FFCP PHASE1:Hg19::chr5:94619994..94620023,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79772|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26183|TSSclassifier=S|UniProt=|association_with_transcript=-290bp_to_ENST00000503301_5end|coexpression_cluster_id=C11|description=CAGE_peak_12_at_MCTP1_5end|id=chr5:94619994..94620023,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000540;7.01e-08;6!CL:0000404;7.01e-08;6|ontology_enrichment_celltype_v019_2=CL:0000540,7.25e-08,6;CL:0000031,7.25e-08,6;CL:0000404,7.25e-08,6|ontology_enrichment_development_v019=UBERON:0006215;5.20e-118;3!CL:0000031;7.01e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002619!3.15e-43!22;UBERON:0000956!1.12e-37!25;UBERON:0000203!1.12e-37!25;UBERON:0001950!3.68e-37!20;UBERON:0001869!1.12e-35!32;UBERON:0001893!2.51e-33!34;UBERON:0002020!4.25e-33!34;UBERON:0003528!4.25e-33!34;UBERON:0001049!1.28e-32!57;UBERON:0005068!1.28e-32!57;UBERON:0006241!1.28e-32!57;UBERON:0007135!1.28e-32!57;UBERON:0002616!2.70e-31!59;UBERON:0002791!7.42e-31!33;UBERON:0002780!7.17e-27!41;UBERON:0001890!7.17e-27!41;UBERON:0006240!7.17e-27!41;UBERON:0003075!1.37e-26!86;UBERON:0007284!1.37e-26!86;UBERON:0005743!1.69e-26!86;UBERON:0001017!3.43e-26!82;UBERON:0003080!4.03e-26!42;UBERON:0000955!2.36e-25!69;UBERON:0006238!2.36e-25!69;UBERON:0002346!4.51e-25!90;UBERON:0000073!2.67e-23!94;UBERON:0001016!2.67e-23!94;UBERON:0003056!3.95e-22!61;UBERON:0007023!1.88e-16!115;UBERON:0000033!3.74e-16!123;UBERON:0000153!4.59e-15!129;UBERON:0007811!4.59e-15!129;UBERON:0001871!4.60e-15!7;UBERON:0000200!3.60e-14!6;UBERON:0004121!1.37e-11!169;UBERON:0000924!3.76e-11!173;UBERON:0006601!3.76e-11!173;UBERON:0001872!4.07e-11!5;UBERON:0002771!5.87e-11!3;UBERON:0002021!1.27e-10!5;UBERON:0000064!2.87e-10!219;UBERON:0004733!7.99e-10!12;UBERON:0002028!7.99e-10!12;UBERON:0007277!7.99e-10!12;UBERON:0002680!2.17e-09!9;UBERON:0001895!2.17e-09!9;UBERON:0010092!2.17e-09!9;UBERON:0004732!5.21e-09!13;UBERON:0001954!4.07e-08!2;UBERON:0003022!4.07e-08!2;UBERON:0002421!4.07e-08!2;UBERON:0002600!4.07e-08!2;UBERON:0003076!1.05e-07!15;UBERON:0003057!1.05e-07!15;UBERON:0000349!8.42e-07!5|ontology_enrichment_uberon_v019=UBERON:0002037;1.22e-59;6!UBERON:0002680;3.80e-40;9!UBERON:0001895;3.80e-40;9!UBERON:0004733;2.22e-30;12!UBERON:0002028;2.22e-30;12!UBERON:0004732;4.00e-28;13!UBERON:0000073;2.79e-10;53!UBERON:0002616;2.79e-10;53!UBERON:0001872;2.86e-09;5!UBERON:0001016;1.79e-08;83!UBERON:0000955;4.67e-07;68|ontology_enrichment_uberon_v019_2=UBERON:0002037,9.96e-60,6;UBERON:0006215,9.96e-60,6;UBERON:0002680,3.32e-40,9;UBERON:0001895,3.32e-40,9;UBERON:0010092,3.32e-40,9;UBERON:0004733,2.01e-30,12;UBERON:0002028,2.01e-30,12;UBERON:0007277,2.01e-30,12;UBERON:0004732,3.65e-28,13;UBERON:0003076,1.52e-24,15;UBERON:0003057,1.52e-24,15;UBERON:0001017,1.45e-12,81;UBERON:0000073,1.93e-12,53;UBERON:0002616,1.93e-12,53;UBERON:0001049,7.99e-12,56;UBERON:0005068,7.99e-12,56;UBERON:0006241,7.99e-12,56;UBERON:0007135,7.99e-12,56;UBERON:0001016,2.13e-11,89;UBERON:0000955,9.44e-10,68;UBERON:0006238,9.44e-10,68;UBERON:0001872,2.97e-09,5;UBERON:0003075,2.54e-08,82;UBERON:0007284,2.54e-08,82;UBERON:0002346,5.76e-08,86|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0.209658645508376,0,0.150176892841506,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142283686696828,0,0,0,0,0,0.842391534340376,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,1.52581736317083,3.64911557773041,2.36438095162838,0.219385397153973,0,0.139423744278603,0.0769502585037971,0.455768223388005,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.7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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79772 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26183 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-290bp_to_ENST00000503301_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_12_at_MCTP1_5end | |||
|id=chr5:94619994..94620023,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000540;7.01e-08;6!CL:0000404;7.01e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.25e-08,6;CL:0000031,7.25e-08,6;CL:0000404,7.25e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.20e-118;3!CL:0000031;7.01e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!3.15e-43!22;UBERON:0000956!1.12e-37!25;UBERON:0000203!1.12e-37!25;UBERON:0001950!3.68e-37!20;UBERON:0001869!1.12e-35!32;UBERON:0001893!2.51e-33!34;UBERON:0002020!4.25e-33!34;UBERON:0003528!4.25e-33!34;UBERON:0001049!1.28e-32!57;UBERON:0005068!1.28e-32!57;UBERON:0006241!1.28e-32!57;UBERON:0007135!1.28e-32!57;UBERON:0002616!2.70e-31!59;UBERON:0002791!7.42e-31!33;UBERON:0002780!7.17e-27!41;UBERON:0001890!7.17e-27!41;UBERON:0006240!7.17e-27!41;UBERON:0003075!1.37e-26!86;UBERON:0007284!1.37e-26!86;UBERON:0005743!1.69e-26!86;UBERON:0001017!3.43e-26!82;UBERON:0003080!4.03e-26!42;UBERON:0000955!2.36e-25!69;UBERON:0006238!2.36e-25!69;UBERON:0002346!4.51e-25!90;UBERON:0000073!2.67e-23!94;UBERON:0001016!2.67e-23!94;UBERON:0003056!3.95e-22!61;UBERON:0007023!1.88e-16!115;UBERON:0000033!3.74e-16!123;UBERON:0000153!4.59e-15!129;UBERON:0007811!4.59e-15!129;UBERON:0001871!4.60e-15!7;UBERON:0000200!3.60e-14!6;UBERON:0004121!1.37e-11!169;UBERON:0000924!3.76e-11!173;UBERON:0006601!3.76e-11!173;UBERON:0001872!4.07e-11!5;UBERON:0002771!5.87e-11!3;UBERON:0002021!1.27e-10!5;UBERON:0000064!2.87e-10!219;UBERON:0004733!7.99e-10!12;UBERON:0002028!7.99e-10!12;UBERON:0007277!7.99e-10!12;UBERON:0002680!2.17e-09!9;UBERON:0001895!2.17e-09!9;UBERON:0010092!2.17e-09!9;UBERON:0004732!5.21e-09!13;UBERON:0001954!4.07e-08!2;UBERON:0003022!4.07e-08!2;UBERON:0002421!4.07e-08!2;UBERON:0002600!4.07e-08!2;UBERON:0003076!1.05e-07!15;UBERON:0003057!1.05e-07!15;UBERON:0000349!8.42e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.22e-59;6!UBERON:0002680;3.80e-40;9!UBERON:0001895;3.80e-40;9!UBERON:0004733;2.22e-30;12!UBERON:0002028;2.22e-30;12!UBERON:0004732;4.00e-28;13!UBERON:0000073;2.79e-10;53!UBERON:0002616;2.79e-10;53!UBERON:0001872;2.86e-09;5!UBERON:0001016;1.79e-08;83!UBERON:0000955;4.67e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,9.96e-60,6;UBERON:0006215,9.96e-60,6;UBERON:0002680,3.32e-40,9;UBERON:0001895,3.32e-40,9;UBERON:0010092,3.32e-40,9;UBERON:0004733,2.01e-30,12;UBERON:0002028,2.01e-30,12;UBERON:0007277,2.01e-30,12;UBERON:0004732,3.65e-28,13;UBERON:0003076,1.52e-24,15;UBERON:0003057,1.52e-24,15;UBERON:0001017,1.45e-12,81;UBERON:0000073,1.93e-12,53;UBERON:0002616,1.93e-12,53;UBERON:0001049,7.99e-12,56;UBERON:0005068,7.99e-12,56;UBERON:0006241,7.99e-12,56;UBERON:0007135,7.99e-12,56;UBERON:0001016,2.13e-11,89;UBERON:0000955,9.44e-10,68;UBERON:0006238,9.44e-10,68;UBERON:0001872,2.97e-09,5;UBERON:0003075,2.54e-08,82;UBERON:0007284,2.54e-08,82;UBERON:0002346,5.76e-08,86 | |||
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|short_description=p12@MCTP1 | |||
}} |
Revision as of 16:57, 13 September 2013
Short description: | p12@MCTP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_MCTP1_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -290bp_to_ENST00000503301_5end |
EntrezGene: | MCTP1 |
HGNC: | 26183 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.25e-08 | 6 |
neuroblast | 7.25e-08 | 6 |
electrically signaling cell | 7.25e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 9.96e-60 | 6 |
rhombic lip | 9.96e-60 | 6 |
regional part of metencephalon | 3.32e-40 | 9 |
metencephalon | 3.32e-40 | 9 |
future metencephalon | 3.32e-40 | 9 |
segmental subdivision of hindbrain | 2.01e-30 | 12 |
hindbrain | 2.01e-30 | 12 |
presumptive hindbrain | 2.01e-30 | 12 |
segmental subdivision of nervous system | 3.65e-28 | 13 |
posterior neural tube | 1.52e-24 | 15 |
chordal neural plate | 1.52e-24 | 15 |
central nervous system | 1.45e-12 | 81 |
regional part of nervous system | 1.93e-12 | 53 |
regional part of brain | 1.93e-12 | 53 |
neural tube | 7.99e-12 | 56 |
neural rod | 7.99e-12 | 56 |
future spinal cord | 7.99e-12 | 56 |
neural keel | 7.99e-12 | 56 |
nervous system | 2.13e-11 | 89 |
brain | 9.44e-10 | 68 |
future brain | 9.44e-10 | 68 |
parietal lobe | 2.97e-09 | 5 |
neural plate | 2.54e-08 | 82 |
presumptive neural plate | 2.54e-08 | 82 |
neurectoderm | 5.76e-08 | 86 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.