FFCP PHASE1:Mm9::chr1:69595291..69595300,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=29|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:69595291..69595300,-|id=chr1:69595291..69595300,-|ontology_enrichment_celltype=CL:0000624!1.90e-26!8;CL:0000791!1.74e-23!9;CL:0000789!1.74e-23!9;CL:0002420!1.74e-23!9;CL:0002419!1.74e-23!9;CL:0000790!1.74e-23!9;CL:0000084!3.58e-19!11;CL:0000827!3.58e-19!11;CL:0000838!1.49e-17!12;CL:0000542!3.51e-16!13;CL:0000051!3.51e-16!13;CL:0000893!9.54e-16!6;CL:0002489!9.54e-16!6;CL:0000898!9.54e-16!6;CL:0000809!9.54e-16!6;CL:0000810!9.54e-16!6;CL:0000895!9.54e-16!6;CL:0000808!9.54e-16!6;CL:0000894!9.54e-16!6;CL:0000806!9.54e-16!6;CL:0000807!9.54e-16!6;CL:0000805!9.54e-16!6;CL:0002425!9.54e-16!6;CL:0002436!9.54e-16!6;CL:0002427!9.54e-16!6;CL:0002428!9.54e-16!6;CL:0002429!9.54e-16!6;CL:0002433!9.54e-16!6;CL:0002431!9.54e-16!6;CL:0002432!9.54e-16!6;CL:0002031!1.89e-14!25;CL:0000738!2.66e-12!17;CL:0002087!2.66e-12!17;CL:0000988!4.11e-11!32;CL:0002032!4.11e-11!32;CL:0000037!4.11e-11!32;CL:0000566!4.11e-11!32;CL:0000837!4.11e-11!32;CL:0000815!1.20e-07!1;CL:0000792!1.20e-07!1;CL:0002320!1.81e-07!46;CL:0000134!1.81e-07!46|ontology_enrichment_celltype_v019_2=CL:0000815,2.87e-30,1;CL:0000792,2.87e-30,1;CL:0000624,1.45e-15,8;CL:0000791,5.71e-14,9;CL:0000789,5.71e-14,9;CL:0002420,5.71e-14,9;CL:0002419,5.71e-14,9;CL:0000790,5.71e-14,9;CL:0000084,1.21e-11,11;CL:0000827,1.21e-11,11;CL:0000838,9.03e-11,12;CL:0000542,4.98e-10,13;CL:0000051,4.98e-10,13;CL:0000738,6.30e-08,17;CL:0002087,6.30e-08,17|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!3.95e-19!48;UBERON:0002465!2.04e-18!3;UBERON:0002405!1.22e-12!70;UBERON:0001962!1.64e-12!2;UBERON:0001961!1.64e-12!2;UBERON:0001744!1.64e-12!2;UBERON:0004177!4.75e-12!29;UBERON:0002390!8.09e-12!45;UBERON:0003061!8.09e-12!45;UBERON:0002370!9.84e-12!23;UBERON:0000974!9.84e-12!23;UBERON:0004807!9.84e-12!23;UBERON:0005058!9.84e-12!23;UBERON:0003351!9.84e-12!23;UBERON:0009113!9.84e-12!23;UBERON:0003295!9.84e-12!23;UBERON:0009722!9.84e-12!23;UBERON:0005562!9.84e-12!23;UBERON:0007690!9.84e-12!23;UBERON:0006562!3.20e-11!24;UBERON:0003408!3.20e-11!24;UBERON:0001557!3.20e-11!24;UBERON:0001042!3.20e-11!24;UBERON:0008814!3.20e-11!24;UBERON:0009145!3.20e-11!24;UBERON:0000072!6.55e-10!27;UBERON:0000029!1.38e-07!1;UBERON:0001097!1.38e-07!1;UBERON:0003968!1.38e-07!1;UBERON:0008785!1.38e-07!1;UBERON:0001467!1.38e-07!1;UBERON:0001421!1.38e-07!1;UBERON:0000063!1.66e-07!35;UBERON:0002384!1.81e-07!46;UBERON:0003199!3.67e-07!1;UBERON:0003081!9.88e-07!88|ontology_enrichment_uberon_v019_2=UBERON:0000029,5.62e-30,1;UBERON:0001097,5.62e-30,1;UBERON:0003968,5.62e-30,1;UBERON:0001467,5.62e-30,1;UBERON:0002465,5.71e-11,3|phase1_expression=0,0,0,0,0,0,0,15.6239221364307,0.281577444303333,0,0.34243593645101,0,0.171200729931206,0.0874204024189974,0,0.202475267389826,0,0.473193248037357,0,0,0,0,0,0.159992422793407,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45072428402269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8125651855302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512612642393558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:69595291..69595300,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=29 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:69595291..69595300,- | |||
|id=chr1:69595291..69595300,- | |||
|ontology_enrichment_celltype=CL:0000624!1.90e-26!8;CL:0000791!1.74e-23!9;CL:0000789!1.74e-23!9;CL:0002420!1.74e-23!9;CL:0002419!1.74e-23!9;CL:0000790!1.74e-23!9;CL:0000084!3.58e-19!11;CL:0000827!3.58e-19!11;CL:0000838!1.49e-17!12;CL:0000542!3.51e-16!13;CL:0000051!3.51e-16!13;CL:0000893!9.54e-16!6;CL:0002489!9.54e-16!6;CL:0000898!9.54e-16!6;CL:0000809!9.54e-16!6;CL:0000810!9.54e-16!6;CL:0000895!9.54e-16!6;CL:0000808!9.54e-16!6;CL:0000894!9.54e-16!6;CL:0000806!9.54e-16!6;CL:0000807!9.54e-16!6;CL:0000805!9.54e-16!6;CL:0002425!9.54e-16!6;CL:0002436!9.54e-16!6;CL:0002427!9.54e-16!6;CL:0002428!9.54e-16!6;CL:0002429!9.54e-16!6;CL:0002433!9.54e-16!6;CL:0002431!9.54e-16!6;CL:0002432!9.54e-16!6;CL:0002031!1.89e-14!25;CL:0000738!2.66e-12!17;CL:0002087!2.66e-12!17;CL:0000988!4.11e-11!32;CL:0002032!4.11e-11!32;CL:0000037!4.11e-11!32;CL:0000566!4.11e-11!32;CL:0000837!4.11e-11!32;CL:0000815!1.20e-07!1;CL:0000792!1.20e-07!1;CL:0002320!1.81e-07!46;CL:0000134!1.81e-07!46 | |||
|ontology_enrichment_celltype_v019_2=CL:0000815,2.87e-30,1;CL:0000792,2.87e-30,1;CL:0000624,1.45e-15,8;CL:0000791,5.71e-14,9;CL:0000789,5.71e-14,9;CL:0002420,5.71e-14,9;CL:0002419,5.71e-14,9;CL:0000790,5.71e-14,9;CL:0000084,1.21e-11,11;CL:0000827,1.21e-11,11;CL:0000838,9.03e-11,12;CL:0000542,4.98e-10,13;CL:0000051,4.98e-10,13;CL:0000738,6.30e-08,17;CL:0002087,6.30e-08,17 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.95e-19!48;UBERON:0002465!2.04e-18!3;UBERON:0002405!1.22e-12!70;UBERON:0001962!1.64e-12!2;UBERON:0001961!1.64e-12!2;UBERON:0001744!1.64e-12!2;UBERON:0004177!4.75e-12!29;UBERON:0002390!8.09e-12!45;UBERON:0003061!8.09e-12!45;UBERON:0002370!9.84e-12!23;UBERON:0000974!9.84e-12!23;UBERON:0004807!9.84e-12!23;UBERON:0005058!9.84e-12!23;UBERON:0003351!9.84e-12!23;UBERON:0009113!9.84e-12!23;UBERON:0003295!9.84e-12!23;UBERON:0009722!9.84e-12!23;UBERON:0005562!9.84e-12!23;UBERON:0007690!9.84e-12!23;UBERON:0006562!3.20e-11!24;UBERON:0003408!3.20e-11!24;UBERON:0001557!3.20e-11!24;UBERON:0001042!3.20e-11!24;UBERON:0008814!3.20e-11!24;UBERON:0009145!3.20e-11!24;UBERON:0000072!6.55e-10!27;UBERON:0000029!1.38e-07!1;UBERON:0001097!1.38e-07!1;UBERON:0003968!1.38e-07!1;UBERON:0008785!1.38e-07!1;UBERON:0001467!1.38e-07!1;UBERON:0001421!1.38e-07!1;UBERON:0000063!1.66e-07!35;UBERON:0002384!1.81e-07!46;UBERON:0003199!3.67e-07!1;UBERON:0003081!9.88e-07!88 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000029,5.62e-30,1;UBERON:0001097,5.62e-30,1;UBERON:0003968,5.62e-30,1;UBERON:0001467,5.62e-30,1;UBERON:0002465,5.71e-11,3 | |||
|phase1_expression=0,0,0,0,0,0,0,15.6239221364307,0.281577444303333,0,0.34243593645101,0,0.171200729931206,0.0874204024189974,0,0.202475267389826,0,0.473193248037357,0,0,0,0,0,0.159992422793407,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45072428402269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8125651855302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512612642393558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:69595291..69595300,- | |||
}} |
Revision as of 20:48, 13 September 2013
Short description: | p@chr1:69595291..69595300, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:69595291..69595300, - |
Coexpression cluster: | MCL_coexpression_mm9:29 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regulatory T cell | 2.87e-30 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.87e-30 | 1 |
CD4-positive, alpha-beta T cell | 1.45e-15 | 8 |
mature alpha-beta T cell | 5.71e-14 | 9 |
alpha-beta T cell | 5.71e-14 | 9 |
immature T cell | 5.71e-14 | 9 |
mature T cell | 5.71e-14 | 9 |
immature alpha-beta T cell | 5.71e-14 | 9 |
T cell | 1.21e-11 | 11 |
pro-T cell | 1.21e-11 | 11 |
lymphoid lineage restricted progenitor cell | 9.03e-11 | 12 |
lymphocyte | 4.98e-10 | 13 |
common lymphoid progenitor | 4.98e-10 | 13 |
leukocyte | 6.30e-08 | 17 |
nongranular leukocyte | 6.30e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
lymph node | 5.62e-30 | 1 |
axillary lymph node | 5.62e-30 | 1 |
peripheral lymph node | 5.62e-30 | 1 |
shoulder | 5.62e-30 | 1 |
lymphoid system | 5.71e-11 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.