FFCP PHASE1:Mm9::chr16:38089567..38089622,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56637|HGNC=|UniProt=Q9WV60,Q5KU03|association_with_transcript=480bp_to_ENSMUST00000023507,NM_019827,uc007zen.1_5end|description=CAGE_peak_1_at_Gsk3b_5end|id=chr16:38089567..38089622,+|ontology_enrichment_celltype=CL:0000540!9.92e-14!33;CL:0000047!9.92e-14!33;CL:0000031!9.92e-14!33;CL:0000404!9.92e-14!33;CL:0000117!1.80e-12!23;CL:0000337!1.80e-12!23;CL:0000393!5.63e-10!39;CL:0000211!5.63e-10!39;CL:0002319!1.94e-07!43;CL:0000221!2.46e-07!44;CL:0000133!2.46e-07!44|ontology_enrichment_celltype_v019_2=CL:0000540,9.92e-14,33;CL:0000047,9.92e-14,33;CL:0000031,9.92e-14,33;CL:0000404,9.92e-14,33;CL:0000117,1.80e-12,23;CL:0000337,1.80e-12,23;CL:0000393,5.63e-10,39;CL:0000211,5.63e-10,39;CL:0002319,1.94e-07,43;CL:0000221,2.46e-07,44;CL:0000133,2.46e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!5.90e-16!102;UBERON:0000924!5.90e-16!102;UBERON:0006601!5.90e-16!102;UBERON:0001017!1.53e-14!73;UBERON:0005743!1.53e-14!73;UBERON:0000073!1.74e-14!75;UBERON:0001016!1.74e-14!75;UBERON:0000033!3.86e-13!63;UBERON:0002346!1.57e-12!71;UBERON:0003075!1.57e-12!71;UBERON:0007284!1.57e-12!71;UBERON:0001049!8.06e-12!52;UBERON:0005068!8.06e-12!52;UBERON:0006241!8.06e-12!52;UBERON:0007135!8.06e-12!52;UBERON:0000153!1.20e-11!94;UBERON:0003056!3.55e-11!49;UBERON:0007811!1.65e-10!86;UBERON:0000955!1.66e-10!50;UBERON:0006238!1.66e-10!50;UBERON:0002020!3.97e-10!34;UBERON:0002616!5.78e-10!49;UBERON:0003080!1.70e-08!40;UBERON:0002780!5.45e-08!39;UBERON:0001890!5.45e-08!39;UBERON:0006240!5.45e-08!39;UBERON:0000468!5.77e-08!333;UBERON:0002791!1.36e-07!29;UBERON:0003528!1.36e-07!29;UBERON:0001893!1.36e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.23e-18,95;UBERON:0000924,3.23e-18,95;UBERON:0006601,3.23e-18,95;UBERON:0002346,4.32e-15,64;UBERON:0003075,4.32e-15,64;UBERON:0007284,4.32e-15,64;UBERON:0010371,4.94e-15,73;UBERON:0001017,1.53e-14,73;UBERON:0001016,1.74e-14,75;UBERON:0000073,1.77e-12,54;UBERON:0001049,8.06e-12,52;UBERON:0005068,8.06e-12,52;UBERON:0006241,8.06e-12,52;UBERON:0007135,8.06e-12,52;UBERON:0003056,3.55e-11,49;UBERON:0002020,3.97e-10,34;UBERON:0010314,1.37e-09,92;UBERON:0000955,1.97e-09,47;UBERON:0006238,1.97e-09,47;UBERON:0002616,6.62e-09,46;UBERON:0003080,1.70e-08,40;UBERON:0002780,5.45e-08,39;UBERON:0001890,5.45e-08,39;UBERON:0006240,5.45e-08,39;UBERON:0003528,1.36e-07,29;UBERON:0002791,1.36e-07,29;UBERON:0001893,1.36e-07,29|phase1_expression=69.5045996434806,84.8010240563647,90.0898493991281,155.466604611711,178.819775590846,60.6044171601922,49.5258798062514,55.2647824329946,42.0958279233484,43.7700664222128,8.73211637950075,13.6410391882025,61.8034635051653,63.7294733634491,17.3217076144145,19.2351504020335,12.5921138063066,30.5998300397491,32.4961207645601,28.8584963222661,60.6358658777128,26.0142292146319,24.291580389921,45.5978404961209,41.2936705920906,66.0366758732273,55.1375355083616,46.9727287255238,51.6863700921337,52.1702368603057,37.9159173220571,14.6057054895715,16.6067492647834,15.8481681015439,26.285497397366,19.6156881523021,28.1753711642069,63.61680787201,35.9414258480948,40.3113282859825,72.9407045158458,68.3045484958446,65.0583873061746,47.5889971947682,50.1815809536597,44.0512205188036,39.119567217402,35.7561256463932,33.8316721411087,35.9695313287424,43.1158178606117,33.0630898039435,23.1539996359676,55.8528849348735,56.1276644567915,48.8792928468299,50.4298854292212,52.5985534122991,152.141978566418,123.783889149656,131.836931929285,36.2563649313971,28.4574334755565,31.496490104849,22.7439263390404,24.8668040231135,34.1544125990981,30.7374644257244,145.891284518028,125.015498895146,135.238950148939,107.690421120234,96.5195523958551,123.838198006319,110.413982613008,94.6795350208322,93.5984988494804,90.4026353643129,94.7752310191022,151.405458314263,136.133613680386,109.39180781692,79.5671547153936,79.9122906244986,86.6366064894513,149.082064249676,144.934371053487,133.648402656741,59.2936093798831,77.0829913089212,56.8134397855288,31.8356834483113,55.0776780303278,26.9851595818909,27.9403859502498,41.2184736129549,49.5768803065084,50.276945160527,33.2526085891672,38.5140136216271,63.6612257390596,97.5281228348816,96.8259910885254,127.9920065676,18.185247444942,21.5355885653834,19.7154533555765,53.5522395882391,87.2620667890969,62.6425826853561,53.2599953172037,49.0189420082547,45.6618684566996,44.312456322471,68.5542162601159,44.3603067393754,95.1700625777339,84.7352231550682,36.2690326299448,60.9861024301733,49.2476586166678,47.0328995541165,31.6865994070808,106.279429315192,99.2777390295777,55.9450950906815,17.2533779288525,13.7977628128484,19.3146745151058,134.062622267316,123.982663363848,152.921346521356,94.3866058644061,91.5461337242583,133.399924607238,106.916992361652,75.5648079769347,46.777020949395,53.3245020295054,132.999252920252,68.7035938843076,65.5220997635398,88.7706299940372,78.5172100924075,110.69538411921,104.540795752437,109.349912561204,123.918914583989,74.3709575618306,85.0977360755187,86.9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| ||
|EntrezGene=56637 | |||
|HGNC= | |||
|UniProt=Q9WV60,Q5KU03 | |||
|association_with_transcript=480bp_to_ENSMUST00000023507,NM_019827,uc007zen.1_5end | |||
|description=CAGE_peak_1_at_Gsk3b_5end | |||
|id=chr16:38089567..38089622,+ | |||
|ontology_enrichment_celltype=CL:0000540!9.92e-14!33;CL:0000047!9.92e-14!33;CL:0000031!9.92e-14!33;CL:0000404!9.92e-14!33;CL:0000117!1.80e-12!23;CL:0000337!1.80e-12!23;CL:0000393!5.63e-10!39;CL:0000211!5.63e-10!39;CL:0002319!1.94e-07!43;CL:0000221!2.46e-07!44;CL:0000133!2.46e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,9.92e-14,33;CL:0000047,9.92e-14,33;CL:0000031,9.92e-14,33;CL:0000404,9.92e-14,33;CL:0000117,1.80e-12,23;CL:0000337,1.80e-12,23;CL:0000393,5.63e-10,39;CL:0000211,5.63e-10,39;CL:0002319,1.94e-07,43;CL:0000221,2.46e-07,44;CL:0000133,2.46e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.90e-16!102;UBERON:0000924!5.90e-16!102;UBERON:0006601!5.90e-16!102;UBERON:0001017!1.53e-14!73;UBERON:0005743!1.53e-14!73;UBERON:0000073!1.74e-14!75;UBERON:0001016!1.74e-14!75;UBERON:0000033!3.86e-13!63;UBERON:0002346!1.57e-12!71;UBERON:0003075!1.57e-12!71;UBERON:0007284!1.57e-12!71;UBERON:0001049!8.06e-12!52;UBERON:0005068!8.06e-12!52;UBERON:0006241!8.06e-12!52;UBERON:0007135!8.06e-12!52;UBERON:0000153!1.20e-11!94;UBERON:0003056!3.55e-11!49;UBERON:0007811!1.65e-10!86;UBERON:0000955!1.66e-10!50;UBERON:0006238!1.66e-10!50;UBERON:0002020!3.97e-10!34;UBERON:0002616!5.78e-10!49;UBERON:0003080!1.70e-08!40;UBERON:0002780!5.45e-08!39;UBERON:0001890!5.45e-08!39;UBERON:0006240!5.45e-08!39;UBERON:0000468!5.77e-08!333;UBERON:0002791!1.36e-07!29;UBERON:0003528!1.36e-07!29;UBERON:0001893!1.36e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.23e-18,95;UBERON:0000924,3.23e-18,95;UBERON:0006601,3.23e-18,95;UBERON:0002346,4.32e-15,64;UBERON:0003075,4.32e-15,64;UBERON:0007284,4.32e-15,64;UBERON:0010371,4.94e-15,73;UBERON:0001017,1.53e-14,73;UBERON:0001016,1.74e-14,75;UBERON:0000073,1.77e-12,54;UBERON:0001049,8.06e-12,52;UBERON:0005068,8.06e-12,52;UBERON:0006241,8.06e-12,52;UBERON:0007135,8.06e-12,52;UBERON:0003056,3.55e-11,49;UBERON:0002020,3.97e-10,34;UBERON:0010314,1.37e-09,92;UBERON:0000955,1.97e-09,47;UBERON:0006238,1.97e-09,47;UBERON:0002616,6.62e-09,46;UBERON:0003080,1.70e-08,40;UBERON:0002780,5.45e-08,39;UBERON:0001890,5.45e-08,39;UBERON:0006240,5.45e-08,39;UBERON:0003528,1.36e-07,29;UBERON:0002791,1.36e-07,29;UBERON:0001893,1.36e-07,29 | |||
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| |||
|short_description=p1@Gsk3b | |||
}} |
Revision as of 12:36, 13 September 2013
Short description: | p1@Gsk3b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gsk3b_5end |
Coexpression cluster: | NA |
Association with transcript: | 480bp_to_ENSMUST00000023507, NM_019827, uc007zen.1_5end |
EntrezGene: | Gsk3b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 9.92e-14 | 33 |
neuronal stem cell | 9.92e-14 | 33 |
neuroblast | 9.92e-14 | 33 |
electrically signaling cell | 9.92e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.80e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.80e-12 | 23 |
electrically responsive cell | 5.63e-10 | 39 |
electrically active cell | 5.63e-10 | 39 |
neural cell | 1.94e-07 | 43 |
ectodermal cell | 2.46e-07 | 44 |
neurectodermal cell | 2.46e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.23e-18 | 95 |
ectoderm | 3.23e-18 | 95 |
presumptive ectoderm | 3.23e-18 | 95 |
neurectoderm | 4.32e-15 | 64 |
neural plate | 4.32e-15 | 64 |
presumptive neural plate | 4.32e-15 | 64 |
ecto-epithelium | 4.94e-15 | 73 |
central nervous system | 1.53e-14 | 73 |
nervous system | 1.74e-14 | 75 |
regional part of nervous system | 1.77e-12 | 54 |
neural tube | 8.06e-12 | 52 |
neural rod | 8.06e-12 | 52 |
future spinal cord | 8.06e-12 | 52 |
neural keel | 8.06e-12 | 52 |
pre-chordal neural plate | 3.55e-11 | 49 |
gray matter | 3.97e-10 | 34 |
structure with developmental contribution from neural crest | 1.37e-09 | 92 |
brain | 1.97e-09 | 47 |
future brain | 1.97e-09 | 47 |
regional part of brain | 6.62e-09 | 46 |
anterior neural tube | 1.70e-08 | 40 |
regional part of forebrain | 5.45e-08 | 39 |
forebrain | 5.45e-08 | 39 |
future forebrain | 5.45e-08 | 39 |
brain grey matter | 1.36e-07 | 29 |
regional part of telencephalon | 1.36e-07 | 29 |
telencephalon | 1.36e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.