FFCP PHASE1:Mm9::chr18:66162266..66162291,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=70361|HGNC=|MCL_coexpression_id=3157|UniProt=Q9D0F3|association_with_transcript=0bp_to_ENSMUST00000048260,ENSMUST00000120461,NM_001172062,NM_027400,uc008ffn.2,uc008ffo.2_5end|description=CAGE_peak_1_at_Lman1_5end|id=chr18:66162266..66162291,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002365!2.40e-12!25;UBERON:0002330!2.40e-12!25;UBERON:0005172!5.57e-11!49;UBERON:0005173!5.57e-11!49;UBERON:0002417!5.57e-11!49;UBERON:0000916!5.57e-11!49;UBERON:0005177!8.43e-11!85;UBERON:0002100!1.08e-10!98;UBERON:0000466!1.37e-10!79;UBERON:0002107!1.45e-10!22;UBERON:0007499!1.45e-10!22;UBERON:0006925!1.45e-10!22;UBERON:0009497!1.45e-10!22;UBERON:0000015!1.45e-10!22;UBERON:0002423!1.45e-10!22;UBERON:0006235!1.45e-10!22;UBERON:0008835!1.45e-10!22;UBERON:0003894!1.45e-10!22;UBERON:0004161!1.45e-10!22;UBERON:0008836!1.45e-10!22;UBERON:0005256!1.45e-10!47;UBERON:0009854!5.71e-10!23;UBERON:0009856!5.71e-10!23;UBERON:0009569!8.33e-09!66;UBERON:0003914!1.40e-08!47;UBERON:0002108!1.87e-08!16;UBERON:0001264!7.78e-08!12;UBERON:0003922!7.78e-08!12;UBERON:0002114!7.78e-08!12;UBERON:0003923!7.78e-08!12;UBERON:0003924!7.78e-08!12;UBERON:0003921!7.78e-08!12;UBERON:0001045!4.03e-07!13;UBERON:0003104!4.82e-07!131;UBERON:0009142!4.82e-07!131;UBERON:0001048!7.22e-07!147;UBERON:0000160!9.85e-07!43|ontology_enrichment_uberon_v019_2=UBERON:0005177,5.39e-14,79;UBERON:0002100,5.88e-13,90;UBERON:0002365,2.40e-12,25;UBERON:0002330,2.40e-12,25;UBERON:0003104,7.00e-12,61;UBERON:0009142,7.00e-12,61;UBERON:0005172,5.57e-11,49;UBERON:0005173,5.57e-11,49;UBERON:0002417,5.57e-11,49;UBERON:0000916,5.57e-11,49;UBERON:0002107,1.45e-10,22;UBERON:0007499,1.45e-10,22;UBERON:0006925,1.45e-10,22;UBERON:0009497,1.45e-10,22;UBERON:0000015,1.45e-10,22;UBERON:0002423,1.45e-10,22;UBERON:0006235,1.45e-10,22;UBERON:0008835,1.45e-10,22;UBERON:0003894,1.45e-10,22;UBERON:0004161,1.45e-10,22;UBERON:0008836,1.45e-10,22;UBERON:0009854,5.71e-10,23;UBERON:0009856,5.71e-10,23;UBERON:0005256,5.91e-10,45;UBERON:0009569,8.33e-09,66;UBERON:0003914,1.40e-08,47;UBERON:0001264,7.78e-08,12|phase1_expression=89.2029078373702,75.378688050102,45.9549231783431,36.9006337794333,41.0734498556005,60.1007793444565,48.1242039626783,16.0112921067555,6.75785866328,8.66038747391376,29.2782725665614,41.1624340415936,13.6960583944965,12.8507991555926,46.3022568923771,40.2925782105754,37.7763414189199,23.0287380711514,21.6640805097067,16.1268067683251,43.9673810081031,36.6383609931267,39.7023679491182,62.3970448894286,50.2406325537102,65.4624439091123,51.2606775429299,66.1496684345679,74.2991570074422,92.9991178814144,86.4748991555688,24.131165591466,16.6067492647834,31.6963362030877,40.1503751454272,38.8989070138872,31.4420808644048,11.3003540298965,16.4080422349998,21.4644735029257,11.1763982725893,10.2456822743767,11.6522484727477,66.5994167090804,65.793628361465,81.86185146411,35.9900018400098,27.0351193911754,39.7631990749394,50.1629139611651,61.8739983584102,24.4379359420452,8.38913030288682,6.5282592781021,7.73015738027667,119.368378320679,122.922845733727,76.3194696570615,28.5266209812033,25.3915670050576,23.4517619297286,50.1489907462315,45.3540346016681,15.7482450524245,17.7995945262055,17.0515227587064,13.4820049733282,18.0582603501131,19.1825782770684,21.4659441947388,19.9808713283813,22.2807767834967,21.8659855542097,19.2310554767478,19.3607851456837,23.8996884518605,19.82085857989,27.5804650264005,25.0378649207677,32.5759130693579,31.2887741120241,30.7338888628488,24.5681039121215,32.0774687718058,29.6428600687012,31.5252586456824,33.5997166685883,36.5342913817589,50.1307399865678,69.6769784184562,59.4222201838439,162.620112749482,184.2722314348,232.612075595899,437.299528942281,450.71504841992,99.8559827136756,76.5232148375479,64.6867151461143,49.4675404314476,92.2524399537257,70.5795625778748,50.9610479413291,71.1066703153331,40.9168067511195,50.4186132295446,37.9143333761088,111.557650485522,74.3151726067383,85.2057878232094,64.5365415570025,83.7280065358388,105.160666748763,96.7639352347837,78.1964902452437,99.527940333103,79.8439745782028,86.759614151947,38.0382537338446,127.634044608506,85.2448261257119,92.6111733488274,55.9175283654366,36.0120380324203,34.977600037847,86.5999417157125,36.4237978497998,34.1944556666242,45.9994222004494,32.0551968326321,27.4500361691176,15.9581027183338,30.9407289942252,29.407277592988,24.5189892580281,25.9586020908412,90.5351944629312,84.0991121324229,90.7274702776892,64.816091613034,85.619251469459,72.6490650009774,83.9089524892927,77.763686003229,83.4807844586793,89.4233767588251,81.2393951932849,82.785078636485,61.6524459787929,70.7256739827644,88.8553177027942,94.9117521411399,90.6434032475449,120.146997450147,126.761796027293,74.8368843237534,60.3903341089382,67.9398474782848,66.7784223579643,63.5876121683991,66.1363489146691,66.2628386176535,67.4722496417849,57.4551556702419,56.9245646554426,58.36602013235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| ||
|EntrezGene=70361 | |||
|HGNC= | |||
|MCL_coexpression_id=3157 | |||
|UniProt=Q9D0F3 | |||
|association_with_transcript=0bp_to_ENSMUST00000048260,ENSMUST00000120461,NM_001172062,NM_027400,uc008ffn.2,uc008ffo.2_5end | |||
|description=CAGE_peak_1_at_Lman1_5end | |||
|id=chr18:66162266..66162291,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002365!2.40e-12!25;UBERON:0002330!2.40e-12!25;UBERON:0005172!5.57e-11!49;UBERON:0005173!5.57e-11!49;UBERON:0002417!5.57e-11!49;UBERON:0000916!5.57e-11!49;UBERON:0005177!8.43e-11!85;UBERON:0002100!1.08e-10!98;UBERON:0000466!1.37e-10!79;UBERON:0002107!1.45e-10!22;UBERON:0007499!1.45e-10!22;UBERON:0006925!1.45e-10!22;UBERON:0009497!1.45e-10!22;UBERON:0000015!1.45e-10!22;UBERON:0002423!1.45e-10!22;UBERON:0006235!1.45e-10!22;UBERON:0008835!1.45e-10!22;UBERON:0003894!1.45e-10!22;UBERON:0004161!1.45e-10!22;UBERON:0008836!1.45e-10!22;UBERON:0005256!1.45e-10!47;UBERON:0009854!5.71e-10!23;UBERON:0009856!5.71e-10!23;UBERON:0009569!8.33e-09!66;UBERON:0003914!1.40e-08!47;UBERON:0002108!1.87e-08!16;UBERON:0001264!7.78e-08!12;UBERON:0003922!7.78e-08!12;UBERON:0002114!7.78e-08!12;UBERON:0003923!7.78e-08!12;UBERON:0003924!7.78e-08!12;UBERON:0003921!7.78e-08!12;UBERON:0001045!4.03e-07!13;UBERON:0003104!4.82e-07!131;UBERON:0009142!4.82e-07!131;UBERON:0001048!7.22e-07!147;UBERON:0000160!9.85e-07!43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,5.39e-14,79;UBERON:0002100,5.88e-13,90;UBERON:0002365,2.40e-12,25;UBERON:0002330,2.40e-12,25;UBERON:0003104,7.00e-12,61;UBERON:0009142,7.00e-12,61;UBERON:0005172,5.57e-11,49;UBERON:0005173,5.57e-11,49;UBERON:0002417,5.57e-11,49;UBERON:0000916,5.57e-11,49;UBERON:0002107,1.45e-10,22;UBERON:0007499,1.45e-10,22;UBERON:0006925,1.45e-10,22;UBERON:0009497,1.45e-10,22;UBERON:0000015,1.45e-10,22;UBERON:0002423,1.45e-10,22;UBERON:0006235,1.45e-10,22;UBERON:0008835,1.45e-10,22;UBERON:0003894,1.45e-10,22;UBERON:0004161,1.45e-10,22;UBERON:0008836,1.45e-10,22;UBERON:0009854,5.71e-10,23;UBERON:0009856,5.71e-10,23;UBERON:0005256,5.91e-10,45;UBERON:0009569,8.33e-09,66;UBERON:0003914,1.40e-08,47;UBERON:0001264,7.78e-08,12 | |||
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| |||
|short_description=p1@Lman1 | |||
}} |
Revision as of 16:37, 13 September 2013
Short description: | p1@Lman1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lman1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3157 |
Association with transcript: | 0bp_to_ENSMUST00000048260, ENSMUST00000120461, NM_001172062, NM_027400, uc008ffn.2, uc008ffo.2_5end |
EntrezGene: | Lman1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trunk region element | 5.39e-14 | 79 |
trunk | 5.88e-13 | 90 |
exocrine gland | 2.40e-12 | 25 |
exocrine system | 2.40e-12 | 25 |
mesenchyme | 7.00e-12 | 61 |
entire embryonic mesenchyme | 7.00e-12 | 61 |
abdomen element | 5.57e-11 | 49 |
abdominal segment element | 5.57e-11 | 49 |
abdominal segment of trunk | 5.57e-11 | 49 |
abdomen | 5.57e-11 | 49 |
liver | 1.45e-10 | 22 |
epithelial sac | 1.45e-10 | 22 |
digestive gland | 1.45e-10 | 22 |
epithelium of foregut-midgut junction | 1.45e-10 | 22 |
anatomical boundary | 1.45e-10 | 22 |
hepatobiliary system | 1.45e-10 | 22 |
foregut-midgut junction | 1.45e-10 | 22 |
hepatic diverticulum | 1.45e-10 | 22 |
liver primordium | 1.45e-10 | 22 |
septum transversum | 1.45e-10 | 22 |
liver bud | 1.45e-10 | 22 |
digestive tract diverticulum | 5.71e-10 | 23 |
sac | 5.71e-10 | 23 |
trunk mesenchyme | 5.91e-10 | 45 |
subdivision of trunk | 8.33e-09 | 66 |
epithelial tube | 1.40e-08 | 47 |
pancreas | 7.78e-08 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.