FFCP PHASE1:Hg19::chr5:78365577..78365599,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23743|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1048|TSSclassifier=S|UniProt=E5RH96,E5RGH5,B7Z516|association_with_transcript=0bp_to_ENST00000518666,ENST00000518758,ENST00000519743,ENST00000521567,ENST00000523472,uc003kft.2,uc011cth.1_5end|coexpression_cluster_id=C5|description=CAGE_peak_1_at_BHMT2_5end|id=chr5:78365577..78365599,+|ontology_enrichment_celltype=CL:0000136!2.29e-09!15;CL:0000057!5.08e-09!75|ontology_enrichment_celltype_v019=CL:0000136;5.56e-12;13!CL:0002334;3.74e-07;12!CL:0000182;6.69e-07;12|ontology_enrichment_celltype_v019_2=CL:0000136,8.90e-10,15;CL:0002334,4.41e-07,12;CL:0000182,6.72e-07,12|ontology_enrichment_development_v019=UBERON:0004161;1.95e-07;11!UBERON:0003104;6.49e-07;31|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.51e-31!115;UBERON:0000475!4.33e-21!365;UBERON:0003075!4.34e-18!86;UBERON:0007284!4.34e-18!86;UBERON:0002346!4.29e-16!90;UBERON:0000481!2.16e-13!347;UBERON:0001049!3.31e-13!57;UBERON:0005068!3.31e-13!57;UBERON:0006241!3.31e-13!57;UBERON:0007135!3.31e-13!57;UBERON:0002616!4.00e-13!59;UBERON:0000477!4.37e-13!286;UBERON:0000119!6.50e-13!312;UBERON:0003056!9.37e-13!61;UBERON:0000483!1.36e-12!309;UBERON:0000033!3.98e-12!123;UBERON:0000468!4.61e-12!659;UBERON:0000153!5.20e-12!129;UBERON:0007811!5.20e-12!129;UBERON:0005743!5.05e-11!86;UBERON:0004111!9.94e-11!241;UBERON:0004121!1.35e-10!169;UBERON:0000073!1.77e-10!94;UBERON:0001016!1.77e-10!94;UBERON:0000062!2.46e-10!511;UBERON:0000025!5.07e-10!194;UBERON:0000467!6.37e-10!625;UBERON:0000480!8.99e-10!626;UBERON:0000955!9.60e-10!69;UBERON:0006238!9.60e-10!69;UBERON:0000924!1.15e-09!173;UBERON:0006601!1.15e-09!173;UBERON:0001017!2.00e-09!82;UBERON:0003080!2.39e-09!42;UBERON:0002780!8.44e-09!41;UBERON:0001890!8.44e-09!41;UBERON:0006240!8.44e-09!41;UBERON:0000479!1.34e-08!787;UBERON:0000064!8.75e-08!219;UBERON:0002100!1.96e-07!216;UBERON:0005256!3.24e-07!143|ontology_enrichment_uberon_v019=UBERON:0007023;9.32e-09;114!UBERON:0000073;7.51e-07;53!UBERON:0002616;7.51e-07;53!UBERON:0002104;9.03e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.86e-33,114;UBERON:0003075,6.13e-18,82;UBERON:0007284,6.13e-18,82;UBERON:0010314,8.20e-17,132;UBERON:0002346,3.02e-16,86;UBERON:0003056,1.54e-13,61;UBERON:0010371,9.26e-13,104;UBERON:0001049,1.17e-11,56;UBERON:0005068,1.17e-11,56;UBERON:0006241,1.17e-11,56;UBERON:0007135,1.17e-11,56;UBERON:0000479,7.02e-11,773;UBERON:0004121,2.64e-10,171;UBERON:0000924,2.64e-10,171;UBERON:0006601,2.64e-10,171;UBERON:0000073,2.82e-10,53;UBERON:0002616,2.82e-10,53;UBERON:0000955,7.21e-09,68;UBERON:0006238,7.21e-09,68;UBERON:0001017,1.04e-08,81;UBERON:0002780,2.01e-08,41;UBERON:0001890,2.01e-08,41;UBERON:0003080,2.01e-08,41;UBERON:0006240,2.01e-08,41;UBERON:0001016,2.07e-08,89;UBERON:0000483,4.17e-08,306;UBERON:0000119,9.20e-08,309;UBERON:0004111,2.90e-07,240;UBERON:0000970,6.08e-07,21;UBERON:0002104,6.08e-07,21|phase1_expression=3.08853244759946,12.631930909568,9.72585388262201,9.00659685178174,6.25745532198203,5.23403114460221,5.06599756336621,1.89515962028049,4.70134130759709,0.245733936501509,0,0,0,2.35156070624089,1.32558950291166,1.34465029290355,0,0,0,0.492484232307152,0.408001382488506,0,0.572471974262113,0.410623275218653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,1.34140171940727,0,3.61439152384566,1.50401373190767,2.31754430337318,2.3858578411533,0.486634870302636,2.07976597760949,1.99556457716308,3.68906099911129,97.3829426325493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0.805658634218294,0.760272105718513,0.24406205754817,0.367663080345869,0,0.982297011124877,2.02076435363553,3.71617885594963,0,0,0,0,0,0,0.496971951695318,0.12663051166458,1.19168262731897,0.573673241497627,0.354668382198357,0.560677600142307,0,0,0.622422070799533,0,0.163461903113459,1.05950199351452,1.15235184896,2.10889288650417,0.312160076830321,1.1409436430889,0,0.352303495931295,1.61872944368132,1.12360645361799,1.22492502752936,0.368502951935304,1.65321249881225,5.94001428641027,5.68713937340681,2.73048408581408,0,0.841680569770331,0.875829639103749,0.831192346452549,3.07284334616587,1.5324389789951,4.8076178850111,0.113432183160021,0.89694817844431,0.85422955527427,0.635795703478686,0.900273288253207,1.64884046781502,1.54584324027377,1.11670113798954,0,0.194874010322397,0.757301322732344,1.65689817556139,1.13152239773168,3.90510551768276,1.41052937518696,0.67824236924195,0,0,0,0.243947412259191,0.530119073285941,0,0,0.252320850875628,0,6.25798129319264,10.2918550110862,4.14404764057442,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,461.388326751464,140.544291984901,266.446247913313,0,0,1.54411029268673,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23743 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1048 | |||
|TSSclassifier=S | |||
|UniProt=E5RH96,E5RGH5,B7Z516 | |||
|association_with_transcript=0bp_to_ENST00000518666,ENST00000518758,ENST00000519743,ENST00000521567,ENST00000523472,uc003kft.2,uc011cth.1_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_1_at_BHMT2_5end | |||
|id=chr5:78365577..78365599,+ | |||
|ontology_enrichment_celltype=CL:0000136!2.29e-09!15;CL:0000057!5.08e-09!75 | |||
|ontology_enrichment_celltype_v019=CL:0000136;5.56e-12;13!CL:0002334;3.74e-07;12!CL:0000182;6.69e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,8.90e-10,15;CL:0002334,4.41e-07,12;CL:0000182,6.72e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.95e-07;11!UBERON:0003104;6.49e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.51e-31!115;UBERON:0000475!4.33e-21!365;UBERON:0003075!4.34e-18!86;UBERON:0007284!4.34e-18!86;UBERON:0002346!4.29e-16!90;UBERON:0000481!2.16e-13!347;UBERON:0001049!3.31e-13!57;UBERON:0005068!3.31e-13!57;UBERON:0006241!3.31e-13!57;UBERON:0007135!3.31e-13!57;UBERON:0002616!4.00e-13!59;UBERON:0000477!4.37e-13!286;UBERON:0000119!6.50e-13!312;UBERON:0003056!9.37e-13!61;UBERON:0000483!1.36e-12!309;UBERON:0000033!3.98e-12!123;UBERON:0000468!4.61e-12!659;UBERON:0000153!5.20e-12!129;UBERON:0007811!5.20e-12!129;UBERON:0005743!5.05e-11!86;UBERON:0004111!9.94e-11!241;UBERON:0004121!1.35e-10!169;UBERON:0000073!1.77e-10!94;UBERON:0001016!1.77e-10!94;UBERON:0000062!2.46e-10!511;UBERON:0000025!5.07e-10!194;UBERON:0000467!6.37e-10!625;UBERON:0000480!8.99e-10!626;UBERON:0000955!9.60e-10!69;UBERON:0006238!9.60e-10!69;UBERON:0000924!1.15e-09!173;UBERON:0006601!1.15e-09!173;UBERON:0001017!2.00e-09!82;UBERON:0003080!2.39e-09!42;UBERON:0002780!8.44e-09!41;UBERON:0001890!8.44e-09!41;UBERON:0006240!8.44e-09!41;UBERON:0000479!1.34e-08!787;UBERON:0000064!8.75e-08!219;UBERON:0002100!1.96e-07!216;UBERON:0005256!3.24e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;9.32e-09;114!UBERON:0000073;7.51e-07;53!UBERON:0002616;7.51e-07;53!UBERON:0002104;9.03e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.86e-33,114;UBERON:0003075,6.13e-18,82;UBERON:0007284,6.13e-18,82;UBERON:0010314,8.20e-17,132;UBERON:0002346,3.02e-16,86;UBERON:0003056,1.54e-13,61;UBERON:0010371,9.26e-13,104;UBERON:0001049,1.17e-11,56;UBERON:0005068,1.17e-11,56;UBERON:0006241,1.17e-11,56;UBERON:0007135,1.17e-11,56;UBERON:0000479,7.02e-11,773;UBERON:0004121,2.64e-10,171;UBERON:0000924,2.64e-10,171;UBERON:0006601,2.64e-10,171;UBERON:0000073,2.82e-10,53;UBERON:0002616,2.82e-10,53;UBERON:0000955,7.21e-09,68;UBERON:0006238,7.21e-09,68;UBERON:0001017,1.04e-08,81;UBERON:0002780,2.01e-08,41;UBERON:0001890,2.01e-08,41;UBERON:0003080,2.01e-08,41;UBERON:0006240,2.01e-08,41;UBERON:0001016,2.07e-08,89;UBERON:0000483,4.17e-08,306;UBERON:0000119,9.20e-08,309;UBERON:0004111,2.90e-07,240;UBERON:0000970,6.08e-07,21;UBERON:0002104,6.08e-07,21 | |||
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| |||
|short_description=p1@BHMT2 | |||
}} |
Revision as of 16:34, 13 September 2013
Short description: | p1@BHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BHMT2_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000518666, ENST00000518758, ENST00000519743, ENST00000521567, ENST00000523472, uc003kft.2, uc011cth.1_5end |
EntrezGene: | BHMT2 |
HGNC: | 1048 |
UniProt: | E5RH96E5RGH5B7Z516 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 8.90e-10 | 15 |
preadipocyte | 4.41e-07 | 12 |
hepatocyte | 6.72e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.86e-33 | 114 |
neural plate | 6.13e-18 | 82 |
presumptive neural plate | 6.13e-18 | 82 |
structure with developmental contribution from neural crest | 8.20e-17 | 132 |
neurectoderm | 3.02e-16 | 86 |
pre-chordal neural plate | 1.54e-13 | 61 |
ecto-epithelium | 9.26e-13 | 104 |
neural tube | 1.17e-11 | 56 |
neural rod | 1.17e-11 | 56 |
future spinal cord | 1.17e-11 | 56 |
neural keel | 1.17e-11 | 56 |
tissue | 7.02e-11 | 773 |
ectoderm-derived structure | 2.64e-10 | 171 |
ectoderm | 2.64e-10 | 171 |
presumptive ectoderm | 2.64e-10 | 171 |
regional part of nervous system | 2.82e-10 | 53 |
regional part of brain | 2.82e-10 | 53 |
brain | 7.21e-09 | 68 |
future brain | 7.21e-09 | 68 |
central nervous system | 1.04e-08 | 81 |
regional part of forebrain | 2.01e-08 | 41 |
forebrain | 2.01e-08 | 41 |
anterior neural tube | 2.01e-08 | 41 |
future forebrain | 2.01e-08 | 41 |
nervous system | 2.07e-08 | 89 |
epithelium | 4.17e-08 | 306 |
cell layer | 9.20e-08 | 309 |
anatomical conduit | 2.90e-07 | 240 |
eye | 6.08e-07 | 21 |
visual system | 6.08e-07 | 21 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.