FFCP PHASE1:Hg19::chr6:106546922..106546925,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=639|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9346|TSSclassifier=S|UniProt=Q86WM7|association_with_transcript=107bp_to_ENST00000369089,uc003pre.2_5end|coexpression_cluster_id=C21|description=CAGE_peak_22_at_PRDM1_5end|id=chr6:106546922..106546925,+|ontology_enrichment_celltype=CL:0000084!1.07e-20!25;CL:0000827!1.07e-20!25;CL:0000838!5.59e-18!52;CL:0000542!1.47e-17!53;CL:0000051!1.47e-17!53;CL:0000080!6.56e-17!6;CL:0000791!2.21e-16!18;CL:0000789!2.21e-16!18;CL:0002420!2.21e-16!18;CL:0002419!2.21e-16!18;CL:0000790!2.21e-16!18;CL:0000624!3.58e-11!6;CL:0000738!3.92e-09!140;CL:0000625!1.06e-08!11;CL:0000988!2.60e-08!182;CL:0002087!2.73e-08!119;CL:0002031!7.61e-07!124|ontology_enrichment_celltype_v019=CL:0000895;4.10e-23;1!CL:0000771;2.90e-12;2!CL:0000081;5.52e-09;11!CL:0000084;1.24e-08;25!CL:0000898;1.30e-08;3|ontology_enrichment_celltype_v019_2=CL:0000810,6.40e-23,1;CL:0000895,6.40e-23,1;CL:0002436,6.40e-23,1;CL:0002427,6.40e-23,1;CL:0002428,6.40e-23,1;CL:0002429,6.40e-23,1;CL:0002433,6.40e-23,1;CL:0002431,6.40e-23,1;CL:0002432,6.40e-23,1;CL:0000771,3.24e-12,2;CL:0000893,3.62e-12,2;CL:0002489,3.62e-12,2;CL:0000809,3.62e-12,2;CL:0000808,3.62e-12,2;CL:0000894,3.62e-12,2;CL:0000806,3.62e-12,2;CL:0000807,3.62e-12,2;CL:0000805,3.62e-12,2;CL:0002425,3.62e-12,2;CL:0000081,5.64e-09,11;CL:0000084,1.30e-08,25;CL:0000827,1.30e-08,25;CL:0000898,1.51e-08,3|ontology_enrichment_development_v019=CL:0002427;4.10e-23;1!CL:0002425;2.90e-12;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060060;1.19e-23;1!DOID:0060061;1.19e-23;1!DOID:8691;1.19e-23;1|ontology_enrichment_disease_v019_2=DOID:0060060,1.07e-23,1;DOID:0060061,1.07e-23,1;DOID:8691,1.07e-23,1|ontology_enrichment_uberon=UBERON:0000178!3.36e-09!15;UBERON:0000179!3.36e-09!15;UBERON:0000463!3.36e-09!15|ontology_enrichment_uberon_v019=UBERON:0002331;1.47e-20;10!UBERON:0000178;5.89e-14;15!UBERON:0000179;5.89e-14;15!UBERON:0000463;5.89e-14;15!UBERON:0000478;5.73e-09;24!UBERON:0002390;6.07e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0002331,1.28e-20,10;UBERON:0000358,1.28e-20,10;UBERON:0000307,1.28e-20,10;UBERON:0000091,1.28e-20,10;UBERON:0000087,1.28e-20,10;UBERON:0007010,1.28e-20,10;UBERON:0007806,1.28e-20,10;UBERON:0008780,1.28e-20,10;UBERON:0005728,1.28e-20,10;UBERON:0000178,5.39e-14,15;UBERON:0000179,5.39e-14,15;UBERON:0000463,5.39e-14,15;UBERON:0000478,5.43e-09,24|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,0.822405995998037,0.334372990781356,0,0,0,0.111410456885174,0.883817722424512,1.77227115666897,1.35401931882508,0.25618263945135,0.260118695119756,0,0,0,0,0,0,0.113309342697566,1.14966148080576,0.34362744548263,0.253019692019503,0,0,0,0.150575119077773,0.511946444617674,0,0,0,0.201606743224732,0.802320587350522,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431255149719035,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659215496907038,0,0,0,0,0,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55825354416746,1.97702302314405,4.17687798021822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41753560563109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39972270880846,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233|short_description=p22@PRDM1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=639 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9346 | |||
|TSSclassifier=S | |||
|UniProt=Q86WM7 | |||
|association_with_transcript=107bp_to_ENST00000369089,uc003pre.2_5end | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_22_at_PRDM1_5end | |||
|id=chr6:106546922..106546925,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.07e-20!25;CL:0000827!1.07e-20!25;CL:0000838!5.59e-18!52;CL:0000542!1.47e-17!53;CL:0000051!1.47e-17!53;CL:0000080!6.56e-17!6;CL:0000791!2.21e-16!18;CL:0000789!2.21e-16!18;CL:0002420!2.21e-16!18;CL:0002419!2.21e-16!18;CL:0000790!2.21e-16!18;CL:0000624!3.58e-11!6;CL:0000738!3.92e-09!140;CL:0000625!1.06e-08!11;CL:0000988!2.60e-08!182;CL:0002087!2.73e-08!119;CL:0002031!7.61e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000895;4.10e-23;1!CL:0000771;2.90e-12;2!CL:0000081;5.52e-09;11!CL:0000084;1.24e-08;25!CL:0000898;1.30e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000810,6.40e-23,1;CL:0000895,6.40e-23,1;CL:0002436,6.40e-23,1;CL:0002427,6.40e-23,1;CL:0002428,6.40e-23,1;CL:0002429,6.40e-23,1;CL:0002433,6.40e-23,1;CL:0002431,6.40e-23,1;CL:0002432,6.40e-23,1;CL:0000771,3.24e-12,2;CL:0000893,3.62e-12,2;CL:0002489,3.62e-12,2;CL:0000809,3.62e-12,2;CL:0000808,3.62e-12,2;CL:0000894,3.62e-12,2;CL:0000806,3.62e-12,2;CL:0000807,3.62e-12,2;CL:0000805,3.62e-12,2;CL:0002425,3.62e-12,2;CL:0000081,5.64e-09,11;CL:0000084,1.30e-08,25;CL:0000827,1.30e-08,25;CL:0000898,1.51e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002427;4.10e-23;1!CL:0002425;2.90e-12;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;1.19e-23;1!DOID:0060061;1.19e-23;1!DOID:8691;1.19e-23;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,1.07e-23,1;DOID:0060061,1.07e-23,1;DOID:8691,1.07e-23,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!3.36e-09!15;UBERON:0000179!3.36e-09!15;UBERON:0000463!3.36e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;1.47e-20;10!UBERON:0000178;5.89e-14;15!UBERON:0000179;5.89e-14;15!UBERON:0000463;5.89e-14;15!UBERON:0000478;5.73e-09;24!UBERON:0002390;6.07e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,1.28e-20,10;UBERON:0000358,1.28e-20,10;UBERON:0000307,1.28e-20,10;UBERON:0000091,1.28e-20,10;UBERON:0000087,1.28e-20,10;UBERON:0007010,1.28e-20,10;UBERON:0007806,1.28e-20,10;UBERON:0008780,1.28e-20,10;UBERON:0005728,1.28e-20,10;UBERON:0000178,5.39e-14,15;UBERON:0000179,5.39e-14,15;UBERON:0000463,5.39e-14,15;UBERON:0000478,5.43e-09,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,0.822405995998037,0.334372990781356,0,0,0,0.111410456885174,0.883817722424512,1.77227115666897,1.35401931882508,0.25618263945135,0.260118695119756,0,0,0,0,0,0,0.113309342697566,1.14966148080576,0.34362744548263,0.253019692019503,0,0,0,0.150575119077773,0.511946444617674,0,0,0,0.201606743224732,0.802320587350522,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431255149719035,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659215496907038,0,0,0,0,0,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55825354416746,1.97702302314405,4.17687798021822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41753560563109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39972270880846,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p22@PRDM1 | |||
}} |
Revision as of 17:13, 13 September 2013
Short description: | p22@PRDM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_22_at_PRDM1_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 107bp_to_ENST00000369089, uc003pre.2_5end |
EntrezGene: | PRDM1 |
HGNC: | 9346 |
UniProt: | Q86WM7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta thymocyte | 6.40e-23 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 6.40e-23 | 1 |
mature CD4 single-positive thymocyte | 6.40e-23 | 1 |
resting double-positive thymocyte | 6.40e-23 | 1 |
double-positive blast | 6.40e-23 | 1 |
CD69-positive double-positive thymocyte | 6.40e-23 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 6.40e-23 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 6.40e-23 | 1 |
CD24-positive, CD4 single-positive thymocyte | 6.40e-23 | 1 |
eosinophil | 3.24e-12 | 2 |
thymocyte | 3.62e-12 | 2 |
double negative thymocyte | 3.62e-12 | 2 |
double-positive, alpha-beta thymocyte | 3.62e-12 | 2 |
DN4 thymocyte | 3.62e-12 | 2 |
DN1 thymic pro-T cell | 3.62e-12 | 2 |
DN2 thymocyte | 3.62e-12 | 2 |
DN3 thymocyte | 3.62e-12 | 2 |
immature single positive thymocyte | 3.62e-12 | 2 |
early T lineage precursor | 3.62e-12 | 2 |
blood cell | 5.64e-09 | 11 |
T cell | 1.30e-08 | 25 |
pro-T cell | 1.30e-08 | 25 |
naive T cell | 1.51e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 1.28e-20 | 10 |
blastocyst | 1.28e-20 | 10 |
blastula | 1.28e-20 | 10 |
bilaminar disc | 1.28e-20 | 10 |
inner cell mass | 1.28e-20 | 10 |
cleaving embryo | 1.28e-20 | 10 |
connecting stalk | 1.28e-20 | 10 |
inner cell mass derived epiblast | 1.28e-20 | 10 |
extraembryonic mesoderm | 1.28e-20 | 10 |
blood | 5.39e-14 | 15 |
haemolymphatic fluid | 5.39e-14 | 15 |
organism substance | 5.39e-14 | 15 |
extraembryonic structure | 5.43e-09 | 24 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 1.07e-23 | 1 |
cutaneous T cell lymphoma | 1.07e-23 | 1 |
mycosis fungoides | 1.07e-23 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.