FFCP PHASE1:Hg19::chr6:138412884..138412951,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C748|description=CAGE_peak_at_chr6:138412884..138412951,-|id=chr6:138412884..138412951,-|ontology_enrichment_celltype=CL:0000066!6.69e-24!254;CL:0000223!8.76e-14!59;CL:0002076!1.89e-13!43;CL:0002251!1.08e-09!21;CL:0000076!2.64e-08!62;CL:0002321!2.01e-07!248;CL:0002159!2.08e-07!13;CL:0000220!2.63e-07!246|ontology_enrichment_celltype_v019=CL:0002076;1.73e-14;42!CL:0002251;3.39e-12;20!CL:0002159;2.13e-11;14!CL:0000244;2.63e-09;4!CL:0000731;2.63e-09;4!CL:0002623;1.14e-08;3!CL:0000622;1.22e-08;5!CL:0002621;1.20e-07;3!CL:0000154;3.65e-07;6!CL:0002166;8.53e-07;3|ontology_enrichment_celltype_v019_2=CL:0002076,1.06e-18,42;CL:0000223,8.46e-18,58;CL:0000066,4.29e-17,253;CL:0002251,3.38e-12,20;CL:0002159,1.33e-11,14;CL:0000244,1.42e-09,4;CL:0000731,1.42e-09,4;CL:0002623,1.17e-08,3;CL:0000622,1.29e-08,5;CL:0002621,1.21e-07,3;CL:0002166,1.90e-07,3;CL:0000154,3.80e-07,6|ontology_enrichment_development_v019=CL:0000223;3.38e-09;58|ontology_enrichment_disease=DOID:0050687!3.83e-13!143;DOID:305!1.10e-12!106;DOID:14566!7.15e-10!239;DOID:162!2.70e-09!235|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!2.72e-16!169;UBERON:0000925!2.72e-16!169;UBERON:0006595!2.72e-16!169;UBERON:0001007!4.86e-12!155;UBERON:0001555!4.86e-12!155;UBERON:0007026!4.86e-12!155;UBERON:0001004!7.03e-12!72;UBERON:0000077!4.70e-11!130;UBERON:0004921!6.13e-10!129;UBERON:0004185!6.13e-10!129;UBERON:0001041!3.45e-09!98;UBERON:0000161!1.14e-08!35;UBERON:0005156!1.82e-08!59;UBERON:0000990!1.82e-08!59;UBERON:0003100!3.20e-08!41;UBERON:0000464!4.11e-08!104;UBERON:0000166!4.13e-08!21;UBERON:0000466!4.17e-08!126;UBERON:0003133!1.98e-07!48;UBERON:0003134!3.92e-07!37;UBERON:0000474!3.92e-07!37;UBERON:0000165!4.87e-07!28;UBERON:0000930!4.87e-07!28|ontology_enrichment_uberon_v019=UBERON:0000161;1.56e-08;19!UBERON:0000166;1.56e-08;19!UBERON:0000486;2.07e-08;12!UBERON:0000165;5.29e-08;28!UBERON:0001041;1.04e-07;14!UBERON:0001949;1.20e-07;3!UBERON:0000365;1.98e-07;5!UBERON:0001044;7.61e-07;6!UBERON:0003293;7.61e-07;6!UBERON:0003294;7.61e-07;6!UBERON:0010047;7.61e-07;6!UBERON:0003408;7.61e-07;6!UBERON:0000167;7.61e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0000166,6.74e-11,22;UBERON:0000033,8.53e-09,56;UBERON:0000153,1.74e-08,62;UBERON:0007811,1.74e-08,62;UBERON:0000161,2.82e-08,36;UBERON:0004119,6.53e-08,160;UBERON:0000925,6.53e-08,160;UBERON:0006595,6.53e-08,160;UBERON:0001949,1.21e-07,3;UBERON:0000165,1.22e-07,29;UBERON:0000930,1.22e-07,29;UBERON:0000365,1.22e-07,5;UBERON:0001004,2.77e-07,74;UBERON:0003102,2.98e-07,99;UBERON:0001044,7.29e-07,6;UBERON:0003293,7.29e-07,6;UBERON:0003294,7.29e-07,6;UBERON:0010047,7.29e-07,6;UBERON:0000167,7.29e-07,6|phase1_expression=0.726713517082227,1.07050261945492,0.422863212287913,0,0,0,0,0,0,0,0,0.218441372130172,0,0.247532705920093,0.994192127183747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0.111410456885174,0,0,0,0.25618263945135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0,0.434539556882471,0,0,0.189069634328136,0,0.263504357079378,0,1.09288586487763,3.70784442784429,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0.208994966536811,0,0,0,0,0.760272105718513,0.488124115096339,0.367663080345869,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,3.92484646928281,0.993943903390637,0.12663051166458,0,0.286836620748814,0,0,0,0.74000264525148,0,0,0,0.151357427644931,0,0,0.312160076830321,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0.336672227908132,0.125118519871964,0,0,0,0.300476117813194,0,0,0,0.211931901159562,0.300091096084402,0.206105058476878,0,0.18611685633159,0.506328996723799,0.194874010322397,0,0.0920498986422993,0.161646056818812,0,0,0,4.25173876959253,1.36373060295417,2.29443676311203,0.121973706129595,0.132529768321485,0.348581828608555,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0.591534000199219,0.674338760312407,0.241011029883482,0.330881918197182,0.435758888184812,0.474541238222193,0.808987848960987,0.392442930250692,0,0,0,0,0,1.26755034821831,0,0,0,0.245976877086227,0,4.17051084552777,1.1240175325762,2.51322431029077,0.833296006426766,0.325808305310325,0,1.44331342025273,0,0,0.433099343283221,0.462985512576611,0.190254152234598,0,2.57545848628462,0,0,0,1.87467667973554,1.84780341018745,1.98485136139341,0.985143749731331,0.290633938513962,1.91691339582606,0,0,0,0,0.12624243342638,0.063497894292169,0,0,0,0.102827492703324,0.300343057843917,0.285826432630578,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0.301439377059586,0,1.09970290300263,0,0,0,0,1.1486193583411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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C748 | |||
|description=CAGE_peak_at_chr6:138412884..138412951,- | |||
|id=chr6:138412884..138412951,- | |||
|ontology_enrichment_celltype=CL:0000066!6.69e-24!254;CL:0000223!8.76e-14!59;CL:0002076!1.89e-13!43;CL:0002251!1.08e-09!21;CL:0000076!2.64e-08!62;CL:0002321!2.01e-07!248;CL:0002159!2.08e-07!13;CL:0000220!2.63e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.73e-14;42!CL:0002251;3.39e-12;20!CL:0002159;2.13e-11;14!CL:0000244;2.63e-09;4!CL:0000731;2.63e-09;4!CL:0002623;1.14e-08;3!CL:0000622;1.22e-08;5!CL:0002621;1.20e-07;3!CL:0000154;3.65e-07;6!CL:0002166;8.53e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.06e-18,42;CL:0000223,8.46e-18,58;CL:0000066,4.29e-17,253;CL:0002251,3.38e-12,20;CL:0002159,1.33e-11,14;CL:0000244,1.42e-09,4;CL:0000731,1.42e-09,4;CL:0002623,1.17e-08,3;CL:0000622,1.29e-08,5;CL:0002621,1.21e-07,3;CL:0002166,1.90e-07,3;CL:0000154,3.80e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000223;3.38e-09;58 | |||
|ontology_enrichment_disease=DOID:0050687!3.83e-13!143;DOID:305!1.10e-12!106;DOID:14566!7.15e-10!239;DOID:162!2.70e-09!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!2.72e-16!169;UBERON:0000925!2.72e-16!169;UBERON:0006595!2.72e-16!169;UBERON:0001007!4.86e-12!155;UBERON:0001555!4.86e-12!155;UBERON:0007026!4.86e-12!155;UBERON:0001004!7.03e-12!72;UBERON:0000077!4.70e-11!130;UBERON:0004921!6.13e-10!129;UBERON:0004185!6.13e-10!129;UBERON:0001041!3.45e-09!98;UBERON:0000161!1.14e-08!35;UBERON:0005156!1.82e-08!59;UBERON:0000990!1.82e-08!59;UBERON:0003100!3.20e-08!41;UBERON:0000464!4.11e-08!104;UBERON:0000166!4.13e-08!21;UBERON:0000466!4.17e-08!126;UBERON:0003133!1.98e-07!48;UBERON:0003134!3.92e-07!37;UBERON:0000474!3.92e-07!37;UBERON:0000165!4.87e-07!28;UBERON:0000930!4.87e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;1.56e-08;19!UBERON:0000166;1.56e-08;19!UBERON:0000486;2.07e-08;12!UBERON:0000165;5.29e-08;28!UBERON:0001041;1.04e-07;14!UBERON:0001949;1.20e-07;3!UBERON:0000365;1.98e-07;5!UBERON:0001044;7.61e-07;6!UBERON:0003293;7.61e-07;6!UBERON:0003294;7.61e-07;6!UBERON:0010047;7.61e-07;6!UBERON:0003408;7.61e-07;6!UBERON:0000167;7.61e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000166,6.74e-11,22;UBERON:0000033,8.53e-09,56;UBERON:0000153,1.74e-08,62;UBERON:0007811,1.74e-08,62;UBERON:0000161,2.82e-08,36;UBERON:0004119,6.53e-08,160;UBERON:0000925,6.53e-08,160;UBERON:0006595,6.53e-08,160;UBERON:0001949,1.21e-07,3;UBERON:0000165,1.22e-07,29;UBERON:0000930,1.22e-07,29;UBERON:0000365,1.22e-07,5;UBERON:0001004,2.77e-07,74;UBERON:0003102,2.98e-07,99;UBERON:0001044,7.29e-07,6;UBERON:0003293,7.29e-07,6;UBERON:0003294,7.29e-07,6;UBERON:0010047,7.29e-07,6;UBERON:0000167,7.29e-07,6 | |||
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| |||
|short_description=p@chr6:138412884..138412951,- | |||
}} |
Revision as of 18:19, 13 September 2013
Short description: | p@chr6:138412884..138412951, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:138412884..138412951, - |
Coexpression cluster: | C748_amniotic_keratoacanthoma_salivary_Keratinocyte_maxillary_Corneal_esophagus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.06e-18 | 42 |
endodermal cell | 8.46e-18 | 58 |
epithelial cell | 4.29e-17 | 253 |
epithelial cell of alimentary canal | 3.38e-12 | 20 |
general ecto-epithelial cell | 1.33e-11 | 14 |
transitional epithelial cell | 1.42e-09 | 4 |
urothelial cell | 1.42e-09 | 4 |
acinar cell of salivary gland | 1.17e-08 | 3 |
acinar cell | 1.29e-08 | 5 |
gingival epithelial cell | 1.21e-07 | 3 |
epithelial cell of Malassez | 1.90e-07 | 3 |
protein secreting cell | 3.80e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
oral opening | 6.74e-11 | 22 |
head | 8.53e-09 | 56 |
anterior region of body | 1.74e-08 | 62 |
craniocervical region | 1.74e-08 | 62 |
orifice | 2.82e-08 | 36 |
endoderm-derived structure | 6.53e-08 | 160 |
endoderm | 6.53e-08 | 160 |
presumptive endoderm | 6.53e-08 | 160 |
gingival epithelium | 1.21e-07 | 3 |
mouth | 1.22e-07 | 29 |
stomodeum | 1.22e-07 | 29 |
urothelium | 1.22e-07 | 5 |
respiratory system | 2.77e-07 | 74 |
surface structure | 2.98e-07 | 99 |
saliva-secreting gland | 7.29e-07 | 6 |
gland of oral region | 7.29e-07 | 6 |
gland of foregut | 7.29e-07 | 6 |
oral gland | 7.29e-07 | 6 |
oral cavity | 7.29e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.