FFCP PHASE1:Hg19::chr5:52084087..52084115,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3672|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6134|TSSclassifier=S|UniProt=P56199|association_with_transcript=-20bp_to_NM_181501_5end|coexpression_cluster_id=C1277|description=CAGE_peak_5_at_ITGA1_5end|id=chr5:52084087..52084115,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000136;1.45e-11;13|ontology_enrichment_celltype_v019_2=CL:0000136,1.15e-09,15|ontology_enrichment_development_v019=UBERON:0004872;1.01e-07;7|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000481!2.96e-10!347;UBERON:0007023!2.05e-09!115;UBERON:0000468!4.39e-09!659;UBERON:0000477!6.00e-09!286;UBERON:0000475!4.52e-08!365;UBERON:0002100!5.62e-08!216;UBERON:0000490!5.88e-08!138;UBERON:0009856!8.84e-08!26;UBERON:0003914!9.12e-08!118;UBERON:0003104!1.45e-07!238;UBERON:0009142!1.45e-07!238;UBERON:0007499!2.61e-07!25;UBERON:0002107!4.13e-07!19;UBERON:0006925!4.13e-07!19;UBERON:0008836!4.13e-07!19;UBERON:0002368!5.88e-07!35;UBERON:0009854!5.92e-07!23;UBERON:0005256!9.48e-07!143|ontology_enrichment_uberon_v019=UBERON:0002368;1.04e-08;33!UBERON:0002107;1.45e-08;19!UBERON:0006925;1.45e-08;19!UBERON:0003688;6.13e-07;6!UBERON:0002358;6.13e-07;6!UBERON:0003684;6.13e-07;6!UBERON:0001178;6.13e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.80e-09,199;UBERON:0002368,5.91e-09,35;UBERON:0002107,1.20e-08,19;UBERON:0006925,1.20e-08,19;UBERON:0008836,1.20e-08,19;UBERON:0003104,5.74e-08,160;UBERON:0009142,5.74e-08,160;UBERON:0009856,6.31e-08,26;UBERON:0009854,7.09e-08,23;UBERON:0003914,1.05e-07,117;UBERON:0005256,1.77e-07,122;UBERON:0007499,3.71e-07,25;UBERON:0000490,3.84e-07,148;UBERON:0008835,4.46e-07,22;UBERON:0003894,4.46e-07,22;UBERON:0001048,5.19e-07,160;UBERON:0009569,5.36e-07,112;UBERON:0003688,9.49e-07,6;UBERON:0002358,9.49e-07,6;UBERON:0003684,9.49e-07,6;UBERON:0001178,9.49e-07,6|phase1_expression=2.90685406832891,2.35510576280081,2.25527046553554,11.0080628188443,6.25745532198203,0,0,1.26343974685366,0.783556884599516,0.491467873003018,0,0,0,0,0,0,0,0.730310090387373,0.487932798790507,0.123121058076788,0,0,0.85870796139317,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0.56738522469114,0.622822248995575,0,0,1.08594422352558,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0.829050053357545,0.579606171470105,0,0,1.04535523804977,0.226618685395132,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,0,2.68280343881454,2.17366355134002,0.722878304769133,1.00267582127178,0.144846518960824,0,0.486634870302636,0.189069634328136,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,1.03366703667732,0.71153252537342,1.00416183829401,1.20848795132744,4.56163263431108,0.732186172644509,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0.993943903390637,0.379891534993739,0.264818361626438,0,0,0,1.06748995729705,1.2333377420858,0.311211035399766,0.67355336034844,0.653847612453835,0.454072282934794,0,0,0,0,0,0,0,0,0.408308342509787,0.122834317311768,0.309977343527296,0,1.23633464639278,0,0,0,0.125118519871964,0.277064115484183,0,0.612975591598039,1.80285670687916,0.567160915800105,2.51145489964407,4.05759038755278,0.423863802319124,0.300091096084402,0.412210116953756,2.06112432036503,2.04728541964749,1.18143432568886,0.487185025805993,1.00973509697646,1.38074847963449,0.161646056818812,3.55009592516614,1.71278566986988,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,3.12899064659632,3.21620469096443,0,0,0,0.946454400318751,0.674338760312407,0,1.32352767278873,0.217879444092406,1.18635309555548,0.674156540800822,0.392442930250692,0,1.4763109092493,0,0.4115740113314,0,12.6755034821831,18.6737171168749,11.8157981336281,0,0,1.02940686179115,0,0,0,0,0,0,0,0.231860809950154,1.52631302506568,2.16549671641611,0.462985512576611,2.66355813128438,0,0,0,0,0,0,0,0,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0.43596006883328,0.22001485746285,4.13669490424889,0,0.845302752556,3.98907174877306,2.08014873822732,0,0,0.266422179016099,5.57614175266775,0.542621605391443,0,0.977208552881205,3.909311436168,2.37585561880029,0.602878754119172,4.35766729300147,0.299918973546171,0,0,0,0.718874566474748,2.29723871668228,0,0.289562613335158,0,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0.623912584592421,0.356857977594324,0.630809660135739,0.234282829985426,0,0,1.03473071292505,0,0,0.260650843404249,0.391602314925481,0,0,0,0,0,0,0,3.96972492510043,3.06923946576125,1.40330047216537,1.02511319404561,5.62877973973374,0.804269605718038,1.48418066444991,0.154209693802656,0,0.246381468041427,0,0.116210378459959,0,0,0,0.574072240823034,0,0.393373244878272,0,0.15403067420883,0,0,0.527758144464379,0,0.510281115829547,0.215915916102139,1.54227252690289,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p5@ITGA1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3672 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6134 | |||
|TSSclassifier=S | |||
|UniProt=P56199 | |||
|association_with_transcript=-20bp_to_NM_181501_5end | |||
|coexpression_cluster_id=C1277 | |||
|description=CAGE_peak_5_at_ITGA1_5end | |||
|id=chr5:52084087..52084115,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.45e-11;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.15e-09,15 | |||
|ontology_enrichment_development_v019=UBERON:0004872;1.01e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!2.96e-10!347;UBERON:0007023!2.05e-09!115;UBERON:0000468!4.39e-09!659;UBERON:0000477!6.00e-09!286;UBERON:0000475!4.52e-08!365;UBERON:0002100!5.62e-08!216;UBERON:0000490!5.88e-08!138;UBERON:0009856!8.84e-08!26;UBERON:0003914!9.12e-08!118;UBERON:0003104!1.45e-07!238;UBERON:0009142!1.45e-07!238;UBERON:0007499!2.61e-07!25;UBERON:0002107!4.13e-07!19;UBERON:0006925!4.13e-07!19;UBERON:0008836!4.13e-07!19;UBERON:0002368!5.88e-07!35;UBERON:0009854!5.92e-07!23;UBERON:0005256!9.48e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0002368;1.04e-08;33!UBERON:0002107;1.45e-08;19!UBERON:0006925;1.45e-08;19!UBERON:0003688;6.13e-07;6!UBERON:0002358;6.13e-07;6!UBERON:0003684;6.13e-07;6!UBERON:0001178;6.13e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.80e-09,199;UBERON:0002368,5.91e-09,35;UBERON:0002107,1.20e-08,19;UBERON:0006925,1.20e-08,19;UBERON:0008836,1.20e-08,19;UBERON:0003104,5.74e-08,160;UBERON:0009142,5.74e-08,160;UBERON:0009856,6.31e-08,26;UBERON:0009854,7.09e-08,23;UBERON:0003914,1.05e-07,117;UBERON:0005256,1.77e-07,122;UBERON:0007499,3.71e-07,25;UBERON:0000490,3.84e-07,148;UBERON:0008835,4.46e-07,22;UBERON:0003894,4.46e-07,22;UBERON:0001048,5.19e-07,160;UBERON:0009569,5.36e-07,112;UBERON:0003688,9.49e-07,6;UBERON:0002358,9.49e-07,6;UBERON:0003684,9.49e-07,6;UBERON:0001178,9.49e-07,6 | |||
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| |||
|short_description=p5@ITGA1 | |||
}} |
Revision as of 15:49, 13 September 2013
Short description: | p5@ITGA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_ITGA1_5end |
Coexpression cluster: | C1277_Hepatocyte_mature_mesenchymal_smooth_bladder_normal_cholangiocellular |
Association with transcript: | -20bp_to_NM_181501_5end |
EntrezGene: | ITGA1 |
HGNC: | 6134 |
UniProt: | P56199 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.15e-09 | 15 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.80e-09 | 199 |
endocrine gland | 5.91e-09 | 35 |
liver | 1.20e-08 | 19 |
digestive gland | 1.20e-08 | 19 |
liver bud | 1.20e-08 | 19 |
mesenchyme | 5.74e-08 | 160 |
entire embryonic mesenchyme | 5.74e-08 | 160 |
sac | 6.31e-08 | 26 |
digestive tract diverticulum | 7.09e-08 | 23 |
epithelial tube | 1.05e-07 | 117 |
trunk mesenchyme | 1.77e-07 | 122 |
epithelial sac | 3.71e-07 | 25 |
unilaminar epithelium | 3.84e-07 | 148 |
hepatic diverticulum | 4.46e-07 | 22 |
liver primordium | 4.46e-07 | 22 |
primordium | 5.19e-07 | 160 |
subdivision of trunk | 5.36e-07 | 112 |
omentum | 9.49e-07 | 6 |
peritoneum | 9.49e-07 | 6 |
abdominal cavity | 9.49e-07 | 6 |
visceral peritoneum | 9.49e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.