FFCP PHASE1:Mm9::chr16:81200970..81200984,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=17968|HGNC=|MCL_coexpression_id=1|UniProt=O35136,Q71VC5|association_with_transcript=28bp_to_ENSMUST00000037785,ENSMUST00000067602,NM_001113208,NM_010954,uc007zta.2,uc007ztb.2_5end|description=CAGE_peak_3_at_Ncam2_5end|id=chr16:81200970..81200984,+|ontology_enrichment_celltype=CL:0000540!3.91e-14!33;CL:0000047!3.91e-14!33;CL:0000031!3.91e-14!33;CL:0000404!3.91e-14!33;CL:0000117!1.76e-12!23;CL:0000337!1.76e-12!23;CL:0000393!7.03e-10!39;CL:0000211!7.03e-10!39;CL:0000221!2.48e-09!44;CL:0000133!2.48e-09!44;CL:0002319!6.90e-09!43|ontology_enrichment_celltype_v019_2=CL:0000117,2.32e-13,23;CL:0000337,2.32e-13,23;CL:0000540,4.01e-12,33;CL:0000047,4.01e-12,33;CL:0000031,4.01e-12,33;CL:0000404,4.01e-12,33;CL:0000393,2.47e-09,39;CL:0000211,2.47e-09,39;CL:0000221,1.53e-08,44;CL:0000133,1.53e-08,44;CL:0002319,6.22e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.39e-26!73;UBERON:0005743!3.39e-26!73;UBERON:0000073!1.43e-25!75;UBERON:0001016!1.43e-25!75;UBERON:0002346!3.16e-25!71;UBERON:0003075!3.16e-25!71;UBERON:0007284!3.16e-25!71;UBERON:0004121!3.73e-25!102;UBERON:0000924!3.73e-25!102;UBERON:0006601!3.73e-25!102;UBERON:0000033!1.70e-23!63;UBERON:0001049!3.20e-22!52;UBERON:0005068!3.20e-22!52;UBERON:0006241!3.20e-22!52;UBERON:0007135!3.20e-22!52;UBERON:0000955!1.12e-20!50;UBERON:0006238!1.12e-20!50;UBERON:0002616!5.13e-20!49;UBERON:0003056!3.03e-19!49;UBERON:0002020!3.96e-18!34;UBERON:0003080!6.52e-17!40;UBERON:0002780!3.95e-16!39;UBERON:0001890!3.95e-16!39;UBERON:0006240!3.95e-16!39;UBERON:0002791!1.43e-14!29;UBERON:0003528!1.43e-14!29;UBERON:0001893!1.43e-14!29;UBERON:0007811!9.43e-11!86;UBERON:0000153!3.29e-10!94;UBERON:0000956!1.09e-09!21;UBERON:0001869!1.09e-09!21;UBERON:0000203!1.09e-09!21;UBERON:0002021!7.99e-09!10;UBERON:0000411!7.99e-09!10;UBERON:0001950!7.99e-09!10;UBERON:0002619!1.38e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.59e-29,73;UBERON:0001016,3.78e-28,75;UBERON:0000073,1.44e-27,54;UBERON:0001049,2.87e-25,52;UBERON:0005068,2.87e-25,52;UBERON:0006241,2.87e-25,52;UBERON:0007135,2.87e-25,52;UBERON:0002346,1.40e-24,64;UBERON:0003075,1.40e-24,64;UBERON:0007284,1.40e-24,64;UBERON:0004121,1.26e-23,95;UBERON:0000924,1.26e-23,95;UBERON:0006601,1.26e-23,95;UBERON:0002020,1.49e-22,34;UBERON:0010371,2.90e-21,73;UBERON:0000955,1.07e-19,47;UBERON:0006238,1.07e-19,47;UBERON:0002616,9.99e-19,46;UBERON:0003528,7.86e-17,29;UBERON:0002791,7.86e-17,29;UBERON:0001893,7.86e-17,29;UBERON:0003080,5.52e-16,40;UBERON:0010314,3.95e-15,92;UBERON:0002780,7.19e-15,39;UBERON:0001890,7.19e-15,39;UBERON:0006240,7.19e-15,39;UBERON:0003056,8.58e-15,49;UBERON:0002021,3.33e-14,10;UBERON:0000411,3.33e-14,10;UBERON:0001950,3.33e-14,10;UBERON:0003076,2.33e-10,12;UBERON:0003057,2.33e-10,12;UBERON:0002619,2.66e-10,17;UBERON:0002420,8.46e-10,8;UBERON:0007245,8.46e-10,8;UBERON:0010009,8.46e-10,8;UBERON:0010011,8.46e-10,8;UBERON:0000454,8.46e-10,8;UBERON:0000956,3.22e-09,21;UBERON:0001869,3.22e-09,21;UBERON:0000203,3.22e-09,21;UBERON:0002240,1.44e-08,6;UBERON:0005174,1.44e-08,6;UBERON:0001137,1.44e-08,6;UBERON:0001948,1.88e-07,5;UBERON:0002315,1.88e-07,5|phase1_expression=0.960893082628764,0,0,0.30246421130683,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12608225377674,0.198581902401771,2.61199789138935,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,4.04632921719196,2.11596391708813,2.53532561402472,0,0,0,0,0,0,0,0.518448061542388,0.405017814995072,0.841299845405528,4.85606673486466,5.52171352379034,0.244981598429908,0.383381884072945,0.919218786610021,6.60695285996332,5.49055553766307,6.75868746327471,2.2420668914133,2.37867873366265,1.56274011167028,2.79182999001381,10.1297269805702,8.40390362772456,14.7314292736834,8.82704420954438,4.28718725398191,0,0.377857800533928,0,0,0,0,0,0,0.280888840263504,0,0,0,1.97180787687353,0,0,0,0,0,0,0.68510327831436,0,0,0.520455980298408,0,0.461230994512117,0.452167921657868,1.17588707135705,0.125666591329675,0,0,0,0.161766849947409,0,0,0,4.9772735491963,4.81727425670947,0,0,0,0,10.1857634795279,7.77751024791665,2.26177833803156,7.30062144807561,8.18289463457058,7.48036960414416,6.65189178577806,0,0,0,1.47309299120532,0.260240885925407,0.459804208866946,0.720248519221397,0.30140963567143,1.08858398642125,0.896796041993948,0.655912071918102,1.81092359517311,0,0.189106080167819,0.175951124163949,0,0.278047249225598,0.348252166522167,0.61734640922383,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0,6.09840850835969,1.85228302282712,0.330418782983798,0,0.213288250535234,0.696710015581316,0.257734922644187,0.403367049246685,0,0.570676878337677,0,0.494096864172033,0.502670417600539,0.198956472041151,0.19496408711912,0,0.216138049874694,0,0.379335801906163,0.114248512609729,0,0,0.193952487167626,0,0.0632365371242573,0.147610147979602,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0.234690248288502,0,0,0.19513364785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| ||
|EntrezGene=17968 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=O35136,Q71VC5 | |||
|association_with_transcript=28bp_to_ENSMUST00000037785,ENSMUST00000067602,NM_001113208,NM_010954,uc007zta.2,uc007ztb.2_5end | |||
|description=CAGE_peak_3_at_Ncam2_5end | |||
|id=chr16:81200970..81200984,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.91e-14!33;CL:0000047!3.91e-14!33;CL:0000031!3.91e-14!33;CL:0000404!3.91e-14!33;CL:0000117!1.76e-12!23;CL:0000337!1.76e-12!23;CL:0000393!7.03e-10!39;CL:0000211!7.03e-10!39;CL:0000221!2.48e-09!44;CL:0000133!2.48e-09!44;CL:0002319!6.90e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.32e-13,23;CL:0000337,2.32e-13,23;CL:0000540,4.01e-12,33;CL:0000047,4.01e-12,33;CL:0000031,4.01e-12,33;CL:0000404,4.01e-12,33;CL:0000393,2.47e-09,39;CL:0000211,2.47e-09,39;CL:0000221,1.53e-08,44;CL:0000133,1.53e-08,44;CL:0002319,6.22e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.39e-26!73;UBERON:0005743!3.39e-26!73;UBERON:0000073!1.43e-25!75;UBERON:0001016!1.43e-25!75;UBERON:0002346!3.16e-25!71;UBERON:0003075!3.16e-25!71;UBERON:0007284!3.16e-25!71;UBERON:0004121!3.73e-25!102;UBERON:0000924!3.73e-25!102;UBERON:0006601!3.73e-25!102;UBERON:0000033!1.70e-23!63;UBERON:0001049!3.20e-22!52;UBERON:0005068!3.20e-22!52;UBERON:0006241!3.20e-22!52;UBERON:0007135!3.20e-22!52;UBERON:0000955!1.12e-20!50;UBERON:0006238!1.12e-20!50;UBERON:0002616!5.13e-20!49;UBERON:0003056!3.03e-19!49;UBERON:0002020!3.96e-18!34;UBERON:0003080!6.52e-17!40;UBERON:0002780!3.95e-16!39;UBERON:0001890!3.95e-16!39;UBERON:0006240!3.95e-16!39;UBERON:0002791!1.43e-14!29;UBERON:0003528!1.43e-14!29;UBERON:0001893!1.43e-14!29;UBERON:0007811!9.43e-11!86;UBERON:0000153!3.29e-10!94;UBERON:0000956!1.09e-09!21;UBERON:0001869!1.09e-09!21;UBERON:0000203!1.09e-09!21;UBERON:0002021!7.99e-09!10;UBERON:0000411!7.99e-09!10;UBERON:0001950!7.99e-09!10;UBERON:0002619!1.38e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.59e-29,73;UBERON:0001016,3.78e-28,75;UBERON:0000073,1.44e-27,54;UBERON:0001049,2.87e-25,52;UBERON:0005068,2.87e-25,52;UBERON:0006241,2.87e-25,52;UBERON:0007135,2.87e-25,52;UBERON:0002346,1.40e-24,64;UBERON:0003075,1.40e-24,64;UBERON:0007284,1.40e-24,64;UBERON:0004121,1.26e-23,95;UBERON:0000924,1.26e-23,95;UBERON:0006601,1.26e-23,95;UBERON:0002020,1.49e-22,34;UBERON:0010371,2.90e-21,73;UBERON:0000955,1.07e-19,47;UBERON:0006238,1.07e-19,47;UBERON:0002616,9.99e-19,46;UBERON:0003528,7.86e-17,29;UBERON:0002791,7.86e-17,29;UBERON:0001893,7.86e-17,29;UBERON:0003080,5.52e-16,40;UBERON:0010314,3.95e-15,92;UBERON:0002780,7.19e-15,39;UBERON:0001890,7.19e-15,39;UBERON:0006240,7.19e-15,39;UBERON:0003056,8.58e-15,49;UBERON:0002021,3.33e-14,10;UBERON:0000411,3.33e-14,10;UBERON:0001950,3.33e-14,10;UBERON:0003076,2.33e-10,12;UBERON:0003057,2.33e-10,12;UBERON:0002619,2.66e-10,17;UBERON:0002420,8.46e-10,8;UBERON:0007245,8.46e-10,8;UBERON:0010009,8.46e-10,8;UBERON:0010011,8.46e-10,8;UBERON:0000454,8.46e-10,8;UBERON:0000956,3.22e-09,21;UBERON:0001869,3.22e-09,21;UBERON:0000203,3.22e-09,21;UBERON:0002240,1.44e-08,6;UBERON:0005174,1.44e-08,6;UBERON:0001137,1.44e-08,6;UBERON:0001948,1.88e-07,5;UBERON:0002315,1.88e-07,5 | |||
|phase1_expression=0.960893082628764,0,0,0.30246421130683,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12608225377674,0.198581902401771,2.61199789138935,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,4.04632921719196,2.11596391708813,2.53532561402472,0,0,0,0,0,0,0,0.518448061542388,0.405017814995072,0.841299845405528,4.85606673486466,5.52171352379034,0.244981598429908,0.383381884072945,0.919218786610021,6.60695285996332,5.49055553766307,6.75868746327471,2.2420668914133,2.37867873366265,1.56274011167028,2.79182999001381,10.1297269805702,8.40390362772456,14.7314292736834,8.82704420954438,4.28718725398191,0,0.377857800533928,0,0,0,0,0,0,0.280888840263504,0,0,0,1.97180787687353,0,0,0,0,0,0,0.68510327831436,0,0,0.520455980298408,0,0.461230994512117,0.452167921657868,1.17588707135705,0.125666591329675,0,0,0,0.161766849947409,0,0,0,4.9772735491963,4.81727425670947,0,0,0,0,10.1857634795279,7.77751024791665,2.26177833803156,7.30062144807561,8.18289463457058,7.48036960414416,6.65189178577806,0,0,0,1.47309299120532,0.260240885925407,0.459804208866946,0.720248519221397,0.30140963567143,1.08858398642125,0.896796041993948,0.655912071918102,1.81092359517311,0,0.189106080167819,0.175951124163949,0,0.278047249225598,0.348252166522167,0.61734640922383,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0,6.09840850835969,1.85228302282712,0.330418782983798,0,0.213288250535234,0.696710015581316,0.257734922644187,0.403367049246685,0,0.570676878337677,0,0.494096864172033,0.502670417600539,0.198956472041151,0.19496408711912,0,0.216138049874694,0,0.379335801906163,0.114248512609729,0,0,0.193952487167626,0,0.0632365371242573,0.147610147979602,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0.234690248288502,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,6.10092241953609,6.68106613575558,0,0,0.631016438832513,1.56175497718655,1.29254038639679,0.238968797952552,0.668396022247182,0,0.809621403349789,1.46127928955656,1.58115111178609,4.81981974632711,0,0.178065603667255,0.488660878060728,0,0,0,0.302323556964751,0,0.295301892880773,0,0,0,0.356497378384721,0.948110273807448,0,0,1.36175842301515,0,0.258717367565509,0.214337035031592,0.709360934569094,0.713475270408282,0.493647061806363,0.608929898229199,0,0,0,0.16488625294148,0.322928853391811,0,0.119372344003136,0,0.291480836629851,5.7481843623258,0,0.206386867963223,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.216010681643603,0,0.87345025498471,0.269728692769641,0.991841468704031,0.523511883968059,0,0,0,0,0,0,0.129159823477731,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453460767230423,0,0,0,0.19318959403219,0,0,0,0,10.7302850097243,7.36520378411483,9.16632821503035,10.4830441229649,8.22099023724771,10.5755145634558,5.40018000185445,6.75481804836331,3.62513927187364,9.83744592328458,0,2.39414924040619,0.512200817262403,1.21553358534147,0.838452650511929,0.735374033800057,1.55572709461131,0.412070114477788,0.962757628775446,0.505394423527595,1.2673964994512,0.754505365544305,1.591905626988,1.34452820050225,1.55075766180156,0.952587382566147,1.27472758539341,1.54327376370964,2.47251540481984,1.03039244094078,0.685738504770831,1.06485483695602,1.66905332963125,1.74415699958794,1.50575008664529,0.930760686808441,1.64635175585495,0.789209134313529,1.35804113845862,0.561142271657738,1.30498519936592,0.985044823755635,2.45538625901814,1.70430525304563,0.578719832943424,1.99848462350357,0.701794825336225,1.93383948643468,0.57386499620653,0.220591419119515,0.695603506861264 | |||
|short_description=p3@Ncam2 | |||
}} |
Revision as of 13:09, 13 September 2013
Short description: | p3@Ncam2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ncam2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 28bp_to_ENSMUST00000037785, ENSMUST00000067602, NM_001113208, NM_010954, uc007zta.2, uc007ztb.2_5end |
EntrezGene: | Ncam2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.32e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.32e-13 | 23 |
neuron | 4.01e-12 | 33 |
neuronal stem cell | 4.01e-12 | 33 |
neuroblast | 4.01e-12 | 33 |
electrically signaling cell | 4.01e-12 | 33 |
electrically responsive cell | 2.47e-09 | 39 |
electrically active cell | 2.47e-09 | 39 |
ectodermal cell | 1.53e-08 | 44 |
neurectodermal cell | 1.53e-08 | 44 |
neural cell | 6.22e-08 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.