FFCP PHASE1:Hg19::chr4:88898200..88898221,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C455|description=CAGE_peak_at_chr4:88898200..88898221,+|id=chr4:88898200..88898221,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000235;8.14e-37;6!CL:0000319;3.10e-10;1!CL:0000473;5.04e-07;39!CL:0000234;5.04e-07;39|ontology_enrichment_celltype_v019_2=CL:0000235,6.31e-37,6;CL:0000319,2.37e-10,1|ontology_enrichment_development_v019=UBERON:0000358;3.10e-10;1!UBERON:0005425;3.10e-10;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:4468;2.32e-18;2!DOID:3030;3.10e-10;1|ontology_enrichment_disease_v019_2=DOID:4468,4.89e-18,2;DOID:3030,2.37e-10,1|ontology_enrichment_uberon=UBERON:0001049!1.37e-26!57;UBERON:0005068!1.37e-26!57;UBERON:0006241!1.37e-26!57;UBERON:0007135!1.37e-26!57;UBERON:0002616!2.18e-21!59;UBERON:0001017!4.53e-21!82;UBERON:0000073!9.69e-21!94;UBERON:0001016!9.69e-21!94;UBERON:0002780!3.73e-20!41;UBERON:0001890!3.73e-20!41;UBERON:0006240!3.73e-20!41;UBERON:0005743!1.17e-19!86;UBERON:0003080!1.56e-19!42;UBERON:0002020!8.76e-19!34;UBERON:0003528!8.76e-19!34;UBERON:0000955!2.97e-18!69;UBERON:0006238!2.97e-18!69;UBERON:0003075!3.37e-17!86;UBERON:0007284!3.37e-17!86;UBERON:0001893!2.53e-16!34;UBERON:0002346!4.87e-16!90;UBERON:0001869!1.87e-15!32;UBERON:0002791!3.36e-15!33;UBERON:0007023!1.02e-14!115;UBERON:0002619!2.35e-14!22;UBERON:0003056!7.86e-13!61;UBERON:0000956!2.73e-12!25;UBERON:0000203!2.73e-12!25;UBERON:0001950!1.37e-11!20;UBERON:0002298!1.97e-09!8;UBERON:0004121!2.37e-09!169;UBERON:0000924!6.49e-09!173;UBERON:0006601!6.49e-09!173;UBERON:0002308!2.70e-08!9;UBERON:0000125!2.70e-08!9;UBERON:0003076!3.23e-08!15;UBERON:0003057!3.23e-08!15;UBERON:0002420!5.45e-08!9;UBERON:0007245!5.45e-08!9;UBERON:0010009!5.45e-08!9;UBERON:0010011!5.45e-08!9;UBERON:0000454!5.45e-08!9;UBERON:0000200!7.06e-08!6;UBERON:0006331!9.20e-08!3;UBERON:0002240!9.83e-08!3;UBERON:0000033!1.07e-07!123;UBERON:0000153!1.28e-07!129;UBERON:0007811!1.28e-07!129;UBERON:0000988!4.02e-07!3;UBERON:0000349!6.86e-07!5|ontology_enrichment_uberon_v019=UBERON:0000941;3.10e-10;1!UBERON:0001785;3.10e-10;1!UBERON:0002464;3.10e-10;1!UBERON:0004904;3.10e-10;1!UBERON:0001021;3.10e-10;1!UBERON:0002038;7.22e-10;1!UBERON:0009661;7.22e-10;1!UBERON:0002950;7.22e-10;1!UBERON:0001891;7.22e-10;1|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.59e-10,1;UBERON:0001785,2.59e-10,1;UBERON:0002464,2.59e-10,1;UBERON:0004904,2.59e-10,1;UBERON:0001021,2.59e-10,1;UBERON:0003902,2.59e-10,1;UBERON:0005425,2.59e-10,1;UBERON:0002038,6.91e-10,1;UBERON:0009661,6.91e-10,1;UBERON:0002950,6.91e-10,1;UBERON:0001891,6.91e-10,1;UBERON:0009616,6.91e-10,1;UBERON:0010286,6.91e-10,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23882548358041,0.28769239232215,0,0.236482229888585,0,0,0,0.188242339542605,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.261958150995425,0,0,0.97364218096405,0.696518949197069,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21595305478658,4.21207677250628,2.67536092119711,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17217447210047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50677127429638,8.43335757932127,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385076685522074,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0.537063524026827,0,0.0986434056369336,0,0,0,0.463840490809256,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,1.05499032264014,2.12202650606892,0,0,0,0,0,0,0,0,0,0,0.702793337176017,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70765727617876,1.66409607615766,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0.160317640503067,0,0,0,0,0,0,0.248505071130865,0,0,0,0,0,0.600420288709789,0.547621515567972,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412079291905832,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,6.38326229123505,0.157363764404994,0,2.15144807199414,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C455 | |||
|description=CAGE_peak_at_chr4:88898200..88898221,+ | |||
|id=chr4:88898200..88898221,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000235;8.14e-37;6!CL:0000319;3.10e-10;1!CL:0000473;5.04e-07;39!CL:0000234;5.04e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,6.31e-37,6;CL:0000319,2.37e-10,1 | |||
|ontology_enrichment_development_v019=UBERON:0000358;3.10e-10;1!UBERON:0005425;3.10e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4468;2.32e-18;2!DOID:3030;3.10e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,4.89e-18,2;DOID:3030,2.37e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.37e-26!57;UBERON:0005068!1.37e-26!57;UBERON:0006241!1.37e-26!57;UBERON:0007135!1.37e-26!57;UBERON:0002616!2.18e-21!59;UBERON:0001017!4.53e-21!82;UBERON:0000073!9.69e-21!94;UBERON:0001016!9.69e-21!94;UBERON:0002780!3.73e-20!41;UBERON:0001890!3.73e-20!41;UBERON:0006240!3.73e-20!41;UBERON:0005743!1.17e-19!86;UBERON:0003080!1.56e-19!42;UBERON:0002020!8.76e-19!34;UBERON:0003528!8.76e-19!34;UBERON:0000955!2.97e-18!69;UBERON:0006238!2.97e-18!69;UBERON:0003075!3.37e-17!86;UBERON:0007284!3.37e-17!86;UBERON:0001893!2.53e-16!34;UBERON:0002346!4.87e-16!90;UBERON:0001869!1.87e-15!32;UBERON:0002791!3.36e-15!33;UBERON:0007023!1.02e-14!115;UBERON:0002619!2.35e-14!22;UBERON:0003056!7.86e-13!61;UBERON:0000956!2.73e-12!25;UBERON:0000203!2.73e-12!25;UBERON:0001950!1.37e-11!20;UBERON:0002298!1.97e-09!8;UBERON:0004121!2.37e-09!169;UBERON:0000924!6.49e-09!173;UBERON:0006601!6.49e-09!173;UBERON:0002308!2.70e-08!9;UBERON:0000125!2.70e-08!9;UBERON:0003076!3.23e-08!15;UBERON:0003057!3.23e-08!15;UBERON:0002420!5.45e-08!9;UBERON:0007245!5.45e-08!9;UBERON:0010009!5.45e-08!9;UBERON:0010011!5.45e-08!9;UBERON:0000454!5.45e-08!9;UBERON:0000200!7.06e-08!6;UBERON:0006331!9.20e-08!3;UBERON:0002240!9.83e-08!3;UBERON:0000033!1.07e-07!123;UBERON:0000153!1.28e-07!129;UBERON:0007811!1.28e-07!129;UBERON:0000988!4.02e-07!3;UBERON:0000349!6.86e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.10e-10;1!UBERON:0001785;3.10e-10;1!UBERON:0002464;3.10e-10;1!UBERON:0004904;3.10e-10;1!UBERON:0001021;3.10e-10;1!UBERON:0002038;7.22e-10;1!UBERON:0009661;7.22e-10;1!UBERON:0002950;7.22e-10;1!UBERON:0001891;7.22e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.59e-10,1;UBERON:0001785,2.59e-10,1;UBERON:0002464,2.59e-10,1;UBERON:0004904,2.59e-10,1;UBERON:0001021,2.59e-10,1;UBERON:0003902,2.59e-10,1;UBERON:0005425,2.59e-10,1;UBERON:0002038,6.91e-10,1;UBERON:0009661,6.91e-10,1;UBERON:0002950,6.91e-10,1;UBERON:0001891,6.91e-10,1;UBERON:0009616,6.91e-10,1;UBERON:0010286,6.91e-10,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23882548358041,0.28769239232215,0,0.236482229888585,0,0,0,0.188242339542605,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.261958150995425,0,0,0.97364218096405,0.696518949197069,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21595305478658,4.21207677250628,2.67536092119711,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17217447210047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50677127429638,8.43335757932127,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385076685522074,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0.537063524026827,0,0.0986434056369336,0,0,0,0.463840490809256,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,1.05499032264014,2.12202650606892,0,0,0,0,0,0,0,0,0,0,0.702793337176017,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70765727617876,1.66409607615766,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0.160317640503067,0,0,0,0,0,0,0.248505071130865,0,0,0,0,0,0.600420288709789,0.547621515567972,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412079291905832,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,6.38326229123505,0.157363764404994,0,2.15144807199414,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.904980694530854,0.92562821219883,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732157589411779,0.1251909307065,0,0.776503360757966,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,1.28120759293973,0,0,0.138258436151731,0,0,0,0,2.94927490504463,0,0,0.106691729694141,0.344429959321631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0.478901577171454,0.615349092722265,0,0,0,2.85538840518309,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0.781078098613847,0.413373593002368,0.0634158101939068,0,0,0,0,0,0,0.336283722218824,0,0,0.177404740325278,0,0,0.135939465953663,0.197318320688547,0,0,0,0,0,0,1.07963795609311,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0.335566295393377,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,1.37415926980462,0.891139200981258,0.8453114551668,0,0,0,0,0,0,0,0,0,1.29005624836306,0,0,0,0,0,0,0,1.26166424835079,0,0,0.203977659483963,0,0.0918948995348449,0,0.151557396436479,0,3.31667775783512,0.620597975171371,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr4:88898200..88898221,+ | |||
}} |
Revision as of 12:14, 13 September 2013
Short description: | p@chr4:88898200..88898221, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:88898200..88898221, + |
Coexpression cluster: | C455_kidney_Macrophage_clear_endometrial_Monocytederived_large_spinal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 6.31e-37 | 6 |
mucus secreting cell | 2.37e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.59e-10 | 1 |
cranial nerve | 2.59e-10 | 1 |
nerve trunk | 2.59e-10 | 1 |
nerve connecting eye with brain | 2.59e-10 | 1 |
nerve | 2.59e-10 | 1 |
retinal neural layer | 2.59e-10 | 1 |
presumptive neural retina | 2.59e-10 | 1 |
substantia nigra | 6.91e-10 | 1 |
midbrain nucleus | 6.91e-10 | 1 |
regional part of midbrain | 6.91e-10 | 1 |
midbrain | 6.91e-10 | 1 |
presumptive midbrain | 6.91e-10 | 1 |
midbrain neural tube | 6.91e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 4.89e-18 | 2 |
mucinous adenocarcinoma | 2.37e-10 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.