FFCP PHASE1:Mm9::chr18:33098447..33098458,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12326|HGNC=|MCL_coexpression_id=30|UniProt=Q8BGR3|association_with_transcript=-236bp_to_ENSMUST00000042868,NM_009793,uc008ejq.2_5end|description=CAGE_peak_8_at_Camk4_5end|id=chr18:33098447..33098458,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002614,1.59e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!8.00e-23!86;UBERON:0000153!6.11e-20!94;UBERON:0001049!9.65e-15!52;UBERON:0005068!9.65e-15!52;UBERON:0006241!9.65e-15!52;UBERON:0007135!9.65e-15!52;UBERON:0000073!4.45e-14!75;UBERON:0001016!4.45e-14!75;UBERON:0001017!1.10e-13!73;UBERON:0005743!1.10e-13!73;UBERON:0002616!1.65e-13!49;UBERON:0000955!4.17e-13!50;UBERON:0006238!4.17e-13!50;UBERON:0002346!5.14e-13!71;UBERON:0003075!5.14e-13!71;UBERON:0007284!5.14e-13!71;UBERON:0000064!7.49e-13!99;UBERON:0002020!1.05e-12!34;UBERON:0000063!1.52e-12!35;UBERON:0000033!3.32e-12!63;UBERON:0002370!5.43e-11!23;UBERON:0000974!5.43e-11!23;UBERON:0004807!5.43e-11!23;UBERON:0005058!5.43e-11!23;UBERON:0003351!5.43e-11!23;UBERON:0009113!5.43e-11!23;UBERON:0003295!5.43e-11!23;UBERON:0009722!5.43e-11!23;UBERON:0005562!5.43e-11!23;UBERON:0007690!5.43e-11!23;UBERON:0002791!7.44e-11!29;UBERON:0003528!7.44e-11!29;UBERON:0001893!7.44e-11!29;UBERON:0004121!1.35e-10!102;UBERON:0000924!1.35e-10!102;UBERON:0006601!1.35e-10!102;UBERON:0006562!2.21e-10!24;UBERON:0003408!2.21e-10!24;UBERON:0001557!2.21e-10!24;UBERON:0001042!2.21e-10!24;UBERON:0008814!2.21e-10!24;UBERON:0009145!2.21e-10!24;UBERON:0003076!2.52e-09!12;UBERON:0003057!2.52e-09!12;UBERON:0000956!4.01e-09!21;UBERON:0001869!4.01e-09!21;UBERON:0000203!4.01e-09!21;UBERON:0000072!7.81e-09!27;UBERON:0000477!1.44e-08!154;UBERON:0002021!2.09e-08!10;UBERON:0000411!2.09e-08!10;UBERON:0001950!2.09e-08!10;UBERON:0003056!2.31e-08!49;UBERON:0000483!3.44e-08!181;UBERON:0002780!3.77e-08!39;UBERON:0001890!3.77e-08!39;UBERON:0006240!3.77e-08!39;UBERON:0004177!5.51e-08!29;UBERON:0000119!5.62e-08!183;UBERON:0003080!7.70e-08!40;UBERON:0004733!5.35e-07!6;UBERON:0004732!5.35e-07!6;UBERON:0002028!5.35e-07!6;UBERON:0007277!5.35e-07!6;UBERON:0000475!5.86e-07!200;UBERON:0002619!6.37e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002037,6.55e-23,4;UBERON:0002680,6.55e-23,4;UBERON:0001895,6.55e-23,4;UBERON:0010092,6.55e-23,4;UBERON:0006215,6.55e-23,4;UBERON:0004733,1.13e-15,6;UBERON:0004732,1.13e-15,6;UBERON:0002028,1.13e-15,6;UBERON:0007277,1.13e-15,6;UBERON:0002038,1.59e-08,3;UBERON:0009663,1.59e-08,3;UBERON:0009661,1.59e-08,3;UBERON:0000125,1.59e-08,3;UBERON:0002308,1.59e-08,3;UBERON:0002616,2.15e-08,46;UBERON:0003076,2.25e-08,12;UBERON:0003057,2.25e-08,12;UBERON:0000955,3.12e-08,47;UBERON:0006238,3.12e-08,47;UBERON:0001049,1.63e-07,52;UBERON:0005068,1.63e-07,52;UBERON:0006241,1.63e-07,52;UBERON:0007135,1.63e-07,52;UBERON:0000073,2.91e-07,54|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0.703943610758334,0,0,0,0.342401459862411,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0.210324961351382,0,0,0.244981598429908,0,0,0,0.255374676170375,0.46081959976873,0,0.182975287204819,0,1.3959149950069,0,0.30559649555362,0.589257170947335,0.142371680799103,0.186399445825301,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.8101630386235,22.8296910426666,0,0,0,0,0,0,0.125654352112864,0.347648640384553,0.511430914660661,0.41557608911912,0,0,0,0,0,0,0,0,0,0,0.12811372028485,0.281105173679186,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0.315508219416257,0,0,0,0.222798674082394,0,0,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0.138199973804424,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0.316011120628178,0,0.308132871494482,0.129920822977795,0.895133478337407,0.198681354781265,0.480781798079875,0,0.605798699688886,0.15241361331,0.604957110821043,0.194915761479505,0.481059208201647,0.584384510907845,0,0,0,0,0,0,0,0,0,0.564751842617067,1.38097570952153,0.572895513439397,0.515559547031063,0.685082519770642,0,0.675022500231806,0.900642406448441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188218760830661,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191288332068843,0,0|short_description=p8@Camk4}} | ||
|EntrezGene=12326 | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|UniProt=Q8BGR3 | |||
|association_with_transcript=-236bp_to_ENSMUST00000042868,NM_009793,uc008ejq.2_5end | |||
|description=CAGE_peak_8_at_Camk4_5end | |||
|id=chr18:33098447..33098458,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002614,1.59e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!8.00e-23!86;UBERON:0000153!6.11e-20!94;UBERON:0001049!9.65e-15!52;UBERON:0005068!9.65e-15!52;UBERON:0006241!9.65e-15!52;UBERON:0007135!9.65e-15!52;UBERON:0000073!4.45e-14!75;UBERON:0001016!4.45e-14!75;UBERON:0001017!1.10e-13!73;UBERON:0005743!1.10e-13!73;UBERON:0002616!1.65e-13!49;UBERON:0000955!4.17e-13!50;UBERON:0006238!4.17e-13!50;UBERON:0002346!5.14e-13!71;UBERON:0003075!5.14e-13!71;UBERON:0007284!5.14e-13!71;UBERON:0000064!7.49e-13!99;UBERON:0002020!1.05e-12!34;UBERON:0000063!1.52e-12!35;UBERON:0000033!3.32e-12!63;UBERON:0002370!5.43e-11!23;UBERON:0000974!5.43e-11!23;UBERON:0004807!5.43e-11!23;UBERON:0005058!5.43e-11!23;UBERON:0003351!5.43e-11!23;UBERON:0009113!5.43e-11!23;UBERON:0003295!5.43e-11!23;UBERON:0009722!5.43e-11!23;UBERON:0005562!5.43e-11!23;UBERON:0007690!5.43e-11!23;UBERON:0002791!7.44e-11!29;UBERON:0003528!7.44e-11!29;UBERON:0001893!7.44e-11!29;UBERON:0004121!1.35e-10!102;UBERON:0000924!1.35e-10!102;UBERON:0006601!1.35e-10!102;UBERON:0006562!2.21e-10!24;UBERON:0003408!2.21e-10!24;UBERON:0001557!2.21e-10!24;UBERON:0001042!2.21e-10!24;UBERON:0008814!2.21e-10!24;UBERON:0009145!2.21e-10!24;UBERON:0003076!2.52e-09!12;UBERON:0003057!2.52e-09!12;UBERON:0000956!4.01e-09!21;UBERON:0001869!4.01e-09!21;UBERON:0000203!4.01e-09!21;UBERON:0000072!7.81e-09!27;UBERON:0000477!1.44e-08!154;UBERON:0002021!2.09e-08!10;UBERON:0000411!2.09e-08!10;UBERON:0001950!2.09e-08!10;UBERON:0003056!2.31e-08!49;UBERON:0000483!3.44e-08!181;UBERON:0002780!3.77e-08!39;UBERON:0001890!3.77e-08!39;UBERON:0006240!3.77e-08!39;UBERON:0004177!5.51e-08!29;UBERON:0000119!5.62e-08!183;UBERON:0003080!7.70e-08!40;UBERON:0004733!5.35e-07!6;UBERON:0004732!5.35e-07!6;UBERON:0002028!5.35e-07!6;UBERON:0007277!5.35e-07!6;UBERON:0000475!5.86e-07!200;UBERON:0002619!6.37e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,6.55e-23,4;UBERON:0002680,6.55e-23,4;UBERON:0001895,6.55e-23,4;UBERON:0010092,6.55e-23,4;UBERON:0006215,6.55e-23,4;UBERON:0004733,1.13e-15,6;UBERON:0004732,1.13e-15,6;UBERON:0002028,1.13e-15,6;UBERON:0007277,1.13e-15,6;UBERON:0002038,1.59e-08,3;UBERON:0009663,1.59e-08,3;UBERON:0009661,1.59e-08,3;UBERON:0000125,1.59e-08,3;UBERON:0002308,1.59e-08,3;UBERON:0002616,2.15e-08,46;UBERON:0003076,2.25e-08,12;UBERON:0003057,2.25e-08,12;UBERON:0000955,3.12e-08,47;UBERON:0006238,3.12e-08,47;UBERON:0001049,1.63e-07,52;UBERON:0005068,1.63e-07,52;UBERON:0006241,1.63e-07,52;UBERON:0007135,1.63e-07,52;UBERON:0000073,2.91e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0.703943610758334,0,0,0,0.342401459862411,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0.210324961351382,0,0,0.244981598429908,0,0,0,0.255374676170375,0.46081959976873,0,0.182975287204819,0,1.3959149950069,0,0.30559649555362,0.589257170947335,0.142371680799103,0.186399445825301,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.8101630386235,22.8296910426666,0,0,0,0,0,0,0.125654352112864,0.347648640384553,0.511430914660661,0.41557608911912,0,0,0,0,0,0,0,0,0,0,0.12811372028485,0.281105173679186,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0.315508219416257,0,0,0,0.222798674082394,0,0,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0.138199973804424,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0.316011120628178,0,0.308132871494482,0.129920822977795,0.895133478337407,0.198681354781265,0.480781798079875,0,0.605798699688886,0.15241361331,0.604957110821043,0.194915761479505,0.481059208201647,0.584384510907845,0,0,0,0,0,0,0,0,0,0.564751842617067,1.38097570952153,0.572895513439397,0.515559547031063,0.685082519770642,0,0.675022500231806,0.900642406448441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188218760830661,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191288332068843,0,0 | |||
|short_description=p8@Camk4 | |||
}} |
Revision as of 15:55, 13 September 2013
Short description: | p8@Camk4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Camk4_5end |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | -236bp_to_ENSMUST00000042868, NM_009793, uc008ejq.2_5end |
EntrezGene: | Camk4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the substantia nigra | 1.59e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 6.55e-23 | 4 |
regional part of metencephalon | 6.55e-23 | 4 |
metencephalon | 6.55e-23 | 4 |
future metencephalon | 6.55e-23 | 4 |
rhombic lip | 6.55e-23 | 4 |
segmental subdivision of hindbrain | 1.13e-15 | 6 |
segmental subdivision of nervous system | 1.13e-15 | 6 |
hindbrain | 1.13e-15 | 6 |
presumptive hindbrain | 1.13e-15 | 6 |
substantia nigra | 1.59e-08 | 3 |
telencephalic nucleus | 1.59e-08 | 3 |
midbrain nucleus | 1.59e-08 | 3 |
neural nucleus | 1.59e-08 | 3 |
nucleus of brain | 1.59e-08 | 3 |
regional part of brain | 2.15e-08 | 46 |
posterior neural tube | 2.25e-08 | 12 |
chordal neural plate | 2.25e-08 | 12 |
brain | 3.12e-08 | 47 |
future brain | 3.12e-08 | 47 |
neural tube | 1.63e-07 | 52 |
neural rod | 1.63e-07 | 52 |
future spinal cord | 1.63e-07 | 52 |
neural keel | 1.63e-07 | 52 |
regional part of nervous system | 2.91e-07 | 54 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.