FFCP PHASE1:Hg19::chr5:32174338..32174367,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64083|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15452|TSSclassifier=S|UniProt=D6REM1|association_with_transcript=40bp_to_ENST00000503610_5end|description=CAGE_peak_2_at_GOLPH3_5end|id=chr5:32174338..32174367,-|ontology_enrichment_celltype=CL:0000557!1.13e-18!71;CL:0002194!1.34e-17!63;CL:0000576!1.34e-17!63;CL:0000040!1.34e-17!63;CL:0000559!1.34e-17!63;CL:0000860!1.87e-17!45;CL:0000766!2.18e-17!76;CL:0002009!2.62e-17!65;CL:0002057!9.57e-17!42;CL:0000839!1.91e-16!70;CL:0000048!7.97e-14!430;CL:0000034!1.71e-13!444;CL:0000134!8.34e-13!358;CL:0000723!1.11e-12!436;CL:0000763!5.92e-12!112;CL:0000049!5.92e-12!112;CL:0002320!1.07e-11!365;CL:0000012!2.89e-10!682;CL:0000548!2.38e-09!679;CL:0000004!2.38e-09!679;CL:0000255!2.38e-09!679;CL:0000063!7.11e-09!578;CL:0000219!7.52e-08!390;CL:0002031!7.59e-07!124|ontology_enrichment_celltype_v019=CL:0000860;8.89e-15;33!CL:0002057;8.89e-15;33!CL:0000473;3.54e-12;39!CL:0000234;3.54e-12;39!CL:0000576;1.17e-10;48!CL:0000766;1.87e-07;69|ontology_enrichment_celltype_v019_2=CL:0000557,1.30e-17,67;CL:0000860,8.54e-17,42;CL:0002057,8.54e-17,42;CL:0002194,1.51e-16,59;CL:0000576,1.51e-16,59;CL:0000040,1.51e-16,59;CL:0000559,1.51e-16,59;CL:0000766,2.03e-16,72;CL:0002009,2.95e-16,61;CL:0000473,5.15e-16,48;CL:0000234,5.15e-16,48;CL:0000839,1.56e-15,66;CL:0000048,1.17e-13,427;CL:0000034,2.79e-13,441;CL:0000134,1.75e-12,354;CL:0000723,1.78e-12,433;CL:0002320,2.26e-11,361;CL:0000763,3.24e-11,108;CL:0000049,3.24e-11,108;CL:0000219,1.39e-07,386|ontology_enrichment_development_v019=CL:0002057;1.17e-12;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.93e-20!80;UBERON:0001474!1.01e-19!86;UBERON:0002405!1.52e-17!115;UBERON:0002390!2.78e-16!102;UBERON:0003061!2.78e-16!102;UBERON:0004765!1.88e-15!101;UBERON:0001434!1.88e-15!101;UBERON:0002193!1.88e-14!112;UBERON:0000926!3.13e-12!448;UBERON:0004120!3.13e-12!448;UBERON:0006603!3.13e-12!448;UBERON:0002204!3.96e-12!167;UBERON:0002384!3.61e-11!375;UBERON:0003081!3.64e-07!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.28e-19,76;UBERON:0001474,1.18e-18,82;UBERON:0002390,2.99e-15,98;UBERON:0003061,2.99e-15,98;UBERON:0004765,3.36e-15,90;UBERON:0002405,2.48e-14,93;UBERON:0001434,1.54e-13,100;UBERON:0002193,2.18e-13,108;UBERON:0002384,7.50e-11,371;UBERON:0002204,8.13e-11,167;UBERON:0000926,1.26e-08,315;UBERON:0004120,1.26e-08,315;UBERON:0006603,1.26e-08,315;UBERON:0003081,5.92e-08,203|phase1_expression=7.44881355009282,6.85121676451146,7.18867460889453,8.00586386825043,3.12872766099101,5.23403114460221,7.59899634504932,5.68547886084148,1.82829939739887,3.68600904752263,2.09340350391728,1.74753097704138,2.90143676051299,2.35156070624089,1.32558950291166,0.672325146451775,1.20538905604795,3.65155045193687,1.95173119516203,1.23121058076788,1.42800483870977,0.626909442956176,1.14494394852423,1.09499540058307,1.88313959392204,1.29902789771517,1.80621296789881,1.65292640758726,1.96682138424452,3.83829398097213,3.2511385896376,0.919421224478927,0,1.47901604066715,1.16200800870452,0.995184627411951,8.22081230137572,2.21598163412751,3.40925560699241,3.47217393145363,2.46307021663917,1.6194683300949,3.60605794687861,3.63495596948912,7.17964293008738,6.54976965207104,6.97287110717054,5.75635043230556,7.12324653058738,7.76769459269806,4.86705342405291,8.27687804610048,8.27389633767885,5.16387746867061,5.41705946377367,6.21199720490596,9.5517152520246,5.39336362668203,9.79468455586888,11.2325159476633,12.1474053901818,11.2149442063483,5.98390972864896,6.39337125799041,7.83564944297177,10.7803192691317,10.5879782329248,9.54744927975624,4.69334626578181,6.95004303056373,10.2917915447673,9.57521853567668,9.17740923578565,4.01385043992689,3.18906449947565,2.93522103711726,3.48218756554135,2.85336096398862,2.57160938715328,5.41524213108372,4.17725022118089,5.11459630540975,0,1.63841583378639,0,1.28019066769952,0,1.72425731986345,2.64417949113945,0.954053754535364,1.70763890732835,2.93618594685469,1.91136614062614,14.5388461436928,15.694239763483,3.16060901730092,2.55722701147983,2.35806457649499,5.14003747498773,0.83593247695339,2.28145586643513,1.4203434172042,0,3.00808233589969,1.47302953737419,3.76607620792156,2.16643091012012,1.5370958367081,2.47112760363769,1.47994114143309,1.93445012450094,2.60822777161547,1.77943875794473,2.1403266247177,0,2.15287751125376,3.44898444241729,2.06176467289578,1.01207876807801,1.59282707162048,1.30216690771284,0.950452044448374,0.903450714466637,0.895906278080929,1.24930726552346,1.18388626022008,0,4.43534835094411,6.15112450302067,3.18613688542158,4.87613732627923,5.36560687762909,1.91793842765295,2.1686349143074,4.51204119572301,2.462390822334,7.15757352345989,6.8128881842369,1.32348744029695,1.99556457716308,1.31752178539689,2.22664428346111,2.5500670180478,1.11235332835329,11.0346113842592,9.0547463395619,6.91381394698099,2.62339686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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64083 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15452 | |||
|TSSclassifier=S | |||
|UniProt=D6REM1 | |||
|association_with_transcript=40bp_to_ENST00000503610_5end | |||
|description=CAGE_peak_2_at_GOLPH3_5end | |||
|id=chr5:32174338..32174367,- | |||
|ontology_enrichment_celltype=CL:0000557!1.13e-18!71;CL:0002194!1.34e-17!63;CL:0000576!1.34e-17!63;CL:0000040!1.34e-17!63;CL:0000559!1.34e-17!63;CL:0000860!1.87e-17!45;CL:0000766!2.18e-17!76;CL:0002009!2.62e-17!65;CL:0002057!9.57e-17!42;CL:0000839!1.91e-16!70;CL:0000048!7.97e-14!430;CL:0000034!1.71e-13!444;CL:0000134!8.34e-13!358;CL:0000723!1.11e-12!436;CL:0000763!5.92e-12!112;CL:0000049!5.92e-12!112;CL:0002320!1.07e-11!365;CL:0000012!2.89e-10!682;CL:0000548!2.38e-09!679;CL:0000004!2.38e-09!679;CL:0000255!2.38e-09!679;CL:0000063!7.11e-09!578;CL:0000219!7.52e-08!390;CL:0002031!7.59e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.89e-15;33!CL:0002057;8.89e-15;33!CL:0000473;3.54e-12;39!CL:0000234;3.54e-12;39!CL:0000576;1.17e-10;48!CL:0000766;1.87e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.30e-17,67;CL:0000860,8.54e-17,42;CL:0002057,8.54e-17,42;CL:0002194,1.51e-16,59;CL:0000576,1.51e-16,59;CL:0000040,1.51e-16,59;CL:0000559,1.51e-16,59;CL:0000766,2.03e-16,72;CL:0002009,2.95e-16,61;CL:0000473,5.15e-16,48;CL:0000234,5.15e-16,48;CL:0000839,1.56e-15,66;CL:0000048,1.17e-13,427;CL:0000034,2.79e-13,441;CL:0000134,1.75e-12,354;CL:0000723,1.78e-12,433;CL:0002320,2.26e-11,361;CL:0000763,3.24e-11,108;CL:0000049,3.24e-11,108;CL:0000219,1.39e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.17e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.93e-20!80;UBERON:0001474!1.01e-19!86;UBERON:0002405!1.52e-17!115;UBERON:0002390!2.78e-16!102;UBERON:0003061!2.78e-16!102;UBERON:0004765!1.88e-15!101;UBERON:0001434!1.88e-15!101;UBERON:0002193!1.88e-14!112;UBERON:0000926!3.13e-12!448;UBERON:0004120!3.13e-12!448;UBERON:0006603!3.13e-12!448;UBERON:0002204!3.96e-12!167;UBERON:0002384!3.61e-11!375;UBERON:0003081!3.64e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.28e-19,76;UBERON:0001474,1.18e-18,82;UBERON:0002390,2.99e-15,98;UBERON:0003061,2.99e-15,98;UBERON:0004765,3.36e-15,90;UBERON:0002405,2.48e-14,93;UBERON:0001434,1.54e-13,100;UBERON:0002193,2.18e-13,108;UBERON:0002384,7.50e-11,371;UBERON:0002204,8.13e-11,167;UBERON:0000926,1.26e-08,315;UBERON:0004120,1.26e-08,315;UBERON:0006603,1.26e-08,315;UBERON:0003081,5.92e-08,203 | |||
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| |||
|short_description=p2@GOLPH3 | |||
}} |
Revision as of 15:25, 13 September 2013
Short description: | p2@GOLPH3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_GOLPH3_5end |
Coexpression cluster: | NA |
Association with transcript: | 40bp_to_ENST00000503610_5end |
EntrezGene: | GOLPH3 |
HGNC: | 15452 |
UniProt: | D6REM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 1.30e-17 | 67 |
classical monocyte | 8.54e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.54e-17 | 42 |
monopoietic cell | 1.51e-16 | 59 |
monocyte | 1.51e-16 | 59 |
monoblast | 1.51e-16 | 59 |
promonocyte | 1.51e-16 | 59 |
myeloid leukocyte | 2.03e-16 | 72 |
macrophage dendritic cell progenitor | 2.95e-16 | 61 |
defensive cell | 5.15e-16 | 48 |
phagocyte | 5.15e-16 | 48 |
myeloid lineage restricted progenitor cell | 1.56e-15 | 66 |
multi fate stem cell | 1.17e-13 | 427 |
stem cell | 2.79e-13 | 441 |
mesenchymal cell | 1.75e-12 | 354 |
somatic stem cell | 1.78e-12 | 433 |
connective tissue cell | 2.26e-11 | 361 |
myeloid cell | 3.24e-11 | 108 |
common myeloid progenitor | 3.24e-11 | 108 |
motile cell | 1.39e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.28e-19 | 76 |
bone element | 1.18e-18 | 82 |
hematopoietic system | 2.99e-15 | 98 |
blood island | 2.99e-15 | 98 |
skeletal element | 3.36e-15 | 90 |
immune system | 2.48e-14 | 93 |
skeletal system | 1.54e-13 | 100 |
hemolymphoid system | 2.18e-13 | 108 |
connective tissue | 7.50e-11 | 371 |
musculoskeletal system | 8.13e-11 | 167 |
mesoderm | 1.26e-08 | 315 |
mesoderm-derived structure | 1.26e-08 | 315 |
presumptive mesoderm | 1.26e-08 | 315 |
lateral plate mesoderm | 5.92e-08 | 203 |
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