FFCP PHASE1:Mm9::chr1:162282144..162282206,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=29809|HGNC=|MCL_coexpression_id=13|UniProt=A6H6A9|association_with_transcript=-442bp_to_ENSMUST00000028052,NM_001038621,uc007deh.1_5end|description=CAGE_peak_4_at_Rabgap1l_5end|id=chr1:162282144..162282206,-|ontology_enrichment_celltype=CL:0000540!5.12e-15!33;CL:0000047!5.12e-15!33;CL:0000031!5.12e-15!33;CL:0000404!5.12e-15!33;CL:0000117!4.23e-14!23;CL:0000337!4.23e-14!23;CL:0000393!2.75e-11!39;CL:0000211!2.75e-11!39;CL:0000221!1.08e-10!44;CL:0000133!1.08e-10!44;CL:0002319!2.74e-10!43;CL:0000055!1.99e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,6.64e-18,33;CL:0000047,6.64e-18,33;CL:0000031,6.64e-18,33;CL:0000404,6.64e-18,33;CL:0000117,8.64e-17,23;CL:0000337,8.64e-17,23;CL:0000393,1.14e-13,39;CL:0000211,1.14e-13,39;CL:0000221,3.28e-12,44;CL:0000133,3.28e-12,44;CL:0002319,9.98e-12,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!7.15e-25!73;UBERON:0005743!7.15e-25!73;UBERON:0000073!2.13e-24!75;UBERON:0001016!2.13e-24!75;UBERON:0002346!3.81e-22!71;UBERON:0003075!3.81e-22!71;UBERON:0007284!3.81e-22!71;UBERON:0004121!5.56e-22!102;UBERON:0000924!5.56e-22!102;UBERON:0006601!5.56e-22!102;UBERON:0001049!2.38e-21!52;UBERON:0005068!2.38e-21!52;UBERON:0006241!2.38e-21!52;UBERON:0007135!2.38e-21!52;UBERON:0000955!7.55e-20!50;UBERON:0006238!7.55e-20!50;UBERON:0000033!9.89e-20!63;UBERON:0002616!2.54e-19!49;UBERON:0002020!7.52e-19!34;UBERON:0003056!2.66e-16!49;UBERON:0003080!3.02e-16!40;UBERON:0002780!1.16e-15!39;UBERON:0001890!1.16e-15!39;UBERON:0006240!1.16e-15!39;UBERON:0002791!1.53e-15!29;UBERON:0003528!1.53e-15!29;UBERON:0001893!1.53e-15!29;UBERON:0000956!1.56e-11!21;UBERON:0001869!1.56e-11!21;UBERON:0000203!1.56e-11!21;UBERON:0000153!3.07e-09!94;UBERON:0007811!4.81e-09!86;UBERON:0002619!6.93e-09!17;UBERON:0002021!8.55e-08!10;UBERON:0000411!8.55e-08!10;UBERON:0001950!8.55e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.56e-28,73;UBERON:0001016,8.72e-28,75;UBERON:0000073,5.36e-26,54;UBERON:0002346,4.43e-25,64;UBERON:0003075,4.43e-25,64;UBERON:0007284,4.43e-25,64;UBERON:0001049,2.29e-24,52;UBERON:0005068,2.29e-24,52;UBERON:0006241,2.29e-24,52;UBERON:0007135,2.29e-24,52;UBERON:0004121,8.08e-24,95;UBERON:0000924,8.08e-24,95;UBERON:0006601,8.08e-24,95;UBERON:0010371,1.46e-22,73;UBERON:0002020,6.25e-22,34;UBERON:0000955,2.94e-20,47;UBERON:0006238,2.94e-20,47;UBERON:0002616,1.22e-19,46;UBERON:0003528,6.29e-18,29;UBERON:0002791,6.29e-18,29;UBERON:0001893,6.29e-18,29;UBERON:0003080,7.44e-18,40;UBERON:0003056,1.84e-17,49;UBERON:0002780,3.70e-17,39;UBERON:0001890,3.70e-17,39;UBERON:0006240,3.70e-17,39;UBERON:0010314,1.10e-14,92;UBERON:0000956,4.54e-13,21;UBERON:0001869,4.54e-13,21;UBERON:0000203,4.54e-13,21;UBERON:0002619,6.88e-10,17;UBERON:0002021,3.91e-09,10;UBERON:0000411,3.91e-09,10;UBERON:0001950,3.91e-09,10;UBERON:0003076,4.07e-07,12;UBERON:0003057,4.07e-07,12|phase1_expression=4.48416771893423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0.137114433605739,0,2.63634199468316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38486499773135,0.506884656097573,0,0,1.30815093828268,0.219686182734472,0.388859798148567,0,0,0.167782606057736,0,0,0.257259436035947,0,0,16.9945827122062,22.2176211294254,22.8179305262225,0.677689064138264,0,0.449949858640699,0,0,0.299600110518405,0.768436610643109,37.6393292679774,33.4814727062593,33.021018932167,22.8520787523043,22.307722636113,14.0864419097197,8.24271050756833,19.3035945188104,33.0347642998166,23.7498448838449,30.4140935847362,16.353899678544,19.3038928001084,24.4829284161677,14.7966989470732,18.0084035210138,26.7396933609418,71.5947462701013,58.9418758508286,33.5519002485541,0.227178579999552,1.20914496170857,0,0,0,0,0,0,0.983110940922263,0.852151612890289,0,0.35333957451034,8.59144860637751,0,0,0,0,0,0.505524445014783,0.45673551887624,2.07150306917737,1.03909497345377,0.520455980298408,2.43572382649713,1.15307748628029,2.56228488939458,3.17489509266403,0.251333182659351,0,2.02439099687876,0,0.485300549842228,0.220841518460394,0.484875253135222,0,26.9358333250623,19.4785437336513,0,0,0.599902730993408,0.127070227073065,24.5656648623909,19.2150253183823,10.3036568732549,37.1984045211472,31.1972857943003,24.103413168909,22.5515355664183,7.43427356107309,0.622034853050465,1.0108910337347,0.210441855886474,0.520481771850815,1.14951052216736,2.34080768746954,2.86339153887859,3.6739709541717,3.71529788826064,2.81105173679186,2.58703370739016,0.646703978798527,1.13463648100692,0.527853372491847,0.657587197282725,2.50242524303038,0.348252166522167,1.85203922767149,2.58744546864041,0,0,0.284163499395593,0,0.234526059981096,0.720248245844059,0.946978942340841,0.983821158737019,0.462801338662135,0.232533944750408,0.268273401399619,0.583826711835847,0.329119699826961,0.32833492815819,0.648550476366846,0.146199987425332,0.219550115291051,0.536825675041487,64.5590142091871,26.1377715443382,0,0,0.853153002140936,1.16118335930219,2.19074684247559,1.4117846723634,2.00140239460383,0.760902504450237,0.4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| ||
|EntrezGene=29809 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=A6H6A9 | |||
|association_with_transcript=-442bp_to_ENSMUST00000028052,NM_001038621,uc007deh.1_5end | |||
|description=CAGE_peak_4_at_Rabgap1l_5end | |||
|id=chr1:162282144..162282206,- | |||
|ontology_enrichment_celltype=CL:0000540!5.12e-15!33;CL:0000047!5.12e-15!33;CL:0000031!5.12e-15!33;CL:0000404!5.12e-15!33;CL:0000117!4.23e-14!23;CL:0000337!4.23e-14!23;CL:0000393!2.75e-11!39;CL:0000211!2.75e-11!39;CL:0000221!1.08e-10!44;CL:0000133!1.08e-10!44;CL:0002319!2.74e-10!43;CL:0000055!1.99e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.64e-18,33;CL:0000047,6.64e-18,33;CL:0000031,6.64e-18,33;CL:0000404,6.64e-18,33;CL:0000117,8.64e-17,23;CL:0000337,8.64e-17,23;CL:0000393,1.14e-13,39;CL:0000211,1.14e-13,39;CL:0000221,3.28e-12,44;CL:0000133,3.28e-12,44;CL:0002319,9.98e-12,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.15e-25!73;UBERON:0005743!7.15e-25!73;UBERON:0000073!2.13e-24!75;UBERON:0001016!2.13e-24!75;UBERON:0002346!3.81e-22!71;UBERON:0003075!3.81e-22!71;UBERON:0007284!3.81e-22!71;UBERON:0004121!5.56e-22!102;UBERON:0000924!5.56e-22!102;UBERON:0006601!5.56e-22!102;UBERON:0001049!2.38e-21!52;UBERON:0005068!2.38e-21!52;UBERON:0006241!2.38e-21!52;UBERON:0007135!2.38e-21!52;UBERON:0000955!7.55e-20!50;UBERON:0006238!7.55e-20!50;UBERON:0000033!9.89e-20!63;UBERON:0002616!2.54e-19!49;UBERON:0002020!7.52e-19!34;UBERON:0003056!2.66e-16!49;UBERON:0003080!3.02e-16!40;UBERON:0002780!1.16e-15!39;UBERON:0001890!1.16e-15!39;UBERON:0006240!1.16e-15!39;UBERON:0002791!1.53e-15!29;UBERON:0003528!1.53e-15!29;UBERON:0001893!1.53e-15!29;UBERON:0000956!1.56e-11!21;UBERON:0001869!1.56e-11!21;UBERON:0000203!1.56e-11!21;UBERON:0000153!3.07e-09!94;UBERON:0007811!4.81e-09!86;UBERON:0002619!6.93e-09!17;UBERON:0002021!8.55e-08!10;UBERON:0000411!8.55e-08!10;UBERON:0001950!8.55e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.56e-28,73;UBERON:0001016,8.72e-28,75;UBERON:0000073,5.36e-26,54;UBERON:0002346,4.43e-25,64;UBERON:0003075,4.43e-25,64;UBERON:0007284,4.43e-25,64;UBERON:0001049,2.29e-24,52;UBERON:0005068,2.29e-24,52;UBERON:0006241,2.29e-24,52;UBERON:0007135,2.29e-24,52;UBERON:0004121,8.08e-24,95;UBERON:0000924,8.08e-24,95;UBERON:0006601,8.08e-24,95;UBERON:0010371,1.46e-22,73;UBERON:0002020,6.25e-22,34;UBERON:0000955,2.94e-20,47;UBERON:0006238,2.94e-20,47;UBERON:0002616,1.22e-19,46;UBERON:0003528,6.29e-18,29;UBERON:0002791,6.29e-18,29;UBERON:0001893,6.29e-18,29;UBERON:0003080,7.44e-18,40;UBERON:0003056,1.84e-17,49;UBERON:0002780,3.70e-17,39;UBERON:0001890,3.70e-17,39;UBERON:0006240,3.70e-17,39;UBERON:0010314,1.10e-14,92;UBERON:0000956,4.54e-13,21;UBERON:0001869,4.54e-13,21;UBERON:0000203,4.54e-13,21;UBERON:0002619,6.88e-10,17;UBERON:0002021,3.91e-09,10;UBERON:0000411,3.91e-09,10;UBERON:0001950,3.91e-09,10;UBERON:0003076,4.07e-07,12;UBERON:0003057,4.07e-07,12 | |||
|phase1_expression=4.48416771893423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0.137114433605739,0,2.63634199468316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38486499773135,0.506884656097573,0,0,1.30815093828268,0.219686182734472,0.388859798148567,0,0,0.167782606057736,0,0,0.257259436035947,0,0,16.9945827122062,22.2176211294254,22.8179305262225,0.677689064138264,0,0.449949858640699,0,0,0.299600110518405,0.768436610643109,37.6393292679774,33.4814727062593,33.021018932167,22.8520787523043,22.307722636113,14.0864419097197,8.24271050756833,19.3035945188104,33.0347642998166,23.7498448838449,30.4140935847362,16.353899678544,19.3038928001084,24.4829284161677,14.7966989470732,18.0084035210138,26.7396933609418,71.5947462701013,58.9418758508286,33.5519002485541,0.227178579999552,1.20914496170857,0,0,0,0,0,0,0.983110940922263,0.852151612890289,0,0.35333957451034,8.59144860637751,0,0,0,0,0,0.505524445014783,0.45673551887624,2.07150306917737,1.03909497345377,0.520455980298408,2.43572382649713,1.15307748628029,2.56228488939458,3.17489509266403,0.251333182659351,0,2.02439099687876,0,0.485300549842228,0.220841518460394,0.484875253135222,0,26.9358333250623,19.4785437336513,0,0,0.599902730993408,0.127070227073065,24.5656648623909,19.2150253183823,10.3036568732549,37.1984045211472,31.1972857943003,24.103413168909,22.5515355664183,7.43427356107309,0.622034853050465,1.0108910337347,0.210441855886474,0.520481771850815,1.14951052216736,2.34080768746954,2.86339153887859,3.6739709541717,3.71529788826064,2.81105173679186,2.58703370739016,0.646703978798527,1.13463648100692,0.527853372491847,0.657587197282725,2.50242524303038,0.348252166522167,1.85203922767149,2.58744546864041,0,0,0.284163499395593,0,0.234526059981096,0.720248245844059,0.946978942340841,0.983821158737019,0.462801338662135,0.232533944750408,0.268273401399619,0.583826711835847,0.329119699826961,0.32833492815819,0.648550476366846,0.146199987425332,0.219550115291051,0.536825675041487,64.5590142091871,26.1377715443382,0,0,0.853153002140936,1.16118335930219,2.19074684247559,1.4117846723634,2.00140239460383,0.760902504450237,0.474529061544512,0.823494773620054,0.754005626400808,0.994782360205754,0.974820435595601,0.898819408654221,0,0,0.189667900953082,0.456994050438915,1.1270773567308,0.203651327845314,0.969762435838129,0.420814919341911,0,0,0,0.123397163921801,0,0.166845105716094,0,0.224862112384854,0.202860121388503,0,0,0,0,0,1.43768206527355,0.372140947668503,0,0.252578877947112,0.179397413521912,0,0.184753190166605,0,0.325929952884052,0.848725428875941,0.704070744865506,0.670025029767263,0,0.195133647857799,0.472905432318573,0.221464689648775,0.318909537314974,0,0,0,0,0,0,0,22.6376331882787,19.9259867206745,0.163934945376675,0.504941854408746,2.83957397474631,3.51394869866975,8.40151251157916,1.43381278771531,1.33679204449436,3.39691836946599,1.61924280669958,2.63030272120181,4.34816555741176,18.315315036043,4.25820255624806,3.02711526234334,5.86393053672874,5.93892442701128,0,6.79785781233948,3.93020624054176,4.71512699389745,0.885905678642318,1.84461088766356,1.55056975900933,3.27180356529755,1.78248689192361,0.316036757935816,1.05418608574999,0,1.70219802876894,1.08036656418786,0.905510786479282,1.07168517515796,0.354680467284547,1.96205699362278,2.63278432963394,1.522324745573,0,0,2.64634077665954,1.48397627647332,1.61464426695906,0.603129249281559,0.238744688006273,0.492422699235184,0,26.8866687915239,0.170870880797853,0.619160603889667,0.740778109478847,0,0,0,0,0.139951452323658,0,0,0.158167996790568,3.25311147402958,1.94409613479242,1.67270636811575,1.09181281873089,1.88810084938749,1.1571483801547,0,0.518459893167171,0,0,0.149516546043979,0,0.972255941720238,0.904118764344118,1.68956125490778,2.46450201156083,1.5624526181274,1.04859344425711,0,0.288030006257865,0,0.405450430580328,0.718976700153791,0.389762468933385,0.358053391334963,0.198681354781265,0.240390899039938,0.147689527174577,0.201932899896295,0.15241361331,0,0,0.288635524920988,0.467507608726276,0.906921534460845,0,0,0.671538465456314,0.772758376128762,0.187682475451182,0.183151624267265,0.428736758158132,0.501572104035363,34.4498623996411,40.5086208126316,44.6858500482729,32.1365450982696,29.4585483501376,29.4603619981983,28.3509450097358,30.1715206160228,28.5479717660049,32.6188996403647,1.55681021376265,5.1873233542134,2.90247129782028,6.80698807791223,7.54607385460736,6.80220981265052,8.22312892865976,9.88968274746692,12.194929964489,12.1294661646623,8.11133759648767,8.48818536237343,7.67860361253036,8.1311943554184,6.31790158511746,5.71552429539688,6.37363792696705,5.59436739344745,6.1812885120496,8.39033844766065,4.80016953339582,7.45398385869217,7.15308569841963,8.57543858130738,7.81107857447244,7.78454392603424,4.75612729469209,7.62902163169744,7.4692262615224,11.2228454331548,7.94854621431967,5.41774653065599,7.7753898202241,6.66228417099654,4.24394544158511,8.24374907195222,5.6143586026898,5.37177635120746,5.16478496585877,2.42650561031467,3.47801753430632 | |||
|short_description=p4@Rabgap1l | |||
}} |
Revision as of 19:24, 13 September 2013
Short description: | p4@Rabgap1l |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rabgap1l_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -442bp_to_ENSMUST00000028052, NM_001038621, uc007deh.1_5end |
EntrezGene: | Rabgap1l |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.64e-18 | 33 |
neuronal stem cell | 6.64e-18 | 33 |
neuroblast | 6.64e-18 | 33 |
electrically signaling cell | 6.64e-18 | 33 |
CNS neuron (sensu Vertebrata) | 8.64e-17 | 23 |
neuroblast (sensu Vertebrata) | 8.64e-17 | 23 |
electrically responsive cell | 1.14e-13 | 39 |
electrically active cell | 1.14e-13 | 39 |
ectodermal cell | 3.28e-12 | 44 |
neurectodermal cell | 3.28e-12 | 44 |
neural cell | 9.98e-12 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.