FFCP PHASE1:Mm9::chr17:56594384..56594396,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=670|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:56594384..56594396,-|id=chr17:56594384..56594396,-|ontology_enrichment_celltype=CL:0000221!1.81e-17!44;CL:0000133!1.81e-17!44;CL:0002319!2.40e-17!43;CL:0000055!2.90e-16!50;CL:0000540!1.38e-14!33;CL:0000047!1.38e-14!33;CL:0000031!1.38e-14!33;CL:0000404!1.38e-14!33;CL:0000393!3.67e-14!39;CL:0000211!3.67e-14!39;CL:0000117!6.70e-14!23;CL:0000337!6.70e-14!23;CL:0002321!3.45e-08!70;CL:0000220!3.45e-08!70|ontology_enrichment_celltype_v019_2=CL:0000117,2.70e-36,23;CL:0000337,2.70e-36,23;CL:0002319,1.00e-32,43;CL:0000221,7.26e-32,44;CL:0000133,7.26e-32,44;CL:0000540,8.28e-27,33;CL:0000047,8.28e-27,33;CL:0000031,8.28e-27,33;CL:0000404,8.28e-27,33;CL:0000393,4.99e-22,39;CL:0000211,4.99e-22,39;CL:0002321,4.15e-18,70;CL:0002609,2.21e-17,6;CL:0000723,3.23e-10,91;CL:0000048,3.23e-10,91;CL:0000120,2.29e-09,3;CL:0000034,2.74e-09,97;CL:0002608,3.16e-09,3;CL:0002613,4.62e-09,3;CL:0002610,1.69e-08,3;CL:0002453,2.01e-08,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!7.93e-32!73;UBERON:0005743!7.93e-32!73;UBERON:0000073!4.35e-31!75;UBERON:0001016!4.35e-31!75;UBERON:0004121!4.56e-27!102;UBERON:0000924!4.56e-27!102;UBERON:0006601!4.56e-27!102;UBERON:0002346!4.75e-25!71;UBERON:0003075!4.75e-25!71;UBERON:0007284!4.75e-25!71;UBERON:0001049!2.91e-24!52;UBERON:0005068!2.91e-24!52;UBERON:0006241!2.91e-24!52;UBERON:0007135!2.91e-24!52;UBERON:0000955!2.70e-23!50;UBERON:0006238!2.70e-23!50;UBERON:0002616!4.05e-23!49;UBERON:0000033!1.07e-21!63;UBERON:0003056!1.53e-19!49;UBERON:0003080!7.59e-19!40;UBERON:0002780!1.60e-18!39;UBERON:0001890!1.60e-18!39;UBERON:0006240!1.60e-18!39;UBERON:0002020!1.64e-17!34;UBERON:0002791!5.89e-15!29;UBERON:0003528!5.89e-15!29;UBERON:0001893!5.89e-15!29;UBERON:0007811!9.71e-13!86;UBERON:0000956!1.23e-12!21;UBERON:0001869!1.23e-12!21;UBERON:0000203!1.23e-12!21;UBERON:0000153!1.74e-12!94;UBERON:0002619!1.01e-10!17;UBERON:0000025!2.43e-07!114;UBERON:0002021!3.33e-07!10;UBERON:0000411!3.33e-07!10;UBERON:0001950!3.33e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.89e-31,73;UBERON:0001016,2.82e-30,75;UBERON:0002020,4.31e-26,34;UBERON:0000073,5.99e-25,54;UBERON:0004121,1.15e-22,95;UBERON:0000924,1.15e-22,95;UBERON:0006601,1.15e-22,95;UBERON:0003528,8.88e-22,29;UBERON:0002791,8.88e-22,29;UBERON:0001893,8.88e-22,29;UBERON:0000956,2.21e-20,21;UBERON:0001869,2.21e-20,21;UBERON:0000203,2.21e-20,21;UBERON:0001049,1.82e-19,52;UBERON:0005068,1.82e-19,52;UBERON:0006241,1.82e-19,52;UBERON:0007135,1.82e-19,52;UBERON:0002780,2.43e-17,39;UBERON:0001890,2.43e-17,39;UBERON:0006240,2.43e-17,39;UBERON:0003080,8.20e-17,40;UBERON:0002616,4.67e-16,46;UBERON:0000955,1.25e-15,47;UBERON:0006238,1.25e-15,47;UBERON:0002346,6.08e-15,64;UBERON:0003075,6.08e-15,64;UBERON:0007284,6.08e-15,64;UBERON:0002619,1.08e-14,17;UBERON:0003056,5.00e-13,49;UBERON:0010371,1.58e-12,73;UBERON:0010314,4.77e-10,92;UBERON:0002021,1.83e-09,10;UBERON:0000411,1.83e-09,10;UBERON:0001950,1.83e-09,10;UBERON:0004684,1.69e-08,3;UBERON:0002275,1.69e-08,3;UBERON:0011216,5.49e-08,194|phase1_expression=0,0,0,0,0,0,0.233612640595526,0.129123323441576,0,0,0.171217968225505,0,0,0,0,0,0,0,0,0,0.0850432901510698,0.198581902401771,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.101376931219515,0.183546752161682,0.782391344348039,2.18025156380447,0.878744730937887,2.13872888981712,1.67983705950435,0,0.167782606057736,0,0,0,0.286533439938757,0.515672092277442,2.42779753031517,3.1739458756322,1.90149421051854,0,1.77858959222228,0.449949858640699,0,0,1.19840044207362,3.07374644257244,2.48855069540346,3.78016627328734,2.52389953621658,0.285650984403804,2.65042249141936,1.10241719293459,3.54628242767475,2.75765635983006,2.20231761998777,1.53224805702225,1.22885226604995,1.97829431595291,2.10421580285542,2.6045668527838,0.837548997004143,0,0.763991238884051,2.06240009831567,1.28134512719193,0.559198337475902,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0.511290967734173,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,0.253359865475099,0,0,0,0.29688427812965,0,1.21786191324856,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0.323533699894818,0,0,0,0.585561594023094,0.41889341362691,0.255457055208591,0.599075622529601,0,0.127070227073065,0.449371918214468,0.457500602818626,0.251308704225729,0.173824320192276,0.511430914660661,0.83115217823824,0.486723789203273,0.509196819251581,0.248813941220186,0.252722758433675,0.210441855886474,0.260240885925407,0.689706313300419,0.180062129805349,0.150704817835715,0.476255494059295,0.640568601424249,0.655912071918102,0,0.215567992932842,0.189106080167819,0.527853372491847,0,0,0.348252166522167,0.411564272815887,0,0,0.257347907114715,0,0.414251545071004,0,0,0,0,0.154267112887378,0.465067889500816,0,0.116765342367169,0.16455984991348,0,0,0,0.219550115291051,0.134206418760372,0.210289948564127,0.617427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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=670 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:56594384..56594396,- | |||
|id=chr17:56594384..56594396,- | |||
|ontology_enrichment_celltype=CL:0000221!1.81e-17!44;CL:0000133!1.81e-17!44;CL:0002319!2.40e-17!43;CL:0000055!2.90e-16!50;CL:0000540!1.38e-14!33;CL:0000047!1.38e-14!33;CL:0000031!1.38e-14!33;CL:0000404!1.38e-14!33;CL:0000393!3.67e-14!39;CL:0000211!3.67e-14!39;CL:0000117!6.70e-14!23;CL:0000337!6.70e-14!23;CL:0002321!3.45e-08!70;CL:0000220!3.45e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.70e-36,23;CL:0000337,2.70e-36,23;CL:0002319,1.00e-32,43;CL:0000221,7.26e-32,44;CL:0000133,7.26e-32,44;CL:0000540,8.28e-27,33;CL:0000047,8.28e-27,33;CL:0000031,8.28e-27,33;CL:0000404,8.28e-27,33;CL:0000393,4.99e-22,39;CL:0000211,4.99e-22,39;CL:0002321,4.15e-18,70;CL:0002609,2.21e-17,6;CL:0000723,3.23e-10,91;CL:0000048,3.23e-10,91;CL:0000120,2.29e-09,3;CL:0000034,2.74e-09,97;CL:0002608,3.16e-09,3;CL:0002613,4.62e-09,3;CL:0002610,1.69e-08,3;CL:0002453,2.01e-08,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.93e-32!73;UBERON:0005743!7.93e-32!73;UBERON:0000073!4.35e-31!75;UBERON:0001016!4.35e-31!75;UBERON:0004121!4.56e-27!102;UBERON:0000924!4.56e-27!102;UBERON:0006601!4.56e-27!102;UBERON:0002346!4.75e-25!71;UBERON:0003075!4.75e-25!71;UBERON:0007284!4.75e-25!71;UBERON:0001049!2.91e-24!52;UBERON:0005068!2.91e-24!52;UBERON:0006241!2.91e-24!52;UBERON:0007135!2.91e-24!52;UBERON:0000955!2.70e-23!50;UBERON:0006238!2.70e-23!50;UBERON:0002616!4.05e-23!49;UBERON:0000033!1.07e-21!63;UBERON:0003056!1.53e-19!49;UBERON:0003080!7.59e-19!40;UBERON:0002780!1.60e-18!39;UBERON:0001890!1.60e-18!39;UBERON:0006240!1.60e-18!39;UBERON:0002020!1.64e-17!34;UBERON:0002791!5.89e-15!29;UBERON:0003528!5.89e-15!29;UBERON:0001893!5.89e-15!29;UBERON:0007811!9.71e-13!86;UBERON:0000956!1.23e-12!21;UBERON:0001869!1.23e-12!21;UBERON:0000203!1.23e-12!21;UBERON:0000153!1.74e-12!94;UBERON:0002619!1.01e-10!17;UBERON:0000025!2.43e-07!114;UBERON:0002021!3.33e-07!10;UBERON:0000411!3.33e-07!10;UBERON:0001950!3.33e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.89e-31,73;UBERON:0001016,2.82e-30,75;UBERON:0002020,4.31e-26,34;UBERON:0000073,5.99e-25,54;UBERON:0004121,1.15e-22,95;UBERON:0000924,1.15e-22,95;UBERON:0006601,1.15e-22,95;UBERON:0003528,8.88e-22,29;UBERON:0002791,8.88e-22,29;UBERON:0001893,8.88e-22,29;UBERON:0000956,2.21e-20,21;UBERON:0001869,2.21e-20,21;UBERON:0000203,2.21e-20,21;UBERON:0001049,1.82e-19,52;UBERON:0005068,1.82e-19,52;UBERON:0006241,1.82e-19,52;UBERON:0007135,1.82e-19,52;UBERON:0002780,2.43e-17,39;UBERON:0001890,2.43e-17,39;UBERON:0006240,2.43e-17,39;UBERON:0003080,8.20e-17,40;UBERON:0002616,4.67e-16,46;UBERON:0000955,1.25e-15,47;UBERON:0006238,1.25e-15,47;UBERON:0002346,6.08e-15,64;UBERON:0003075,6.08e-15,64;UBERON:0007284,6.08e-15,64;UBERON:0002619,1.08e-14,17;UBERON:0003056,5.00e-13,49;UBERON:0010371,1.58e-12,73;UBERON:0010314,4.77e-10,92;UBERON:0002021,1.83e-09,10;UBERON:0000411,1.83e-09,10;UBERON:0001950,1.83e-09,10;UBERON:0004684,1.69e-08,3;UBERON:0002275,1.69e-08,3;UBERON:0011216,5.49e-08,194 | |||
|phase1_expression=0,0,0,0,0,0,0.233612640595526,0.129123323441576,0,0,0.171217968225505,0,0,0,0,0,0,0,0,0,0.0850432901510698,0.198581902401771,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.101376931219515,0.183546752161682,0.782391344348039,2.18025156380447,0.878744730937887,2.13872888981712,1.67983705950435,0,0.167782606057736,0,0,0,0.286533439938757,0.515672092277442,2.42779753031517,3.1739458756322,1.90149421051854,0,1.77858959222228,0.449949858640699,0,0,1.19840044207362,3.07374644257244,2.48855069540346,3.78016627328734,2.52389953621658,0.285650984403804,2.65042249141936,1.10241719293459,3.54628242767475,2.75765635983006,2.20231761998777,1.53224805702225,1.22885226604995,1.97829431595291,2.10421580285542,2.6045668527838,0.837548997004143,0,0.763991238884051,2.06240009831567,1.28134512719193,0.559198337475902,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0.511290967734173,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,0.253359865475099,0,0,0,0.29688427812965,0,1.21786191324856,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0.323533699894818,0,0,0,0.585561594023094,0.41889341362691,0.255457055208591,0.599075622529601,0,0.127070227073065,0.449371918214468,0.457500602818626,0.251308704225729,0.173824320192276,0.511430914660661,0.83115217823824,0.486723789203273,0.509196819251581,0.248813941220186,0.252722758433675,0.210441855886474,0.260240885925407,0.689706313300419,0.180062129805349,0.150704817835715,0.476255494059295,0.640568601424249,0.655912071918102,0,0.215567992932842,0.189106080167819,0.527853372491847,0,0,0.348252166522167,0.411564272815887,0,0,0.257347907114715,0,0.414251545071004,0,0,0,0,0.154267112887378,0.465067889500816,0,0.116765342367169,0.16455984991348,0,0,0,0.219550115291051,0.134206418760372,0.210289948564127,0.617427674275707,0,0,0,0.232236671860439,0.128867461322093,0.201683524623343,0,0,0,0,0,0.198956472041151,0.19496408711912,0,0,0,0.379335801906163,0.342745537829186,0,0.203651327845314,0.387904974335251,0.0701358198903186,0.189709611372772,0,0.470996183524124,0.123397163921801,0,0,0,0,0.202860121388503,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0.184753190166605,0.37898282354097,0,0.169745085775188,0,0,0,0.195133647857799,0,0.221464689648775,0,0.163863314715738,0,0.144649058581512,0,0,0,0,0.642202359951168,0.117211686592203,0,0,0.631016438832513,0.390438744296638,0.861693590931196,0.477937595905104,0.445597348164788,0.283076530788832,0,1.16902343164525,0.395287777946524,0.321321316421807,0,0.35613120733451,0.81443479676788,0.164970122972535,0,0.485561272309963,0.302323556964751,0.188605079755898,0,0,0,0.363533729477506,0,0,0,0,0.680879211507576,0.900305470156551,0.388076051348264,0.428674070063185,0.532020700926821,0.178368817602071,0.329098041204242,1.522324745573,0,0,0,0,0.322928853391811,0.0603129249281559,0.119372344003136,0.328281799490123,0,0.556275906031529,0,0,0,0.188368457004691,0,0,0.339956859987711,0.139951452323658,0,0,0.316335993581135,0.406638934253697,0,0.209088296014469,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0,0,0,0,0,0.258319646955462,0,0,0.13020438484395,0,0.241584120826006,0,0,0,0.205421914329655,0.129920822977795,0,0,0.120195449519969,0.147689527174577,0.100966449948148,0.0762068066549998,0.201652370273681,0.0974578807397524,0.0962118416403295,0,0,0,0.0897138566094757,0,0.19318959403219,0,0,0.428736758158132,0,2.25900737046827,2.76195141904306,0.572895513439397,0.68741272937475,1.37016503954128,0.755393897389701,0.675022500231806,2.2516060161211,2.26571204492102,1.03552062350364,0.103787347584177,0,0.341467211508268,0,0.209613162627982,0.367687016900028,0.44449345560323,0.206035057238894,0.320919209591815,0,0,0.188626341386076,0.749132059759059,0.384150914429216,0.459483751644906,0,0,0.192909220463705,0,0.147198920134397,0,0,0.238436189947321,0.145346416632329,0.658765662907314,0.169229215783353,0.182927972872773,0,0.271608227691724,0.561142271657738,0.237270036248348,0.0985044823755635,0,0.309873682371932,0.578719832943424,0.249810577937946,0,0,0.57386499620653,0,0.463735671240843 | |||
|short_description=p@chr17:56594384..56594396,- | |||
}} |
Revision as of 14:59, 13 September 2013
Short description: | p@chr17:56594384..56594396, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:56594384..56594396, - |
Coexpression cluster: | MCL_coexpression_mm9:670 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.70e-36 | 23 |
neuroblast (sensu Vertebrata) | 2.70e-36 | 23 |
neural cell | 1.00e-32 | 43 |
ectodermal cell | 7.26e-32 | 44 |
neurectodermal cell | 7.26e-32 | 44 |
neuron | 8.28e-27 | 33 |
neuronal stem cell | 8.28e-27 | 33 |
neuroblast | 8.28e-27 | 33 |
electrically signaling cell | 8.28e-27 | 33 |
electrically responsive cell | 4.99e-22 | 39 |
electrically active cell | 4.99e-22 | 39 |
embryonic cell | 4.15e-18 | 70 |
neuron of cerebral cortex | 2.21e-17 | 6 |
somatic stem cell | 3.23e-10 | 91 |
multi fate stem cell | 3.23e-10 | 91 |
granule cell | 2.29e-09 | 3 |
stem cell | 2.74e-09 | 97 |
hippocampal neuron | 3.16e-09 | 3 |
striatum neuron | 4.62e-09 | 3 |
raphe nuclei neuron | 1.69e-08 | 3 |
oligodendrocyte precursor cell | 2.01e-08 | 8 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.