FFCP PHASE1:Mm9::chr18:45428530..45428570,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=140492|HGNC=|MCL_coexpression_id=19|UniProt=Q3UF29|association_with_transcript=16bp_to_uc008evd.1_5end|description=CAGE_peak_3_at_Kcnn2_5end|id=chr18:45428530..45428570,+|ontology_enrichment_celltype=CL:0000117!3.03e-07!23;CL:0000337!3.03e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,8.18e-09,23;CL:0000337,8.18e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007100!9.12e-09!18;UBERON:0000948!9.12e-09!18;UBERON:0005498!9.12e-09!18;UBERON:0004140!9.12e-09!18;UBERON:0009881!9.12e-09!18;UBERON:0004141!9.12e-09!18;UBERON:0003084!9.12e-09!18;UBERON:0007005!9.12e-09!18;UBERON:0004139!9.12e-09!18;UBERON:0004291!9.12e-09!18|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.56e-14,92;UBERON:0007100,7.31e-14,18;UBERON:0000948,7.31e-14,18;UBERON:0005498,7.31e-14,18;UBERON:0004140,7.31e-14,18;UBERON:0009881,7.31e-14,18;UBERON:0004141,7.31e-14,18;UBERON:0003084,7.31e-14,18;UBERON:0007005,7.31e-14,18;UBERON:0004139,7.31e-14,18;UBERON:0004291,7.31e-14,18;UBERON:0004535,1.26e-09,23;UBERON:0001009,1.26e-09,23;UBERON:0003103,9.36e-09,43;UBERON:0000073,8.60e-08,54;UBERON:0002346,5.53e-07,64;UBERON:0003075,5.53e-07,64;UBERON:0007284,5.53e-07,64;UBERON:0001049,8.71e-07,52;UBERON:0005068,8.71e-07,52;UBERON:0006241,8.71e-07,52;UBERON:0007135,8.71e-07,52|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41621522601718,3.70293685490423,2.53532561402472,0,0,0,0,0,0,0,0.207379224616955,0,0.630974884054146,1.71390590642282,2.42955395046775,0.979926393719632,1.15014565221884,0,5.50579404996943,4.34136949489638,1.84327839907492,1.45074916503213,1.55528994124096,1.04182674111352,2.51264699101243,3.93933827022176,1.83357897332172,5.59794312399969,2.98980529678116,3.35519002485541,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0.150722640552623,0,0,0.494389935468748,0,0,2.10296904931632,1.32504911076236,2.42437626567611,0,1.75668478206928,1.25668024088073,0,0,0,0,4.19413790333504,1.83000241127451,2.89005009859588,1.91206752211504,2.30143911597297,4.57133698031032,3.73154905055843,0.305518091550949,0.248813941220186,0.252722758433675,3.15662783829711,0.130120442962704,0.689706313300419,0,1.05493372485001,0.748401490664606,1.7935920839879,1.03071897015702,8.53721123438752,0,0.378212160335639,0.175951124163949,0.43839146485515,0.278047249225598,0.348252166522167,0.411564272815887,0.398068533636986,0,0,0,7.87077935634907,6.3322036194896,7.02242039697958,9.94327889457883,12.199382368339,10.4901636763417,12.7893669612724,12.3405764643825,8.99093136227205,13.3293478429919,11.4917224855367,14.8355921468916,13.1579988682799,14.0512073786272,11.541752013392,0.210289948564127,0.205809224758569,0,0.264450566663544,0.426576501070468,0.232236671860439,0.902072229254653,0.605050573870028,0.444756087689741,0.380451252225118,0,0.164698954724011,0.251335208800269,1.39269530428806,0.58489226135736,0.898819408654221,0,0.398282546508734,0,0,0,0.610953983535943,0,0,0,0,0,0,0,0.500535317148282,0,0,0,0.241177159752417,0,0,0,0,1.43768206527355,0.372140947668503,0,0,0.358794827043824,0,0.369506380333209,0.757965647081939,0.325929952884052,0.339490171550376,0.469380496577004,1.00503754465089,0.952174563544055,0,0.788175720530955,0.8858587585951,1.11618338060241,0.327726629431476,0.518054945597687,0.289298117163023,0,0,0,0,3.85321415970701,3.16471553798949,0,3.53459298086122,0.315508219416257,0,0.430846795465598,0.238968797952552,0,0,0,0,0.395287777946524,10.6036034419196,0,0.178065603667255,0,0.659880491890142,0,0.242780636154981,0.302323556964751,0.377210159511796,0.295301892880773,0.922305443831782,0.516856586336442,0,0.712994756769443,0,0,0,0.680879211507576,0,0,0,0,0,0,0,0,0,0.441056796109924,0.98931751764888,0.484393280087717,0.784068024066026,0.477489376012546,0.656563598980245,0.582961673259701,3.8939313422207,0,1.44470807574256,0.555583582109135,0,0,0,0,0,0,0.954670618015114,0.632671987162271,1.62655573701479,0.540026704109006,0.627264888043406,0.87345025498471,0.539457385539283,0.743881101528023,0.785267825952089,0.90730481304255,0,0,0.747582730219894,0.165458490457098,0.194451188344048,0.258319646955462,0,0.117357238645754,0.13020438484395,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0,0.0762068066549998,0,0,0,0,6.57518112484113,0,0,0,1.35232715822533,0.187682475451182,0.183151624267265,0,0,0.564751842617067,0.920650473014354,0,0.68741272937475,4.11049511862385,2.2661816921691,2.02506750069542,2.2516060161211,0.453142408984205,2.07104124700728,0.103787347584177,1.19707462020309,0.682934423016537,2.18796045361465,0.628839487883947,0.735374033800057,3.55594764482584,2.67845574410562,1.28367683836726,1.26348605881899,3.54871019846336,2.07488975524684,1.87283014939765,2.17685518176556,1.60819313075717,2.85776214769844,2.66533949673168,3.27945674788299,1.23625770240992,4.12156976376312,0.685738504770831,0.35495161231867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| ||
|EntrezGene=140492 | |||
|HGNC= | |||
|MCL_coexpression_id=19 | |||
|UniProt=Q3UF29 | |||
|association_with_transcript=16bp_to_uc008evd.1_5end | |||
|description=CAGE_peak_3_at_Kcnn2_5end | |||
|id=chr18:45428530..45428570,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.03e-07!23;CL:0000337!3.03e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.18e-09,23;CL:0000337,8.18e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007100!9.12e-09!18;UBERON:0000948!9.12e-09!18;UBERON:0005498!9.12e-09!18;UBERON:0004140!9.12e-09!18;UBERON:0009881!9.12e-09!18;UBERON:0004141!9.12e-09!18;UBERON:0003084!9.12e-09!18;UBERON:0007005!9.12e-09!18;UBERON:0004139!9.12e-09!18;UBERON:0004291!9.12e-09!18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.56e-14,92;UBERON:0007100,7.31e-14,18;UBERON:0000948,7.31e-14,18;UBERON:0005498,7.31e-14,18;UBERON:0004140,7.31e-14,18;UBERON:0009881,7.31e-14,18;UBERON:0004141,7.31e-14,18;UBERON:0003084,7.31e-14,18;UBERON:0007005,7.31e-14,18;UBERON:0004139,7.31e-14,18;UBERON:0004291,7.31e-14,18;UBERON:0004535,1.26e-09,23;UBERON:0001009,1.26e-09,23;UBERON:0003103,9.36e-09,43;UBERON:0000073,8.60e-08,54;UBERON:0002346,5.53e-07,64;UBERON:0003075,5.53e-07,64;UBERON:0007284,5.53e-07,64;UBERON:0001049,8.71e-07,52;UBERON:0005068,8.71e-07,52;UBERON:0006241,8.71e-07,52;UBERON:0007135,8.71e-07,52 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41621522601718,3.70293685490423,2.53532561402472,0,0,0,0,0,0,0,0.207379224616955,0,0.630974884054146,1.71390590642282,2.42955395046775,0.979926393719632,1.15014565221884,0,5.50579404996943,4.34136949489638,1.84327839907492,1.45074916503213,1.55528994124096,1.04182674111352,2.51264699101243,3.93933827022176,1.83357897332172,5.59794312399969,2.98980529678116,3.35519002485541,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0.150722640552623,0,0,0.494389935468748,0,0,2.10296904931632,1.32504911076236,2.42437626567611,0,1.75668478206928,1.25668024088073,0,0,0,0,4.19413790333504,1.83000241127451,2.89005009859588,1.91206752211504,2.30143911597297,4.57133698031032,3.73154905055843,0.305518091550949,0.248813941220186,0.252722758433675,3.15662783829711,0.130120442962704,0.689706313300419,0,1.05493372485001,0.748401490664606,1.7935920839879,1.03071897015702,8.53721123438752,0,0.378212160335639,0.175951124163949,0.43839146485515,0.278047249225598,0.348252166522167,0.411564272815887,0.398068533636986,0,0,0,7.87077935634907,6.3322036194896,7.02242039697958,9.94327889457883,12.199382368339,10.4901636763417,12.7893669612724,12.3405764643825,8.99093136227205,13.3293478429919,11.4917224855367,14.8355921468916,13.1579988682799,14.0512073786272,11.541752013392,0.210289948564127,0.205809224758569,0,0.264450566663544,0.426576501070468,0.232236671860439,0.902072229254653,0.605050573870028,0.444756087689741,0.380451252225118,0,0.164698954724011,0.251335208800269,1.39269530428806,0.58489226135736,0.898819408654221,0,0.398282546508734,0,0,0,0.610953983535943,0,0,0,0,0,0,0,0.500535317148282,0,0,0,0.241177159752417,0,0,0,0,1.43768206527355,0.372140947668503,0,0,0.358794827043824,0,0.369506380333209,0.757965647081939,0.325929952884052,0.339490171550376,0.469380496577004,1.00503754465089,0.952174563544055,0,0.788175720530955,0.8858587585951,1.11618338060241,0.327726629431476,0.518054945597687,0.289298117163023,0,0,0,0,3.85321415970701,3.16471553798949,0,3.53459298086122,0.315508219416257,0,0.430846795465598,0.238968797952552,0,0,0,0,0.395287777946524,10.6036034419196,0,0.178065603667255,0,0.659880491890142,0,0.242780636154981,0.302323556964751,0.377210159511796,0.295301892880773,0.922305443831782,0.516856586336442,0,0.712994756769443,0,0,0,0.680879211507576,0,0,0,0,0,0,0,0,0,0.441056796109924,0.98931751764888,0.484393280087717,0.784068024066026,0.477489376012546,0.656563598980245,0.582961673259701,3.8939313422207,0,1.44470807574256,0.555583582109135,0,0,0,0,0,0,0.954670618015114,0.632671987162271,1.62655573701479,0.540026704109006,0.627264888043406,0.87345025498471,0.539457385539283,0.743881101528023,0.785267825952089,0.90730481304255,0,0,0.747582730219894,0.165458490457098,0.194451188344048,0.258319646955462,0,0.117357238645754,0.13020438484395,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0,0.0762068066549998,0,0,0,0,6.57518112484113,0,0,0,1.35232715822533,0.187682475451182,0.183151624267265,0,0,0.564751842617067,0.920650473014354,0,0.68741272937475,4.11049511862385,2.2661816921691,2.02506750069542,2.2516060161211,0.453142408984205,2.07104124700728,0.103787347584177,1.19707462020309,0.682934423016537,2.18796045361465,0.628839487883947,0.735374033800057,3.55594764482584,2.67845574410562,1.28367683836726,1.26348605881899,3.54871019846336,2.07488975524684,1.87283014939765,2.17685518176556,1.60819313075717,2.85776214769844,2.66533949673168,3.27945674788299,1.23625770240992,4.12156976376312,0.685738504770831,0.354951612318675,3.09967046931517,2.47088908274958,2.4468438907986,1.60767754994185,1.46342378298218,1.8414879800649,2.8518863907631,5.05028044491965,2.01679530811096,2.1670986122624,0.409231043169689,1.85924209423159,1.15743966588685,0.499621155875892,1.63752125911786,1.93383948643468,2.29545998482612,1.76473135295612,0.927471342481686 | |||
|short_description=p3@Kcnn2 | |||
}} |
Revision as of 16:15, 13 September 2013
Short description: | p3@Kcnn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Kcnn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:19 |
Association with transcript: | 16bp_to_uc008evd.1_5end |
EntrezGene: | Kcnn2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.18e-09 | 23 |
neuroblast (sensu Vertebrata) | 8.18e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.56e-14 | 92 |
primary circulatory organ | 7.31e-14 | 18 |
heart | 7.31e-14 | 18 |
primitive heart tube | 7.31e-14 | 18 |
primary heart field | 7.31e-14 | 18 |
anterior lateral plate mesoderm | 7.31e-14 | 18 |
heart tube | 7.31e-14 | 18 |
heart primordium | 7.31e-14 | 18 |
cardiac mesoderm | 7.31e-14 | 18 |
cardiogenic plate | 7.31e-14 | 18 |
heart rudiment | 7.31e-14 | 18 |
cardiovascular system | 1.26e-09 | 23 |
circulatory system | 1.26e-09 | 23 |
compound organ | 9.36e-09 | 43 |
regional part of nervous system | 8.60e-08 | 54 |
neurectoderm | 5.53e-07 | 64 |
neural plate | 5.53e-07 | 64 |
presumptive neural plate | 5.53e-07 | 64 |
neural tube | 8.71e-07 | 52 |
neural rod | 8.71e-07 | 52 |
future spinal cord | 8.71e-07 | 52 |
neural keel | 8.71e-07 | 52 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.