FFCP PHASE1:Hg19::chr4:89680444..89680453,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10144|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19367|TSSclassifier=S|UniProt=|association_with_transcript=-127bp_to_ENST00000515155_5end|coexpression_cluster_id=C11|description=CAGE_peak_31_at_FAM13A_5end|id=chr4:89680444..89680453,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;2.79e-195;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.24e-31!57;UBERON:0005068!1.24e-31!57;UBERON:0006241!1.24e-31!57;UBERON:0007135!1.24e-31!57;UBERON:0002616!2.05e-30!59;UBERON:0005743!4.33e-28!86;UBERON:0007023!6.60e-28!115;UBERON:0000955!1.35e-27!69;UBERON:0006238!1.35e-27!69;UBERON:0001017!3.17e-27!82;UBERON:0003075!5.32e-26!86;UBERON:0007284!5.32e-26!86;UBERON:0000073!6.07e-25!94;UBERON:0001016!6.07e-25!94;UBERON:0002346!1.30e-24!90;UBERON:0002780!3.80e-22!41;UBERON:0001890!3.80e-22!41;UBERON:0006240!3.80e-22!41;UBERON:0003080!1.49e-21!42;UBERON:0001950!1.31e-20!20;UBERON:0000153!1.14e-18!129;UBERON:0007811!1.14e-18!129;UBERON:0002619!1.19e-18!22;UBERON:0000033!1.86e-16!123;UBERON:0000956!2.80e-16!25;UBERON:0000203!2.80e-16!25;UBERON:0003056!6.30e-16!61;UBERON:0001869!4.01e-15!32;UBERON:0004733!2.76e-14!12;UBERON:0002028!2.76e-14!12;UBERON:0007277!2.76e-14!12;UBERON:0002020!3.41e-14!34;UBERON:0003528!3.41e-14!34;UBERON:0001893!3.91e-14!34;UBERON:0002680!1.31e-13!9;UBERON:0001895!1.31e-13!9;UBERON:0010092!1.31e-13!9;UBERON:0004732!3.88e-13!13;UBERON:0004121!9.17e-13!169;UBERON:0000924!2.43e-12!173;UBERON:0006601!2.43e-12!173;UBERON:0002791!5.26e-12!33;UBERON:0003296!5.69e-12!4;UBERON:0010133!5.69e-12!4;UBERON:0001894!1.91e-11!7;UBERON:0006222!1.91e-11!7;UBERON:0003076!2.68e-11!15;UBERON:0003057!2.68e-11!15;UBERON:0000007!3.30e-11!2;UBERON:0002360!3.66e-10!2;UBERON:0000094!3.66e-10!2;UBERON:0007645!3.66e-10!2;UBERON:0001872!3.14e-09!5;UBERON:0000025!1.16e-08!194;UBERON:0002037!2.91e-08!6;UBERON:0006215!2.91e-08!6;UBERON:0000483!5.93e-08!309;UBERON:0000119!8.18e-08!312;UBERON:0000475!1.12e-07!365;UBERON:0000477!1.55e-07!286;UBERON:0000988!3.49e-07!3|ontology_enrichment_uberon_v019=UBERON:0002037;1.83e-98;6!UBERON:0002680;3.75e-66;9!UBERON:0001895;3.75e-66;9!UBERON:0004733;5.59e-50;12!UBERON:0002028;5.59e-50;12!UBERON:0004732;3.04e-46;13!UBERON:0000073;8.26e-09;53!UBERON:0002616;8.26e-09;53!UBERON:0001016;9.28e-08;83!UBERON:0000955;1.68e-07;68!UBERON:0001017;8.51e-07;75|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.83e-98,6;UBERON:0006215,1.83e-98,6;UBERON:0002680,3.75e-66,9;UBERON:0001895,3.75e-66,9;UBERON:0010092,3.75e-66,9;UBERON:0004733,5.59e-50,12;UBERON:0002028,5.59e-50,12;UBERON:0007277,5.59e-50,12;UBERON:0004732,3.04e-46,13;UBERON:0003076,2.90e-40,15;UBERON:0003057,2.90e-40,15;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,3.05163472634166,7.29823115546083,2.36438095162838,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.221858103073705,0,0,0,0,0,0,0,0.14492102861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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10144 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19367 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-127bp_to_ENST00000515155_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_31_at_FAM13A_5end | |||
|id=chr4:89680444..89680453,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.79e-195;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.24e-31!57;UBERON:0005068!1.24e-31!57;UBERON:0006241!1.24e-31!57;UBERON:0007135!1.24e-31!57;UBERON:0002616!2.05e-30!59;UBERON:0005743!4.33e-28!86;UBERON:0007023!6.60e-28!115;UBERON:0000955!1.35e-27!69;UBERON:0006238!1.35e-27!69;UBERON:0001017!3.17e-27!82;UBERON:0003075!5.32e-26!86;UBERON:0007284!5.32e-26!86;UBERON:0000073!6.07e-25!94;UBERON:0001016!6.07e-25!94;UBERON:0002346!1.30e-24!90;UBERON:0002780!3.80e-22!41;UBERON:0001890!3.80e-22!41;UBERON:0006240!3.80e-22!41;UBERON:0003080!1.49e-21!42;UBERON:0001950!1.31e-20!20;UBERON:0000153!1.14e-18!129;UBERON:0007811!1.14e-18!129;UBERON:0002619!1.19e-18!22;UBERON:0000033!1.86e-16!123;UBERON:0000956!2.80e-16!25;UBERON:0000203!2.80e-16!25;UBERON:0003056!6.30e-16!61;UBERON:0001869!4.01e-15!32;UBERON:0004733!2.76e-14!12;UBERON:0002028!2.76e-14!12;UBERON:0007277!2.76e-14!12;UBERON:0002020!3.41e-14!34;UBERON:0003528!3.41e-14!34;UBERON:0001893!3.91e-14!34;UBERON:0002680!1.31e-13!9;UBERON:0001895!1.31e-13!9;UBERON:0010092!1.31e-13!9;UBERON:0004732!3.88e-13!13;UBERON:0004121!9.17e-13!169;UBERON:0000924!2.43e-12!173;UBERON:0006601!2.43e-12!173;UBERON:0002791!5.26e-12!33;UBERON:0003296!5.69e-12!4;UBERON:0010133!5.69e-12!4;UBERON:0001894!1.91e-11!7;UBERON:0006222!1.91e-11!7;UBERON:0003076!2.68e-11!15;UBERON:0003057!2.68e-11!15;UBERON:0000007!3.30e-11!2;UBERON:0002360!3.66e-10!2;UBERON:0000094!3.66e-10!2;UBERON:0007645!3.66e-10!2;UBERON:0001872!3.14e-09!5;UBERON:0000025!1.16e-08!194;UBERON:0002037!2.91e-08!6;UBERON:0006215!2.91e-08!6;UBERON:0000483!5.93e-08!309;UBERON:0000119!8.18e-08!312;UBERON:0000475!1.12e-07!365;UBERON:0000477!1.55e-07!286;UBERON:0000988!3.49e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.83e-98;6!UBERON:0002680;3.75e-66;9!UBERON:0001895;3.75e-66;9!UBERON:0004733;5.59e-50;12!UBERON:0002028;5.59e-50;12!UBERON:0004732;3.04e-46;13!UBERON:0000073;8.26e-09;53!UBERON:0002616;8.26e-09;53!UBERON:0001016;9.28e-08;83!UBERON:0000955;1.68e-07;68!UBERON:0001017;8.51e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.83e-98,6;UBERON:0006215,1.83e-98,6;UBERON:0002680,3.75e-66,9;UBERON:0001895,3.75e-66,9;UBERON:0010092,3.75e-66,9;UBERON:0004733,5.59e-50,12;UBERON:0002028,5.59e-50,12;UBERON:0007277,5.59e-50,12;UBERON:0004732,3.04e-46,13;UBERON:0003076,2.90e-40,15;UBERON:0003057,2.90e-40,15;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89 | |||
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|short_description=p31@FAM13A | |||
}} |
Revision as of 12:17, 13 September 2013
Short description: | p31@FAM13A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_31_at_FAM13A_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -127bp_to_ENST00000515155_5end |
EntrezGene: | FAM13A |
HGNC: | 19367 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.83e-98 | 6 |
rhombic lip | 1.83e-98 | 6 |
regional part of metencephalon | 3.75e-66 | 9 |
metencephalon | 3.75e-66 | 9 |
future metencephalon | 3.75e-66 | 9 |
segmental subdivision of hindbrain | 5.59e-50 | 12 |
hindbrain | 5.59e-50 | 12 |
presumptive hindbrain | 5.59e-50 | 12 |
segmental subdivision of nervous system | 3.04e-46 | 13 |
posterior neural tube | 2.90e-40 | 15 |
chordal neural plate | 2.90e-40 | 15 |
regional part of nervous system | 4.68e-12 | 53 |
regional part of brain | 4.68e-12 | 53 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
brain | 1.53e-09 | 68 |
future brain | 1.53e-09 | 68 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |
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