FFCP PHASE1:Hg19::chr5:56469724..56469731,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=65056|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29520|TSSclassifier=S|UniProt=D4PHA4,Q86WP2|association_with_transcript=-43bp_to_ENST00000424459,NM_001203246,NM_022913,uc003jrh.3,uc003jri.3,uc010iwg.2_5end|description=CAGE_peak_10_at_GPBP1_5end|id=chr5:56469724..56469731,+|ontology_enrichment_celltype=CL:0000738!2.37e-19!140;CL:0002031!4.88e-16!124;CL:0002057!2.73e-15!42;CL:0002087!5.42e-15!119;CL:0000860!1.09e-14!45;CL:0002032!1.22e-14!165;CL:0000837!1.22e-14!165;CL:0000037!1.96e-14!172;CL:0000566!1.96e-14!172;CL:0000988!3.62e-13!182;CL:0000766!1.86e-10!76;CL:0000557!9.92e-10!71;CL:0000839!2.65e-09!70;CL:0002009!6.53e-09!65;CL:0000763!1.94e-08!112;CL:0000049!1.94e-08!112;CL:0002194!5.06e-08!63;CL:0000576!5.06e-08!63;CL:0000040!5.06e-08!63;CL:0000559!5.06e-08!63;CL:0000542!7.28e-07!53;CL:0000051!7.28e-07!53|ontology_enrichment_celltype_v019=CL:0000860;1.32e-25;33!CL:0002057;1.32e-25;33!CL:0000473;9.90e-21;39!CL:0000234;9.90e-21;39!CL:0000576;5.94e-12;48!CL:0000453;1.29e-11;5!CL:0000623;7.00e-09;3!CL:0000766;1.64e-08;69!CL:0002087;8.83e-08;104!CL:0000738;6.64e-07;136|ontology_enrichment_celltype_v019_2=CL:0000738,3.88e-25,136;CL:0000860,2.79e-22,42;CL:0002057,2.79e-22,42;CL:0002032,1.81e-20,161;CL:0000837,1.81e-20,161;CL:0002031,6.55e-20,120;CL:0000037,2.08e-19,168;CL:0000473,3.60e-19,48;CL:0000234,3.60e-19,48;CL:0000766,2.05e-18,72;CL:0000988,3.63e-18,177;CL:0000839,1.07e-17,66;CL:0000557,2.16e-17,67;CL:0002087,7.83e-17,115;CL:0000763,1.61e-16,108;CL:0000049,1.61e-16,108;CL:0002194,8.10e-15,59;CL:0000576,8.10e-15,59;CL:0000040,8.10e-15,59;CL:0000559,8.10e-15,59;CL:0002009,2.95e-14,61;CL:0000453,1.16e-11,5;CL:0000623,5.97e-09,3;CL:0000825,5.97e-09,3;CL:0000134,2.68e-07,354;CL:0002320,4.71e-07,361|ontology_enrichment_development_v019=CL:0002057;5.13e-17;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.52e-12!102;UBERON:0003061!1.52e-12!102;UBERON:0002193!2.54e-11!112;UBERON:0002371!7.55e-09!80;UBERON:0001474!7.07e-08!86;UBERON:0002405!8.93e-07!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.67e-16,98;UBERON:0003061,1.67e-16,98;UBERON:0002371,5.35e-15,76;UBERON:0002193,1.21e-14,108;UBERON:0001474,1.09e-13,82;UBERON:0002405,1.65e-13,93;UBERON:0004765,3.23e-12,90;UBERON:0001434,1.05e-10,100|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0.229240217243854,0,0.550975469195755,0.786728553697808,0,0.464448369948228,0,0,0.369754010166788,0.774672005803016,0.426507697462265,0,0,0,0.868043482863407,0,0.32389366601898,0,0.436194716338694,0.755751887377619,0.242584061187816,0.929716147622738,0.822335776043652,2.16794459626573,1.43846196161075,1.2808035326455,0,3.10271112662957,3.87290810150296,2.70852973188684,0.376484679085209,0,0.224723484445085,0.918251677112708,0.320929027076094,4.47535988059329,0.329851300186716,0.997318288108159,0.426224750532694,1.7412554317715,1.13477044938228,1.86846674698672,1.50749199154046,2.08593167368081,0.868755378820466,0.605399502633369,2.20966581592539,0.949387162322653,0.422510572623884,0,0.209658645508376,0,0.300353785683013,0,0,0.19891667719909,0.182664153764634,0,0,0,0.853460445133014,0,0,0,0,1.1384259382189,0,2.6759125968766,0,0.560508562981536,0,0,0.393010762749165,0.616804496998528,0.167186495390678,0,0.473447805734733,0,0.222820913770347,1.17842362989935,0.886135578334485,0.812411591295047,0.128091319725675,0,0,0.829050053357545,0,0.296573126324121,0,1.04535523804977,0.226618685395132,0,0,0,0,0,0,0.602300476311091,0,0,0,0,0.403213486449465,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0.516833518338658,0,0,0,0.760272105718513,0,0.367663080345869,0,0.0892997282840798,0.22452937262617,0,0,0,0,2.63560834872127,0,0,0.496971951695318,0,0.529636723252875,0,0,0,0,0.49333509683432,0,0.269421344139376,0,0,0,0,0,0,0,0,0.161872944368132,0.421352420106746,0,0,0,1.18800285728205,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.662648841607426,0.348581828608555,0.207322110030741,0.756962552626885,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0.231860809950154,0,0,0,0.190254152234598,0,0,0,0,0.148631162288728,0,0.16798212819886,0.425325291727159,0.0895585227028483,0,0,0,0.088048434013226,2.28060927094849,0.432359860250884,2.39860623510122,0.063497894292169,0,0,0,0,0.300343057843917,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0.336255431980582,1.18218456121156,0.431255149719035,1.66845947163673,0,0,0,0,0.637938751653163,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.431428401637234,0.10672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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=65056 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29520 | |||
|TSSclassifier=S | |||
|UniProt=D4PHA4,Q86WP2 | |||
|association_with_transcript=-43bp_to_ENST00000424459,NM_001203246,NM_022913,uc003jrh.3,uc003jri.3,uc010iwg.2_5end | |||
|description=CAGE_peak_10_at_GPBP1_5end | |||
|id=chr5:56469724..56469731,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.37e-19!140;CL:0002031!4.88e-16!124;CL:0002057!2.73e-15!42;CL:0002087!5.42e-15!119;CL:0000860!1.09e-14!45;CL:0002032!1.22e-14!165;CL:0000837!1.22e-14!165;CL:0000037!1.96e-14!172;CL:0000566!1.96e-14!172;CL:0000988!3.62e-13!182;CL:0000766!1.86e-10!76;CL:0000557!9.92e-10!71;CL:0000839!2.65e-09!70;CL:0002009!6.53e-09!65;CL:0000763!1.94e-08!112;CL:0000049!1.94e-08!112;CL:0002194!5.06e-08!63;CL:0000576!5.06e-08!63;CL:0000040!5.06e-08!63;CL:0000559!5.06e-08!63;CL:0000542!7.28e-07!53;CL:0000051!7.28e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.32e-25;33!CL:0002057;1.32e-25;33!CL:0000473;9.90e-21;39!CL:0000234;9.90e-21;39!CL:0000576;5.94e-12;48!CL:0000453;1.29e-11;5!CL:0000623;7.00e-09;3!CL:0000766;1.64e-08;69!CL:0002087;8.83e-08;104!CL:0000738;6.64e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.88e-25,136;CL:0000860,2.79e-22,42;CL:0002057,2.79e-22,42;CL:0002032,1.81e-20,161;CL:0000837,1.81e-20,161;CL:0002031,6.55e-20,120;CL:0000037,2.08e-19,168;CL:0000473,3.60e-19,48;CL:0000234,3.60e-19,48;CL:0000766,2.05e-18,72;CL:0000988,3.63e-18,177;CL:0000839,1.07e-17,66;CL:0000557,2.16e-17,67;CL:0002087,7.83e-17,115;CL:0000763,1.61e-16,108;CL:0000049,1.61e-16,108;CL:0002194,8.10e-15,59;CL:0000576,8.10e-15,59;CL:0000040,8.10e-15,59;CL:0000559,8.10e-15,59;CL:0002009,2.95e-14,61;CL:0000453,1.16e-11,5;CL:0000623,5.97e-09,3;CL:0000825,5.97e-09,3;CL:0000134,2.68e-07,354;CL:0002320,4.71e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;5.13e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.52e-12!102;UBERON:0003061!1.52e-12!102;UBERON:0002193!2.54e-11!112;UBERON:0002371!7.55e-09!80;UBERON:0001474!7.07e-08!86;UBERON:0002405!8.93e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.67e-16,98;UBERON:0003061,1.67e-16,98;UBERON:0002371,5.35e-15,76;UBERON:0002193,1.21e-14,108;UBERON:0001474,1.09e-13,82;UBERON:0002405,1.65e-13,93;UBERON:0004765,3.23e-12,90;UBERON:0001434,1.05e-10,100 | |||
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| |||
|short_description=p10@GPBP1 | |||
}} |
Revision as of 15:57, 13 September 2013
Short description: | p10@GPBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_GPBP1_5end |
Coexpression cluster: | NA |
Association with transcript: | -43bp_to_ENST00000424459, NM_001203246, NM_022913, uc003jrh.3, uc003jri.3, uc010iwg.2_5end |
EntrezGene: | GPBP1 |
HGNC: | 29520 |
UniProt: | D4PHA4Q86WP2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.88e-25 | 136 |
classical monocyte | 2.79e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.79e-22 | 42 |
hematopoietic oligopotent progenitor cell | 1.81e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.81e-20 | 161 |
hematopoietic lineage restricted progenitor cell | 6.55e-20 | 120 |
hematopoietic stem cell | 2.08e-19 | 168 |
defensive cell | 3.60e-19 | 48 |
phagocyte | 3.60e-19 | 48 |
myeloid leukocyte | 2.05e-18 | 72 |
hematopoietic cell | 3.63e-18 | 177 |
myeloid lineage restricted progenitor cell | 1.07e-17 | 66 |
granulocyte monocyte progenitor cell | 2.16e-17 | 67 |
nongranular leukocyte | 7.83e-17 | 115 |
myeloid cell | 1.61e-16 | 108 |
common myeloid progenitor | 1.61e-16 | 108 |
monopoietic cell | 8.10e-15 | 59 |
monocyte | 8.10e-15 | 59 |
monoblast | 8.10e-15 | 59 |
promonocyte | 8.10e-15 | 59 |
macrophage dendritic cell progenitor | 2.95e-14 | 61 |
Langerhans cell | 1.16e-11 | 5 |
natural killer cell | 5.97e-09 | 3 |
pro-NK cell | 5.97e-09 | 3 |
mesenchymal cell | 2.68e-07 | 354 |
connective tissue cell | 4.71e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.67e-16 | 98 |
blood island | 1.67e-16 | 98 |
bone marrow | 5.35e-15 | 76 |
hemolymphoid system | 1.21e-14 | 108 |
bone element | 1.09e-13 | 82 |
immune system | 1.65e-13 | 93 |
skeletal element | 3.23e-12 | 90 |
skeletal system | 1.05e-10 | 100 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.