FFCP PHASE1:Mm9::chr19:45635059..45635134,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=226162|HGNC=|MCL_coexpression_id=208|UniProt=Q8BPA8|association_with_transcript=0bp_to_ENSMUST00000047057,NM_172639,uc008hrd.1,uc008hre.1_5end|description=CAGE_peak_1_at_Dpcd_5end|id=chr19:45635059..45635134,+|ontology_enrichment_celltype=CL:0000117!4.77e-07!23;CL:0000337!4.77e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,4.77e-07,23;CL:0000337,4.77e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.67e-20!52;UBERON:0005068!3.67e-20!52;UBERON:0006241!3.67e-20!52;UBERON:0007135!3.67e-20!52;UBERON:0000955!3.40e-19!50;UBERON:0006238!3.40e-19!50;UBERON:0002616!8.39e-19!49;UBERON:0000033!1.80e-18!63;UBERON:0001017!2.13e-18!73;UBERON:0005743!2.13e-18!73;UBERON:0000073!9.37e-18!75;UBERON:0001016!9.37e-18!75;UBERON:0002346!9.45e-18!71;UBERON:0003075!9.45e-18!71;UBERON:0007284!9.45e-18!71;UBERON:0003080!5.58e-15!40;UBERON:0003056!1.00e-14!49;UBERON:0002780!1.99e-14!39;UBERON:0001890!1.99e-14!39;UBERON:0006240!1.99e-14!39;UBERON:0004121!7.32e-14!102;UBERON:0000924!7.32e-14!102;UBERON:0006601!7.32e-14!102;UBERON:0002020!1.35e-12!34;UBERON:0002791!4.40e-10!29;UBERON:0003528!4.40e-10!29;UBERON:0001893!4.40e-10!29;UBERON:0007811!2.99e-08!86;UBERON:0002619!8.53e-08!17;UBERON:0000025!4.88e-07!114;UBERON:0002021!7.19e-07!10;UBERON:0000411!7.19e-07!10;UBERON:0001950!7.19e-07!10;UBERON:0004111!9.14e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.29e-21,54;UBERON:0001049,3.67e-20,52;UBERON:0005068,3.67e-20,52;UBERON:0006241,3.67e-20,52;UBERON:0007135,3.67e-20,52;UBERON:0001017,2.13e-18,73;UBERON:0002346,4.00e-18,64;UBERON:0003075,4.00e-18,64;UBERON:0007284,4.00e-18,64;UBERON:0001016,9.37e-18,75;UBERON:0000955,4.05e-17,47;UBERON:0006238,4.05e-17,47;UBERON:0002616,9.80e-17,46;UBERON:0010314,2.77e-15,92;UBERON:0003080,5.58e-15,40;UBERON:0010371,5.97e-15,73;UBERON:0003056,1.00e-14,49;UBERON:0002780,1.99e-14,39;UBERON:0001890,1.99e-14,39;UBERON:0006240,1.99e-14,39;UBERON:0004121,1.03e-13,95;UBERON:0000924,1.03e-13,95;UBERON:0006601,1.03e-13,95;UBERON:0002020,1.35e-12,34;UBERON:0003528,4.40e-10,29;UBERON:0002791,4.40e-10,29;UBERON:0001893,4.40e-10,29;UBERON:0002619,8.53e-08,17;UBERON:0000025,4.88e-07,114;UBERON:0002021,7.19e-07,10;UBERON:0000411,7.19e-07,10;UBERON:0001950,7.19e-07,10;UBERON:0004111,9.14e-07,122|phase1_expression=24.8230713012431,9.42233600626275,14.5599756604652,14.215817931421,11.520601788766,9.40123922706583,14.4839837169226,4.64843964389675,0.703943610758334,1.63845168425395,2.39705155515707,3.74929147278081,3.42401459862411,3.4968160967599,5.99597571268193,5.66930748691513,6.29605690315332,7.88655413395594,8.36398044995006,11.0341309467488,32.911753288464,18.4681169233647,23.2467812333652,17.4391740844813,12.8469197397615,14.9300310669905,16.7997178502039,15.9448712187558,17.1021077510736,12.8535366177565,13.9690221712842,10.7955214488137,14.7615549020297,0,14.1537293678125,17.2884031172832,14.2918549383658,15.4856703372656,14.8453715459522,10.9939986234498,5.88231488031014,6.14740936462601,12.1377588257788,17.7514513345564,16.4230628575614,21.6585167550784,12.5182615095686,27.2531445475558,36.6875925166568,43.941157190788,24.3576373628131,43.1257693094915,6.71130424230945,3.62681071005672,2.35265659399725,11.8339340576536,15.4728057566929,11.8604581223812,18.613114399083,17.9856932952491,27.2547503507657,23.7191172448392,18.6751907183339,14.8483453351431,19.7773272513395,16.3410426437603,14.9800055259202,31.1216827310459,9.7468235569969,11.7455166348571,11.1472229516232,40.2767888009363,45.719787976984,11.3916443269907,15.1435844208813,16.5459381589804,83.6880695595354,80.4430229936683,77.2640862278905,20.44237459818,29.7334841707831,30.7338888628488,92.1303896704557,82.1633410646253,66.4672377829124,34.7661730858928,37.1590086885659,29.2647129945722,9.39004797331482,14.81202578093,14.7830889237856,17.2084775396277,12.9194553404473,13.4925797909454,5.84798775702902,10.7526452903361,15.4488862144927,20.792499354523,34.8113246167844,33.213920003972,23.380007682929,34.6481489018658,38.2207859559969,49.7746692207332,26.8448890853906,30.909903587962,29.8259422558722,17.8126852361734,5.69663344023778,11.4300447079915,14.9197381018877,17.354532263792,14.5287763271317,19.2924979907357,11.170927177892,15.0799909595611,6.67426412882809,7.08536848907567,8.84610551949874,8.7354098971601,8.39197770149496,10.6672555689749,7.45567044872489,17.2740670236813,19.6879904404648,9.19645398750929,14.1381846916986,21.5964983157627,14.4860058863294,39.2451475240635,37.972550033946,17.8429180000267,42.0654854865309,41.1701886301832,50.076918738854,51.4304803924792,10.6931332042832,9.95255764880744,18.4487613656583,11.5743020737561,18.9975846725547,16.3230494147766,13.1445354757905,17.4817588689429,14.0835553243249,13.4519406299092,15.8355914505942,26.1290404446406,14.2274875335676,11.7245769704048,13.0203831881322,11.3981780862339,12.7901734643775,9.75106066262066,8.64284972913362,14.52950147775,21.7686088067103,24.4480511758979,19.038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| ||
|EntrezGene=226162 | |||
|HGNC= | |||
|MCL_coexpression_id=208 | |||
|UniProt=Q8BPA8 | |||
|association_with_transcript=0bp_to_ENSMUST00000047057,NM_172639,uc008hrd.1,uc008hre.1_5end | |||
|description=CAGE_peak_1_at_Dpcd_5end | |||
|id=chr19:45635059..45635134,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.77e-07!23;CL:0000337!4.77e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.77e-07,23;CL:0000337,4.77e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.67e-20!52;UBERON:0005068!3.67e-20!52;UBERON:0006241!3.67e-20!52;UBERON:0007135!3.67e-20!52;UBERON:0000955!3.40e-19!50;UBERON:0006238!3.40e-19!50;UBERON:0002616!8.39e-19!49;UBERON:0000033!1.80e-18!63;UBERON:0001017!2.13e-18!73;UBERON:0005743!2.13e-18!73;UBERON:0000073!9.37e-18!75;UBERON:0001016!9.37e-18!75;UBERON:0002346!9.45e-18!71;UBERON:0003075!9.45e-18!71;UBERON:0007284!9.45e-18!71;UBERON:0003080!5.58e-15!40;UBERON:0003056!1.00e-14!49;UBERON:0002780!1.99e-14!39;UBERON:0001890!1.99e-14!39;UBERON:0006240!1.99e-14!39;UBERON:0004121!7.32e-14!102;UBERON:0000924!7.32e-14!102;UBERON:0006601!7.32e-14!102;UBERON:0002020!1.35e-12!34;UBERON:0002791!4.40e-10!29;UBERON:0003528!4.40e-10!29;UBERON:0001893!4.40e-10!29;UBERON:0007811!2.99e-08!86;UBERON:0002619!8.53e-08!17;UBERON:0000025!4.88e-07!114;UBERON:0002021!7.19e-07!10;UBERON:0000411!7.19e-07!10;UBERON:0001950!7.19e-07!10;UBERON:0004111!9.14e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.29e-21,54;UBERON:0001049,3.67e-20,52;UBERON:0005068,3.67e-20,52;UBERON:0006241,3.67e-20,52;UBERON:0007135,3.67e-20,52;UBERON:0001017,2.13e-18,73;UBERON:0002346,4.00e-18,64;UBERON:0003075,4.00e-18,64;UBERON:0007284,4.00e-18,64;UBERON:0001016,9.37e-18,75;UBERON:0000955,4.05e-17,47;UBERON:0006238,4.05e-17,47;UBERON:0002616,9.80e-17,46;UBERON:0010314,2.77e-15,92;UBERON:0003080,5.58e-15,40;UBERON:0010371,5.97e-15,73;UBERON:0003056,1.00e-14,49;UBERON:0002780,1.99e-14,39;UBERON:0001890,1.99e-14,39;UBERON:0006240,1.99e-14,39;UBERON:0004121,1.03e-13,95;UBERON:0000924,1.03e-13,95;UBERON:0006601,1.03e-13,95;UBERON:0002020,1.35e-12,34;UBERON:0003528,4.40e-10,29;UBERON:0002791,4.40e-10,29;UBERON:0001893,4.40e-10,29;UBERON:0002619,8.53e-08,17;UBERON:0000025,4.88e-07,114;UBERON:0002021,7.19e-07,10;UBERON:0000411,7.19e-07,10;UBERON:0001950,7.19e-07,10;UBERON:0004111,9.14e-07,122 | |||
|phase1_expression=24.8230713012431,9.42233600626275,14.5599756604652,14.215817931421,11.520601788766,9.40123922706583,14.4839837169226,4.64843964389675,0.703943610758334,1.63845168425395,2.39705155515707,3.74929147278081,3.42401459862411,3.4968160967599,5.99597571268193,5.66930748691513,6.29605690315332,7.88655413395594,8.36398044995006,11.0341309467488,32.911753288464,18.4681169233647,23.2467812333652,17.4391740844813,12.8469197397615,14.9300310669905,16.7997178502039,15.9448712187558,17.1021077510736,12.8535366177565,13.9690221712842,10.7955214488137,14.7615549020297,0,14.1537293678125,17.2884031172832,14.2918549383658,15.4856703372656,14.8453715459522,10.9939986234498,5.88231488031014,6.14740936462601,12.1377588257788,17.7514513345564,16.4230628575614,21.6585167550784,12.5182615095686,27.2531445475558,36.6875925166568,43.941157190788,24.3576373628131,43.1257693094915,6.71130424230945,3.62681071005672,2.35265659399725,11.8339340576536,15.4728057566929,11.8604581223812,18.613114399083,17.9856932952491,27.2547503507657,23.7191172448392,18.6751907183339,14.8483453351431,19.7773272513395,16.3410426437603,14.9800055259202,31.1216827310459,9.7468235569969,11.7455166348571,11.1472229516232,40.2767888009363,45.719787976984,11.3916443269907,15.1435844208813,16.5459381589804,83.6880695595354,80.4430229936683,77.2640862278905,20.44237459818,29.7334841707831,30.7338888628488,92.1303896704557,82.1633410646253,66.4672377829124,34.7661730858928,37.1590086885659,29.2647129945722,9.39004797331482,14.81202578093,14.7830889237856,17.2084775396277,12.9194553404473,13.4925797909454,5.84798775702902,10.7526452903361,15.4488862144927,20.792499354523,34.8113246167844,33.213920003972,23.380007682929,34.6481489018658,38.2207859559969,49.7746692207332,26.8448890853906,30.909903587962,29.8259422558722,17.8126852361734,5.69663344023778,11.4300447079915,14.9197381018877,17.354532263792,14.5287763271317,19.2924979907357,11.170927177892,15.0799909595611,6.67426412882809,7.08536848907567,8.84610551949874,8.7354098971601,8.39197770149496,10.6672555689749,7.45567044872489,17.2740670236813,19.6879904404648,9.19645398750929,14.1381846916986,21.5964983157627,14.4860058863294,39.2451475240635,37.972550033946,17.8429180000267,42.0654854865309,41.1701886301832,50.076918738854,51.4304803924792,10.6931332042832,9.95255764880744,18.4487613656583,11.5743020737561,18.9975846725547,16.3230494147766,13.1445354757905,17.4817588689429,14.0835553243249,13.4519406299092,15.8355914505942,26.1290404446406,14.2274875335676,11.7245769704048,13.0203831881322,11.3981780862339,12.7901734643775,9.75106066262066,8.64284972913362,14.52950147775,21.7686088067103,24.4480511758979,19.0389544595047,9.73491130916859,16.6513502586578,14.7650890398032,9.46978942340841,16.1346670032871,17.2779166433864,18.835249524783,13.9502168727802,13.8950757416932,9.87359099480883,12.6408947340903,11.8360461936949,8.62579925809461,14.2707574939183,13.4206418760372,38.9036404843635,19.0373532901676,10.2429822724977,8.46241813323342,14.2903127858607,13.7019636397659,9.40732467651281,7.66397393568702,7.11609740303585,11.4135375667535,14.2358718463353,8.89374355509659,11.8127548136127,9.54991065797524,14.2323783596958,15.2799299471218,14.0489732418551,11.1519113022446,14.4147604724342,18.3940105301663,12.3978509240388,19.5505274731502,21.5287260756065,14.3778430775153,13.2164362589698,18.7464887934095,24.9627977267786,21.5945036863151,9.48648406678877,8.67594549723689,8.05891879964132,9.44420872016386,6.08580364165509,5.788251834058,5.34714288740982,6.32931502391783,6.16113861745134,8.23684239564244,4.31304619582064,8.93138274404408,11.5453939052387,8.84026072814891,8.61107584905178,11.0962009913574,19.2143317773269,16.2962614122617,14.0149879740142,16.2955282344181,20.1833613528112,12.730475565578,13.8065311713888,11.9031525193257,11.6650006638581,12.1805579306826,8.6105575075043,17.6972379892997,18.9953480052485,15.0435020924772,19.6028669121054,13.5976420954677,13.277635371514,13.5209005689319,63.0963818652022,56.9648796838107,15.0820149746541,14.1383719234449,12.304820557234,11.7131623288992,7.10897212518236,9.31978312014953,8.24355094104858,8.77537245445381,7.2865926301481,9.05993159525067,7.11518000303742,24.0990987316355,14.9037089468682,14.0671826897132,8.30723492703238,16.6619824202261,10.619611067197,15.7807413500738,16.0231485191318,15.8428266994954,9.7449624650655,11.0676653259814,12.9214146584111,10.1789444253702,15.6858846489277,13.9056173491759,12.6502330289999,10.3135543248187,28.5969268833182,20.887086907632,26.3891714916819,25.2917701337279,26.4236948126988,23.9014215586775,25.6696472139309,32.5777495552621,8.68285319835728,7.20229040936989,12.3495902910779,8.90385765883992,6.94297034792394,7.90099316558842,9.78853220825719,9.35603128546849,12.5336759750836,65.2697063076994,8.88528580148834,14.4470807574256,12.0376442790313,9.60679130723924,6.01454601972511,8.46479240864134,9.00885678967433,7.97723278244851,8.29199842826543,17.184071124272,12.1789357528737,13.825723764625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| |||
|short_description=p1@Dpcd | |||
}} |
Revision as of 17:48, 13 September 2013
Short description: | p1@Dpcd |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dpcd_5end |
Coexpression cluster: | MCL_coexpression_mm9:208 |
Association with transcript: | 0bp_to_ENSMUST00000047057, NM_172639, uc008hrd.1, uc008hre.1_5end |
EntrezGene: | Dpcd |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.77e-07 | 23 |
neuroblast (sensu Vertebrata) | 4.77e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.29e-21 | 54 |
neural tube | 3.67e-20 | 52 |
neural rod | 3.67e-20 | 52 |
future spinal cord | 3.67e-20 | 52 |
neural keel | 3.67e-20 | 52 |
central nervous system | 2.13e-18 | 73 |
neurectoderm | 4.00e-18 | 64 |
neural plate | 4.00e-18 | 64 |
presumptive neural plate | 4.00e-18 | 64 |
nervous system | 9.37e-18 | 75 |
brain | 4.05e-17 | 47 |
future brain | 4.05e-17 | 47 |
regional part of brain | 9.80e-17 | 46 |
structure with developmental contribution from neural crest | 2.77e-15 | 92 |
anterior neural tube | 5.58e-15 | 40 |
ecto-epithelium | 5.97e-15 | 73 |
pre-chordal neural plate | 1.00e-14 | 49 |
regional part of forebrain | 1.99e-14 | 39 |
forebrain | 1.99e-14 | 39 |
future forebrain | 1.99e-14 | 39 |
ectoderm-derived structure | 1.03e-13 | 95 |
ectoderm | 1.03e-13 | 95 |
presumptive ectoderm | 1.03e-13 | 95 |
gray matter | 1.35e-12 | 34 |
brain grey matter | 4.40e-10 | 29 |
regional part of telencephalon | 4.40e-10 | 29 |
telencephalon | 4.40e-10 | 29 |
regional part of cerebral cortex | 8.53e-08 | 17 |
tube | 4.88e-07 | 114 |
occipital lobe | 7.19e-07 | 10 |
visual cortex | 7.19e-07 | 10 |
neocortex | 7.19e-07 | 10 |
anatomical conduit | 9.14e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.