FFCP PHASE1:Mm9::chr16:35769414..35769434,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=224132|HGNC=|UniProt=D6RI31|association_with_transcript=0bp_to_ENSMUST00000149892_5end|description=CAGE_peak_4_at_Dirc2_5end|id=chr16:35769414..35769434,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004111!2.11e-11!122;UBERON:0001049!3.96e-11!52;UBERON:0005068!3.96e-11!52;UBERON:0006241!3.96e-11!52;UBERON:0007135!3.96e-11!52;UBERON:0001017!5.37e-11!73;UBERON:0005743!5.37e-11!73;UBERON:0000025!9.77e-11!114;UBERON:0000073!1.78e-10!75;UBERON:0001016!1.78e-10!75;UBERON:0004121!5.13e-10!102;UBERON:0000924!5.13e-10!102;UBERON:0006601!5.13e-10!102;UBERON:0002616!2.33e-09!49;UBERON:0000955!4.08e-09!50;UBERON:0006238!4.08e-09!50;UBERON:0002346!5.62e-09!71;UBERON:0003075!5.62e-09!71;UBERON:0007284!5.62e-09!71;UBERON:0000033!2.19e-08!63;UBERON:0000477!1.99e-07!154;UBERON:0003080!3.53e-07!40;UBERON:0000119!3.69e-07!183;UBERON:0000483!4.43e-07!181;UBERON:0002780!8.37e-07!39;UBERON:0001890!8.37e-07!39;UBERON:0006240!8.37e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.33e-11,52;UBERON:0005068,2.33e-11,52;UBERON:0006241,2.33e-11,52;UBERON:0007135,2.33e-11,52;UBERON:0000073,2.87e-11,54;UBERON:0004111,3.54e-11,122;UBERON:0001017,5.42e-11,73;UBERON:0000025,1.36e-10,114;UBERON:0001016,1.82e-10,75;UBERON:0004121,6.46e-10,95;UBERON:0000924,6.46e-10,95;UBERON:0006601,6.46e-10,95;UBERON:0010314,3.21e-09,92;UBERON:0002346,3.35e-09,64;UBERON:0003075,3.35e-09,64;UBERON:0007284,3.35e-09,64;UBERON:0010371,4.14e-09,73;UBERON:0002616,4.55e-09,46;UBERON:0000955,8.09e-09,47;UBERON:0006238,8.09e-09,47;UBERON:0003080,2.59e-07,40;UBERON:0002780,6.29e-07,39;UBERON:0001890,6.29e-07,39;UBERON:0006240,6.29e-07,39;UBERON:0000119,6.32e-07,176;UBERON:0000483,7.29e-07,174|phase1_expression=1.76163731815273,2.09385244583617,1.81999695755814,2.72217790176147,2.50447864973174,1.34303417529512,0.934450562382103,1.16210991097419,1.12630977721333,1.40438715793196,0.171217968225505,0.159544317990673,2.73921167889929,3.58423649917889,0.666219523631325,3.23960427823721,3.49780939064073,0.473193248037357,0.548457734422955,0.84877930359606,1.61582251287033,3.87234709683453,1.30599894569468,0.639969691173627,0.45881856213434,3.44539178469012,1.7230479846363,2.15471232685889,1.52018735565099,1.51218077855958,1.77384408524244,0,2.46025915033828,0,1.73310971850765,0.664938581433969,1.22501613757421,0,0,0,0.588231488031014,0,0,3.02152363141385,3.4468156614635,2.0190142737785,3.12956537739216,1.74420125104357,2.41654801007919,1.94429899074283,1.1198913730029,2.87505128729943,0.671130424230945,5.80289713609076,3.02484419228218,1.28629718017973,1.43266719969378,0.515672092277442,3.03474691289397,1.05798195854407,5.07065122804943,0.677689064138264,3.55717918444456,0.899899717281399,0,1.4209602298922,0.898800331555214,1.92109152660777,1.97010263386108,2.70011876663381,2.94454945891935,4.28476476605705,2.20868540951614,2.69479758272899,1.24599112323707,1.83843757322004,3.30347642998166,1.40456071893706,2.15049146558741,3.42904348098504,1.73826522844578,1.04182674111352,0.558365998002762,1.12552522006336,2.44477196442896,2.35702868378934,2.13557521198654,3.54158947068071,1.06016670666458,1.28471652181535,2.31891590961342,0,3.39985666853875,4.31762553310254,3.24888208723835,1.79210754838934,0.983110940922263,1.87473354835864,1.29893002301434,1.41335829804136,2.95771181531029,0,0,7.11066703153331,0.649473123033642,0.506719730950197,1.01104889002957,1.48439043634778,0.776813650941515,1.92974780784272,1.38788261412909,0.913396434936424,2.07553947530453,1.05505848386836,1.64624189989987,2.38766523526383,2.47194967734374,1.3013942122792,0,1.45590164952668,1.98757366614354,2.42437626567611,0,1.75668478206928,3.35114730901528,1.27728527604296,1.1981512450592,1.19980546198682,1.77898317902291,2.99581278809645,2.28750301409313,2.76439574648302,3.12883776346098,2.55715457330331,4.77912502486988,4.05603157669394,2.13862664085664,2.48813941220186,1.26361379216837,0.420883711772948,0.910843100738926,1.83921683546778,1.98068342785884,1.05493372485001,2.04109497453984,1.40925092313335,2.15513966487376,1.29351685369508,0.646703978798527,1.89106080167819,2.11141348996739,1.09597866213787,0.834141747676794,1.39300866608867,0.823128545631774,0.59710280045548,0,0,1.13665399758237,1.65700618028402,1.17263029990548,1.2604344302271,0.946978942340841,1.18058539048442,1.07986979021165,1.62773761325285,1.60964040839772,1.63471479314037,2.79751744852917,3.2833492815819,3.64809642956351,4.38599962275997,1.75640092232841,2.41571553768669,3.15434922846191,4.21908910755066,1.98251269790279,0.528901133327089,1.06644125267617,1.16118335930219,0.644337306610467,0.80673409849337,1.11189021922435,1.52180500890047,2.37264530772256,1.81168850196412,1.75934646160189,1.79060824837036,1.9496408711912,0,2.59365659849633,0.995706366271836,0.948339504765408,0.913988100877831,2.25415471346161,0.610953983535943,0.775809948670503,1.33258057791605,1.26473074248515,0.88566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| ||
|EntrezGene=224132 | |||
|HGNC= | |||
|UniProt=D6RI31 | |||
|association_with_transcript=0bp_to_ENSMUST00000149892_5end | |||
|description=CAGE_peak_4_at_Dirc2_5end | |||
|id=chr16:35769414..35769434,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!2.11e-11!122;UBERON:0001049!3.96e-11!52;UBERON:0005068!3.96e-11!52;UBERON:0006241!3.96e-11!52;UBERON:0007135!3.96e-11!52;UBERON:0001017!5.37e-11!73;UBERON:0005743!5.37e-11!73;UBERON:0000025!9.77e-11!114;UBERON:0000073!1.78e-10!75;UBERON:0001016!1.78e-10!75;UBERON:0004121!5.13e-10!102;UBERON:0000924!5.13e-10!102;UBERON:0006601!5.13e-10!102;UBERON:0002616!2.33e-09!49;UBERON:0000955!4.08e-09!50;UBERON:0006238!4.08e-09!50;UBERON:0002346!5.62e-09!71;UBERON:0003075!5.62e-09!71;UBERON:0007284!5.62e-09!71;UBERON:0000033!2.19e-08!63;UBERON:0000477!1.99e-07!154;UBERON:0003080!3.53e-07!40;UBERON:0000119!3.69e-07!183;UBERON:0000483!4.43e-07!181;UBERON:0002780!8.37e-07!39;UBERON:0001890!8.37e-07!39;UBERON:0006240!8.37e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.33e-11,52;UBERON:0005068,2.33e-11,52;UBERON:0006241,2.33e-11,52;UBERON:0007135,2.33e-11,52;UBERON:0000073,2.87e-11,54;UBERON:0004111,3.54e-11,122;UBERON:0001017,5.42e-11,73;UBERON:0000025,1.36e-10,114;UBERON:0001016,1.82e-10,75;UBERON:0004121,6.46e-10,95;UBERON:0000924,6.46e-10,95;UBERON:0006601,6.46e-10,95;UBERON:0010314,3.21e-09,92;UBERON:0002346,3.35e-09,64;UBERON:0003075,3.35e-09,64;UBERON:0007284,3.35e-09,64;UBERON:0010371,4.14e-09,73;UBERON:0002616,4.55e-09,46;UBERON:0000955,8.09e-09,47;UBERON:0006238,8.09e-09,47;UBERON:0003080,2.59e-07,40;UBERON:0002780,6.29e-07,39;UBERON:0001890,6.29e-07,39;UBERON:0006240,6.29e-07,39;UBERON:0000119,6.32e-07,176;UBERON:0000483,7.29e-07,174 | |||
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| |||
|short_description=p4@Dirc2 | |||
}} |
Revision as of 12:32, 13 September 2013
Short description: | p4@Dirc2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Dirc2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000149892_5end |
EntrezGene: | Dirc2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 2.33e-11 | 52 |
neural rod | 2.33e-11 | 52 |
future spinal cord | 2.33e-11 | 52 |
neural keel | 2.33e-11 | 52 |
regional part of nervous system | 2.87e-11 | 54 |
anatomical conduit | 3.54e-11 | 122 |
central nervous system | 5.42e-11 | 73 |
tube | 1.36e-10 | 114 |
nervous system | 1.82e-10 | 75 |
ectoderm-derived structure | 6.46e-10 | 95 |
ectoderm | 6.46e-10 | 95 |
presumptive ectoderm | 6.46e-10 | 95 |
structure with developmental contribution from neural crest | 3.21e-09 | 92 |
neurectoderm | 3.35e-09 | 64 |
neural plate | 3.35e-09 | 64 |
presumptive neural plate | 3.35e-09 | 64 |
ecto-epithelium | 4.14e-09 | 73 |
regional part of brain | 4.55e-09 | 46 |
brain | 8.09e-09 | 47 |
future brain | 8.09e-09 | 47 |
anterior neural tube | 2.59e-07 | 40 |
regional part of forebrain | 6.29e-07 | 39 |
forebrain | 6.29e-07 | 39 |
future forebrain | 6.29e-07 | 39 |
cell layer | 6.32e-07 | 176 |
epithelium | 7.29e-07 | 174 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.