FFCP PHASE1:Hg19::chr6:112575456..112575485,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3910|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6484|TSSclassifier=W|UniProt=E5RFQ2|association_with_transcript=201bp_to_ENST00000521398_5end|coexpression_cluster_id=C4546|description=CAGE_peak_5_at_LAMA4_5end|id=chr6:112575456..112575485,-|ontology_enrichment_celltype=CL:0000055!2.03e-15!180;CL:0000057!1.58e-13!75;CL:0000136!1.74e-10!15;CL:0002620!8.19e-08!23;CL:0000222!9.30e-08!119;CL:0000680!3.44e-07!57;CL:0000056!3.44e-07!57;CL:0000355!3.44e-07!57;CL:0000183!4.68e-07!59;CL:0000187!5.25e-07!54|ontology_enrichment_celltype_v019=CL:0000136;3.04e-14;13!CL:0002620;7.50e-09;23|ontology_enrichment_celltype_v019_2=CL:0000136,1.79e-13,15;CL:0002620,2.23e-09,23;CL:0000057,3.35e-09,76;CL:0000187,8.19e-07,55|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;2.46e-07;5!DOID:450;2.46e-07;5!DOID:66;2.46e-07;5!DOID:423;2.46e-07;5!DOID:0080000;2.46e-07;5!DOID:11722;2.46e-07;5|ontology_enrichment_disease_v019_2=DOID:17,1.05e-07,5;DOID:450,1.05e-07,5;DOID:66,1.05e-07,5;DOID:423,1.05e-07,5;DOID:0080000,1.05e-07,5;DOID:11722,1.05e-07,5|ontology_enrichment_uberon=UBERON:0002049!4.29e-11!79;UBERON:0007798!4.29e-11!79;UBERON:0000475!6.75e-11!365;UBERON:0000914!4.86e-09!83;UBERON:0002329!4.86e-09!83;UBERON:0003077!4.86e-09!83;UBERON:0003059!4.86e-09!83;UBERON:0007282!4.86e-09!83;UBERON:0009618!4.86e-09!83;UBERON:0007285!4.86e-09!83;UBERON:0000477!1.28e-08!286;UBERON:0004535!1.60e-08!110;UBERON:0000055!1.62e-08!69;UBERON:0002385!2.41e-08!63;UBERON:0001015!2.41e-08!63;UBERON:0000383!2.41e-08!63;UBERON:0004290!3.29e-08!70;UBERON:0000468!3.31e-08!659;UBERON:0001009!3.95e-08!113;UBERON:0001134!1.05e-07!61;UBERON:0002036!1.05e-07!61;UBERON:0003082!1.05e-07!61;UBERON:0004872!1.69e-07!84;UBERON:0000119!2.58e-07!312;UBERON:0001981!2.60e-07!60;UBERON:0007500!2.60e-07!60;UBERON:0004537!2.60e-07!60;UBERON:0006965!2.60e-07!60;UBERON:0003102!2.89e-07!95;UBERON:0004111!3.17e-07!241;UBERON:0000483!5.49e-07!309;UBERON:0000486!8.17e-07!82;UBERON:0002199!8.51e-07!45;UBERON:0002416!8.51e-07!45;UBERON:0001637!8.81e-07!42;UBERON:0003509!8.81e-07!42;UBERON:0004572!8.81e-07!42|ontology_enrichment_uberon_v019=UBERON:0004457;3.63e-07;9!UBERON:0000042;3.63e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0002199,9.75e-09,46;UBERON:0002416,9.75e-09,46;UBERON:0003102,1.83e-08,99;UBERON:0007524,5.27e-07,73;UBERON:0003104,9.82e-07,160;UBERON:0009142,9.82e-07,160|phase1_expression=0.908391896352783,6.20891519283851,2.67813367782345,1.0007329835313,7.59833860526389,0.872338524100369,7.59899634504932,3.15859936713415,12.2757245253924,0,0,0,0,1.23766352960047,1.98838425436749,1.34465029290355,0,0.730310090387373,0.975865597581014,0.123121058076788,0,0,0.286235987131057,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,1.0843174571537,3.50936537445123,1.30361867064741,0,0.973269740605272,0.472674085820339,0.221729397462564,0.175669571386252,0.458426764241994,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0,0.56530794192401,1.25849830862972,0.550236083880135,0.626984899610432,0.516833518338658,2.49036383880697,2.67776490211736,0,3.04108842287405,0.976248230192678,0,0.81014194788176,0.625098097988558,0.22452937262617,0.788280363383256,0,0.949265659568129,0.366403487860815,0,0,0,0,0.759783069987479,4.50191214764944,10.8997915884549,1.77334191099179,0.560677600142307,0,0.24666754841716,1.8672662123986,0.404132016209064,0.490385709340376,0.908144565869588,0.576175924479999,0,0.624320153660641,0.570471821544449,1.34503812496621,0.117434498643765,0,0,0.408308342509787,0.245668634623536,1.23990937410919,4.75201142912821,0.989067717114227,0.910161361938026,0,0,0.250237039743928,0.831192346452549,1.75591048352335,0.612975591598039,3.45547535485173,0.340296549480063,1.79389635688862,2.13557388818567,2.54318281391474,3.30100205692843,1.8549455262919,4.12224864073007,1.48893485065272,1.85653965465393,0.779496041289589,2.01947019395292,2.20919756741518,1.93975268182574,2.4850671476163,0.201504196455281,0.508681776931463,0,0,0,0,0,0,0.10366105501537,0,0,0,2.57296375277154,1.38134921352481,4.64367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857839051492628,0,0,0,0,0,1.03993478527958,1.44331342025273,0,0.70445216541493,0.577465791044295,0.462985512576611,0.951270761172991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0.285826432630578,0.448524337381443,0.43596006883328,0.5867062865676,0.387815147273333,0,0,0.797814349754612,1.04007436911366,0.514414748524284,0,0.532844358032199,2.00169191121407,0.542621605391443,0,0.65147236858747,1.06617584622764,0,2.1100756394171,0.871533458600294,2.29937879718731,0,0,0,0,2.29723871668228,0,0.289562613335158,0.205476322550383,0.358121926479791,0,0,0,0,0.76228387266739,0,0,0.5025487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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3910 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6484 | |||
|TSSclassifier=W | |||
|UniProt=E5RFQ2 | |||
|association_with_transcript=201bp_to_ENST00000521398_5end | |||
|coexpression_cluster_id=C4546 | |||
|description=CAGE_peak_5_at_LAMA4_5end | |||
|id=chr6:112575456..112575485,- | |||
|ontology_enrichment_celltype=CL:0000055!2.03e-15!180;CL:0000057!1.58e-13!75;CL:0000136!1.74e-10!15;CL:0002620!8.19e-08!23;CL:0000222!9.30e-08!119;CL:0000680!3.44e-07!57;CL:0000056!3.44e-07!57;CL:0000355!3.44e-07!57;CL:0000183!4.68e-07!59;CL:0000187!5.25e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000136;3.04e-14;13!CL:0002620;7.50e-09;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.79e-13,15;CL:0002620,2.23e-09,23;CL:0000057,3.35e-09,76;CL:0000187,8.19e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.46e-07;5!DOID:450;2.46e-07;5!DOID:66;2.46e-07;5!DOID:423;2.46e-07;5!DOID:0080000;2.46e-07;5!DOID:11722;2.46e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.05e-07,5;DOID:450,1.05e-07,5;DOID:66,1.05e-07,5;DOID:423,1.05e-07,5;DOID:0080000,1.05e-07,5;DOID:11722,1.05e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002049!4.29e-11!79;UBERON:0007798!4.29e-11!79;UBERON:0000475!6.75e-11!365;UBERON:0000914!4.86e-09!83;UBERON:0002329!4.86e-09!83;UBERON:0003077!4.86e-09!83;UBERON:0003059!4.86e-09!83;UBERON:0007282!4.86e-09!83;UBERON:0009618!4.86e-09!83;UBERON:0007285!4.86e-09!83;UBERON:0000477!1.28e-08!286;UBERON:0004535!1.60e-08!110;UBERON:0000055!1.62e-08!69;UBERON:0002385!2.41e-08!63;UBERON:0001015!2.41e-08!63;UBERON:0000383!2.41e-08!63;UBERON:0004290!3.29e-08!70;UBERON:0000468!3.31e-08!659;UBERON:0001009!3.95e-08!113;UBERON:0001134!1.05e-07!61;UBERON:0002036!1.05e-07!61;UBERON:0003082!1.05e-07!61;UBERON:0004872!1.69e-07!84;UBERON:0000119!2.58e-07!312;UBERON:0001981!2.60e-07!60;UBERON:0007500!2.60e-07!60;UBERON:0004537!2.60e-07!60;UBERON:0006965!2.60e-07!60;UBERON:0003102!2.89e-07!95;UBERON:0004111!3.17e-07!241;UBERON:0000483!5.49e-07!309;UBERON:0000486!8.17e-07!82;UBERON:0002199!8.51e-07!45;UBERON:0002416!8.51e-07!45;UBERON:0001637!8.81e-07!42;UBERON:0003509!8.81e-07!42;UBERON:0004572!8.81e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.63e-07;9!UBERON:0000042;3.63e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,9.75e-09,46;UBERON:0002416,9.75e-09,46;UBERON:0003102,1.83e-08,99;UBERON:0007524,5.27e-07,73;UBERON:0003104,9.82e-07,160;UBERON:0009142,9.82e-07,160 | |||
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| |||
|short_description=p5@LAMA4 | |||
}} |
Revision as of 17:27, 13 September 2013
Short description: | p5@LAMA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_LAMA4_5end |
Coexpression cluster: | C4546_mature_Adipocyte_Fibroblast_mesenchymal_vagina_Smooth_normal |
Association with transcript: | 201bp_to_ENST00000521398_5end |
EntrezGene: | LAMA4 |
HGNC: | 6484 |
UniProt: | E5RFQ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.79e-13 | 15 |
skin fibroblast | 2.23e-09 | 23 |
fibroblast | 3.35e-09 | 76 |
muscle cell | 8.19e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
integument | 9.75e-09 | 46 |
integumental system | 9.75e-09 | 46 |
surface structure | 1.83e-08 | 99 |
dense mesenchyme tissue | 5.27e-07 | 73 |
mesenchyme | 9.82e-07 | 160 |
entire embryonic mesenchyme | 9.82e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.05e-07 | 5 |
myotonic disease | 1.05e-07 | 5 |
muscle tissue disease | 1.05e-07 | 5 |
myopathy | 1.05e-07 | 5 |
muscular disease | 1.05e-07 | 5 |
myotonic dystrophy | 1.05e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.