79e-16!23;CL:0002319!2.48e-15!43;CL:0000221!1.31e-14!44;CL:0000133!1.31e-14!44;CL:0000393!1.62e-13!39;CL:0000211!1.62e-13!39;CL:0000055!3.95e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.67e-22,23;CL:0000337,7.67e-22,23;CL:0000540,1.26e-18,33;CL:0000047,1.26e-18,33;CL:0000031,1.26e-18,33;CL:0000404,1.26e-18,33;CL:0002319,2.64e-17,43;CL:0000221,1.18e-16,44;CL:0000133,1.18e-16,44;CL:0000393,3.13e-14,39;CL:0000211,3.13e-14,39;CL:0002609,1.94e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.68e-36!75;UBERON:0001016!6.68e-36!75;UBERON:0001017!1.12e-35!73;UBERON:0005743!1.12e-35!73;UBERON:0002346!1.23e-31!71;UBERON:0003075!1.23e-31!71;UBERON:0007284!1.23e-31!71;UBERON:0004121!1.52e-30!102;UBERON:0000924!1.52e-30!102;UBERON:0006601!1.52e-30!102;UBERON:0001049!2.25e-29!52;UBERON:0005068!2.25e-29!52;UBERON:0006241!2.25e-29!52;UBERON:0007135!2.25e-29!52;UBERON:0000955!1.46e-27!50;UBERON:0006238!1.46e-27!50;UBERON:0002616!1.15e-26!49;UBERON:0000033!8.88e-25!63;UBERON:0003080!6.84e-23!40;UBERON:0003056!1.76e-22!49;UBERON:0002020!2.84e-22!34;UBERON:0002780!2.86e-22!39;UBERON:0001890!2.86e-22!39;UBERON:0006240!2.86e-22!39;UBERON:0002791!2.21e-18!29;UBERON:0003528!2.21e-18!29;UBERON:0001893!2.21e-18!29;UBERON:0007811!1.81e-13!86;UBERON:0000956!2.42e-13!21;UBERON:0001869!2.42e-13!21;UBERON:0000203!2.42e-13!21;UBERON:0000153!5.76e-11!94;UBERON:0002619!3.32e-10!17;UBERON:0002021!1.02e-07!10;UBERON:0000411!1.02e-07!10;UBERON:0001950!1.02e-07!10;UBERON:0003076!6.37e-07!12;UBERON:0003057!6.37e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.10e-43,73;UBERON:0001016,1.47e-42,75;UBERON:0000073,6.59e-40,54;UBERON:0001049,5.90e-38,52;UBERON:0005068,5.90e-38,52;UBERON:0006241,5.90e-38,52;UBERON:0007135,5.90e-38,52;UBERON:0002346,3.94e-34,64;UBERON:0003075,3.94e-34,64;UBERON:0007284,3.94e-34,64;UBERON:0000955,8.72e-33,47;UBERON:0006238,8.72e-33,47;UBERON:0002616,1.34e-31,46;UBERON:0004121,3.19e-31,95;UBERON:0000924,3.19e-31,95;UBERON:0006601,3.19e-31,95;UBERON:0002020,4.29e-30,34;UBERON:0003080,7.91e-29,40;UBERON:0002780,5.48e-28,39;UBERON:0001890,5.48e-28,39;UBERON:0006240,5.48e-28,39;UBERON:0010371,1.34e-27,73;UBERON:0003528,8.87e-25,29;UBERON:0002791,8.87e-25,29;UBERON:0001893,8.87e-25,29;UBERON:0003056,1.92e-23,49;UBERON:0010314,7.17e-20,92;UBERON:0000956,6.61e-18,21;UBERON:0001869,6.61e-18,21;UBERON:0000203,6.61e-18,21;UBERON:0002619,1.27e-13,17;UBERON:0002021,6.14e-10,10;UBERON:0000411,6.14e-10,10;UBERON:0001950,6.14e-10,10;UBERON:0003076,3.77e-09,12;UBERON:0003057,3.77e-09,12;UBERON:0000025,1.75e-08,114;UBERON:0002420,5.97e-08,8;UBERON:0007245,5.97e-08,8;UBERON:0010009,5.97e-08,8;UBERON:0010011,5.97e-08,8;UBERON:0000454,5.97e-08,8;UBERON:0002240,4.25e-07,6;UBERON:0005174,4.25e-07,6;UBERON:0001137,4.25e-07,6;UBERON:0004111,4.95e-07,122 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0.367093504323363,0,1.09012578190223,1.5378032791413,0,0,0,0,0,0,0,0,0,5.46254444320914,10.5798195854407,7.60597684207415,0,0,0,0,0,3.29560121570245,4.2264013585371,13.9980976616445,19.3058491814318,15.3537221786509,7.7125765789027,7.28866185140325,6.73699395682247,6.42164655822184,10.1114066527102,7.70811166995721,3.95830748064082,3.37934373163736,7.25374582516066,6.67859798297591,7.29278718779464,2.79182999001381,2.25105044012672,3.0559649555362,16.7938293719991,7.68807076315156,11.9295645328192,0.151452386666368,1.13357340160178,0,0,0,0,0,0,0.983110940922263,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0.776813650941515,0.29688427812965,0.346970653532272,2.43572382649713,0.922461989024234,1.05505848386836,0.705532242814229,0.125666591329675,0,0,0,0,0,0,0,7.02673912827713,7.33063473847093,0,0,0,0,4.49371918214468,18.3000241127451,18.0942267042525,8.51739168942155,5.8814555185976,7.06479351502504,10.2211995732687,0.101839363850316,0,0,0.210441855886474,0.130120442962704,0.229902104433473,0,0.150704817835715,1.08858398642125,0.896796041993948,0.843315521037559,2.58703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,7.57043814830858,15.2298826321341,0,0.264450566663544,0,0,0.128867461322093,0,0.444756087689741,0,0.949058123089023,0,0.754005626400808,0,0.19496408711912,0,0,0,0,0.685491075658373,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0,0,0,0,0,0.390267295715598,0,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,3.05046120976805,4.10240903072711,0,0,1.57754109708128,2.73307121007647,1.93881057959519,0.477937595905104,0.668396022247182,0.283076530788832,1.61924280669958,0.876767573733936,1.58115111178609,16.0660658210904,0.141940085208269,0,0,0.494910368917606,0,0,0,0,0.885905678642318,1.22974059177571,0,0.727067458955011,0.712994756769443,0,0,0,8.17055053809091,0.18006109403131,0.517434735131018,1.50035924522115,2.6601035046341,1.96205699362278,2.79733335023606,1.522324745573,0.23467170806371,0,0.220528398054962,0,0,0,0,0,0,3.52308073819968,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0,0.218362563746178,0.134864346384821,0.165306911450672,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0.120195449519969,0,0,0,0,0.0974578807397524,0,0,0.226730383615211,0,0.0897138566094757,0,0.19318959403219,0.375364950902364,0.915758121336325,0.428736758158132,0,9.60078132449013,6.90487854760765,13.7494923225455,9.45192502890282,2.74033007908257,10.5755145634558,4.72515750162264,5.40385443869065,4.07828168085784,5.69536342927002,0,0.399024873401031,0.512200817262403,1.21553358534147,2.51535795153579,3.30918315210025,2.44471400581777,2.06035057238894,1.60459604795908,1.76888048234658,2.02783439912192,2.82939512079114,2.1537546718073,2.36893063898016,2.52716063404698,3.33405583898152,2.20180219295225,0.964546102318525,1.23625770240992,2.50238164228475,1.37147700954166,2.12970967391205,2.62279808942053,3.19762116591123,1.69396884747595,2.19997980518359,2.19513567447327,1.31534855718921,2.30866993537965,0,2.01679530811096,2.65962102414021,0.818462086339379,2.32405261778949,1.54325288784913,6.24526444844865,1.87145286756327,2.36358159453128,1.14772999241306,0.441182838239031,0.231867835620421 | |||
|short_description=p1@March4 | |||
}} |
Revision as of 20:51, 13 September 2013
Short description: | p1@March4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_March4_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -342bp_to_ENSMUST00000047786_5end |
EntrezGene: | March4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.67e-22 | 23 |
neuroblast (sensu Vertebrata) | 7.67e-22 | 23 |
neuron | 1.26e-18 | 33 |
neuronal stem cell | 1.26e-18 | 33 |
neuroblast | 1.26e-18 | 33 |
electrically signaling cell | 1.26e-18 | 33 |
neural cell | 2.64e-17 | 43 |
ectodermal cell | 1.18e-16 | 44 |
neurectodermal cell | 1.18e-16 | 44 |
electrically responsive cell | 3.13e-14 | 39 |
electrically active cell | 3.13e-14 | 39 |
neuron of cerebral cortex | 1.94e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.