FFCP PHASE1:Mm9::chr16:11984200..11984246,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72555|HGNC=|MCL_coexpression_id=1|UniProt=E9QN38,Q9CZN4|association_with_transcript=0bp_to_NM_001174086,NM_028277,uc007yfr.1,uc007yfs.2,uc007yft.2_5end|description=CAGE_peak_1_at_Shisa9_5end|id=chr16:11984200..11984246,+|ontology_enrichment_celltype=CL:0000117!1.37e-13!23;CL:0000337!1.37e-13!23;CL:0000540!1.31e-10!33;CL:0000047!1.31e-10!33;CL:0000031!1.31e-10!33;CL:0000404!1.31e-10!33;CL:0002319!1.45e-10!43;CL:0000221!3.77e-10!44;CL:0000133!3.77e-10!44;CL:0000055!5.17e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,7.50e-18,23;CL:0000337,7.50e-18,23;CL:0000540,4.70e-12,33;CL:0000047,4.70e-12,33;CL:0000031,4.70e-12,33;CL:0000404,4.70e-12,33;CL:0002319,1.26e-10,43;CL:0000221,3.85e-10,44;CL:0000133,3.85e-10,44;CL:0000393,9.67e-09,39;CL:0000211,9.67e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.31e-27!73;UBERON:0005743!1.31e-27!73;UBERON:0000073!2.16e-26!75;UBERON:0001016!2.16e-26!75;UBERON:0002346!1.54e-24!71;UBERON:0003075!1.54e-24!71;UBERON:0007284!1.54e-24!71;UBERON:0001049!3.80e-24!52;UBERON:0005068!3.80e-24!52;UBERON:0006241!3.80e-24!52;UBERON:0007135!3.80e-24!52;UBERON:0000955!3.36e-23!50;UBERON:0006238!3.36e-23!50;UBERON:0002616!2.01e-22!49;UBERON:0004121!7.41e-22!102;UBERON:0000924!7.41e-22!102;UBERON:0006601!7.41e-22!102;UBERON:0000033!1.33e-19!63;UBERON:0002020!1.99e-18!34;UBERON:0003080!4.62e-18!40;UBERON:0002780!2.42e-17!39;UBERON:0001890!2.42e-17!39;UBERON:0006240!2.42e-17!39;UBERON:0003056!4.69e-17!49;UBERON:0002791!2.42e-15!29;UBERON:0003528!2.42e-15!29;UBERON:0001893!2.42e-15!29;UBERON:0000025!7.76e-12!114;UBERON:0007811!7.55e-11!86;UBERON:0004111!1.04e-10!122;UBERON:0000956!1.78e-10!21;UBERON:0001869!1.78e-10!21;UBERON:0000203!1.78e-10!21;UBERON:0000153!6.87e-10!94;UBERON:0000468!2.40e-09!333;UBERON:0002619!1.42e-08!17;UBERON:0002021!1.82e-07!10;UBERON:0000411!1.82e-07!10;UBERON:0001950!1.82e-07!10;UBERON:0000922!2.40e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.54e-32,73;UBERON:0000073,8.90e-32,54;UBERON:0001016,2.44e-30,75;UBERON:0001049,1.13e-29,52;UBERON:0005068,1.13e-29,52;UBERON:0006241,1.13e-29,52;UBERON:0007135,1.13e-29,52;UBERON:0000955,1.23e-25,47;UBERON:0006238,1.23e-25,47;UBERON:0002346,1.44e-25,64;UBERON:0003075,1.44e-25,64;UBERON:0007284,1.44e-25,64;UBERON:0002616,1.24e-24,46;UBERON:0002020,1.79e-23,34;UBERON:0003080,2.29e-22,40;UBERON:0004121,1.39e-21,95;UBERON:0000924,1.39e-21,95;UBERON:0006601,1.39e-21,95;UBERON:0002780,2.08e-21,39;UBERON:0001890,2.08e-21,39;UBERON:0006240,2.08e-21,39;UBERON:0010371,7.22e-20,73;UBERON:0003528,2.59e-19,29;UBERON:0002791,2.59e-19,29;UBERON:0001893,2.59e-19,29;UBERON:0003056,1.23e-18,49;UBERON:0010314,9.17e-16,92;UBERON:0000956,8.80e-13,21;UBERON:0001869,8.80e-13,21;UBERON:0000203,8.80e-13,21;UBERON:0002619,3.15e-10,17;UBERON:0002021,1.46e-09,10;UBERON:0000411,1.46e-09,10;UBERON:0001950,1.46e-09,10;UBERON:0000025,8.86e-09,114;UBERON:0004111,6.68e-08,122;UBERON:0002420,7.36e-08,8;UBERON:0007245,7.36e-08,8;UBERON:0010009,7.36e-08,8;UBERON:0010011,7.36e-08,8;UBERON:0000454,7.36e-08,8;UBERON:0003076,1.11e-07,12;UBERON:0003057,1.11e-07,12|phase1_expression=0.640595388419176,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0.171200729931206,0,0,0.202475267389826,0,0.157731082679119,0,0,2.89147186513637,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,3.05235218932625,0.659058548203415,0.194429899074283,0.55994568650145,5.75010257459886,0,0,0,0,0,0,10.7227724255587,12.6957835025288,13.9442908771359,0.338844532069132,0,0,0,0,2.69640099466564,10.373894243682,4.45865332926454,6.34527910158946,5.04779907243317,16.5677570954206,15.4607978666129,4.16468717330844,3.25874601462004,2.75765635983006,20.9220173898839,20.8130361078856,17.050325191443,18.9916254331479,19.7613310181205,20.8365348222704,8.93385596804419,19.1339287410771,13.4462458043593,20.9186295686304,18.9354335462807,11.9295645328192,0.075726193333184,0.151143120213571,5.50742528533188,0.860423876981386,0,0.539703191637817,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0.517875767294343,1.63286352971307,1.21439728736295,4.56698217468212,1.61430848079241,1.65794904607885,1.99900802130698,0.376999773989026,0,0.86759614151947,0,0,0,0,0,5.85561594023094,3.97948742945565,0,0,0,0,24.4158742229861,44.8350590762254,12.3141265070607,19.1206752211504,19.4343747571051,22.2333207678729,27.418773458451,1.62942982160506,0.248813941220186,2.27450482590307,1.89397670297827,0.130120442962704,0.229902104433473,0.720248519221397,1.9591626318643,0.748401490664606,0.768682321709099,0.374806898238915,3.3631438196072,0,0.567318240503458,0.351902248327898,0.657587197282725,2.22437799380478,0.348252166522167,0,1.19420560091096,0,0,0,0.828503090142008,0.938104239924385,0.540186184383045,0.710234206755631,0.196764231747404,0.771335564436891,0.232533944750408,0.536546802799238,0.116765342367169,0,0,0,0.146199987425332,0,0,23.7627641877464,9.05560588937703,0.330418782983798,0,0.853153002140936,1.39342003116263,0.515469845288373,1.00841762311671,0,0,0.474529061544512,0.494096864172033,0,0.198956472041151,0.38992817423824,0,0.216138049874694,0.398282546508734,0.189667900953082,0.799739588268102,1.1270773567308,0.203651327845314,0.193952487167626,0.0701358198903186,0.126473074248515,0.147610147979602,0,0,0,0.83422552858047,1.17935397067922,0.449724224769707,0.405720242777006,0.72353147925725,0.25462585178142,0,0.486405680325106,0.549122826376163,2.87536413054709,0.372140947668503,0.624075346229121,0.252578877947112,0.179397413521912,0.482443521363367,0.554259570499814,6.63219941196697,2.77040459951444,1.52770577197669,1.64283173801951,1.84256883185997,0.714130922658041,0.780534591431195,0.945810864637146,0.8858587585951,0.478364305972461,0.491589944147214,0.863424909329478,0.289298117163023,0,0,0,0,9.15138362930414,5.97779601620236,0,0,2.2085575359138,1.17131623288992,0.646270193198397,0,0.445597348164788,0,0.404810701674894,0.876767573733936,1.58115111178609,38.5585579706168,0.283880170416537,1.95872164033981,1.14020871547503,0.164970122972535,1.32745138339963,0.485561272309963,0.302323556964751,0.377210159511796,0.295301892880773,0.922305443831782,0.775284879504663,0.727067458955011,0.356497378384721,0,0,0,1.70219802876894,1.08036656418786,0.646793418913773,1.50035924522115,2.12808280370728,2.31879462882692,1.81003922662333,1.2178597964584,0.704015124191131,0.42366414172764,0.441056796109924,0.32977250588296,0.322928853391811,0.663442174209714,0.238744688006273,0.164140899745061,0.582961673259701,6.86073617438886,0,1.23832120777933,0.555583582109135,0,0,0,0,0,0,0,1.58167996790568,0.813277868507395,0.648032044930808,0.836353184057875,0,0.404593039154462,0.330613822901344,0,0,0,0,0.448549638131936,0.330916980914195,0.777804753376191,0.774958940866387,1.01373675294467,0.352071715937262,0.781226309063701,0.209718688851422,0,0,0,1.62180172232131,1.33524244314275,0.129920822977795,0.716106782669926,0.596044064343795,0.480781798079875,0.295379054349154,0.302899349844443,0.0762068066549998,0.100826185136841,0.0974578807397524,0.288635524920988,0.233753804363138,0,0,0,0,1.35232715822533,0.750729901804728,0,0,2.00628841614145,34.4498623996411,21.1749608793301,24.0616115644547,13.748254587495,16.4419804744954,17.3740596399631,18.9006300064906,14.4102785031751,15.8599843144472,15.5328093525546,0.103787347584177,0.798049746802062,1.87806966329548,2.43106717068294,0.628839487883947,2.5738091183002,3.77819437262746,5.15087643097235,5.45562656306086,1.76888048234658,4.56262739802432,1.69763707247469,2.62196220915671,3.26528277264833,2.41228969613576,3.33405583898152,2.89710814862139,1.92909220463705,1.64834360321323,2.64958056241915,2.40008476669791,3.37204031702741,2.38436189947321,3.19762116591123,3.48204707536723,2.79228206042532,2.56099162021882,2.36762740294059,2.71608227691724,3.36685362994643,2.72860541685601,2.9551344712669,2.04615521584845,1.70430525304563,3.08650577569826,7.49431733813838,2.33931608445408,3.22306581072447,0.191288332068843,0.661774257358546,0.231867835620421|short_description=p1@Shisa9}} | ||
|EntrezGene=72555 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=E9QN38,Q9CZN4 | |||
|association_with_transcript=0bp_to_NM_001174086,NM_028277,uc007yfr.1,uc007yfs.2,uc007yft.2_5end | |||
|description=CAGE_peak_1_at_Shisa9_5end | |||
|id=chr16:11984200..11984246,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.37e-13!23;CL:0000337!1.37e-13!23;CL:0000540!1.31e-10!33;CL:0000047!1.31e-10!33;CL:0000031!1.31e-10!33;CL:0000404!1.31e-10!33;CL:0002319!1.45e-10!43;CL:0000221!3.77e-10!44;CL:0000133!3.77e-10!44;CL:0000055!5.17e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.50e-18,23;CL:0000337,7.50e-18,23;CL:0000540,4.70e-12,33;CL:0000047,4.70e-12,33;CL:0000031,4.70e-12,33;CL:0000404,4.70e-12,33;CL:0002319,1.26e-10,43;CL:0000221,3.85e-10,44;CL:0000133,3.85e-10,44;CL:0000393,9.67e-09,39;CL:0000211,9.67e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.31e-27!73;UBERON:0005743!1.31e-27!73;UBERON:0000073!2.16e-26!75;UBERON:0001016!2.16e-26!75;UBERON:0002346!1.54e-24!71;UBERON:0003075!1.54e-24!71;UBERON:0007284!1.54e-24!71;UBERON:0001049!3.80e-24!52;UBERON:0005068!3.80e-24!52;UBERON:0006241!3.80e-24!52;UBERON:0007135!3.80e-24!52;UBERON:0000955!3.36e-23!50;UBERON:0006238!3.36e-23!50;UBERON:0002616!2.01e-22!49;UBERON:0004121!7.41e-22!102;UBERON:0000924!7.41e-22!102;UBERON:0006601!7.41e-22!102;UBERON:0000033!1.33e-19!63;UBERON:0002020!1.99e-18!34;UBERON:0003080!4.62e-18!40;UBERON:0002780!2.42e-17!39;UBERON:0001890!2.42e-17!39;UBERON:0006240!2.42e-17!39;UBERON:0003056!4.69e-17!49;UBERON:0002791!2.42e-15!29;UBERON:0003528!2.42e-15!29;UBERON:0001893!2.42e-15!29;UBERON:0000025!7.76e-12!114;UBERON:0007811!7.55e-11!86;UBERON:0004111!1.04e-10!122;UBERON:0000956!1.78e-10!21;UBERON:0001869!1.78e-10!21;UBERON:0000203!1.78e-10!21;UBERON:0000153!6.87e-10!94;UBERON:0000468!2.40e-09!333;UBERON:0002619!1.42e-08!17;UBERON:0002021!1.82e-07!10;UBERON:0000411!1.82e-07!10;UBERON:0001950!1.82e-07!10;UBERON:0000922!2.40e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.54e-32,73;UBERON:0000073,8.90e-32,54;UBERON:0001016,2.44e-30,75;UBERON:0001049,1.13e-29,52;UBERON:0005068,1.13e-29,52;UBERON:0006241,1.13e-29,52;UBERON:0007135,1.13e-29,52;UBERON:0000955,1.23e-25,47;UBERON:0006238,1.23e-25,47;UBERON:0002346,1.44e-25,64;UBERON:0003075,1.44e-25,64;UBERON:0007284,1.44e-25,64;UBERON:0002616,1.24e-24,46;UBERON:0002020,1.79e-23,34;UBERON:0003080,2.29e-22,40;UBERON:0004121,1.39e-21,95;UBERON:0000924,1.39e-21,95;UBERON:0006601,1.39e-21,95;UBERON:0002780,2.08e-21,39;UBERON:0001890,2.08e-21,39;UBERON:0006240,2.08e-21,39;UBERON:0010371,7.22e-20,73;UBERON:0003528,2.59e-19,29;UBERON:0002791,2.59e-19,29;UBERON:0001893,2.59e-19,29;UBERON:0003056,1.23e-18,49;UBERON:0010314,9.17e-16,92;UBERON:0000956,8.80e-13,21;UBERON:0001869,8.80e-13,21;UBERON:0000203,8.80e-13,21;UBERON:0002619,3.15e-10,17;UBERON:0002021,1.46e-09,10;UBERON:0000411,1.46e-09,10;UBERON:0001950,1.46e-09,10;UBERON:0000025,8.86e-09,114;UBERON:0004111,6.68e-08,122;UBERON:0002420,7.36e-08,8;UBERON:0007245,7.36e-08,8;UBERON:0010009,7.36e-08,8;UBERON:0010011,7.36e-08,8;UBERON:0000454,7.36e-08,8;UBERON:0003076,1.11e-07,12;UBERON:0003057,1.11e-07,12 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0.171200729931206,0,0,0.202475267389826,0,0.157731082679119,0,0,2.89147186513637,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,3.05235218932625,0.659058548203415,0.194429899074283,0.55994568650145,5.75010257459886,0,0,0,0,0,0,10.7227724255587,12.6957835025288,13.9442908771359,0.338844532069132,0,0,0,0,2.69640099466564,10.373894243682,4.45865332926454,6.34527910158946,5.04779907243317,16.5677570954206,15.4607978666129,4.16468717330844,3.25874601462004,2.75765635983006,20.9220173898839,20.8130361078856,17.050325191443,18.9916254331479,19.7613310181205,20.8365348222704,8.93385596804419,19.1339287410771,13.4462458043593,20.9186295686304,18.9354335462807,11.9295645328192,0.075726193333184,0.151143120213571,5.50742528533188,0.860423876981386,0,0.539703191637817,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0.517875767294343,1.63286352971307,1.21439728736295,4.56698217468212,1.61430848079241,1.65794904607885,1.99900802130698,0.376999773989026,0,0.86759614151947,0,0,0,0,0,5.85561594023094,3.97948742945565,0,0,0,0,24.4158742229861,44.8350590762254,12.3141265070607,19.1206752211504,19.4343747571051,22.2333207678729,27.418773458451,1.62942982160506,0.248813941220186,2.27450482590307,1.89397670297827,0.130120442962704,0.229902104433473,0.720248519221397,1.9591626318643,0.748401490664606,0.768682321709099,0.374806898238915,3.3631438196072,0,0.567318240503458,0.351902248327898,0.657587197282725,2.22437799380478,0.348252166522167,0,1.19420560091096,0,0,0,0.828503090142008,0.938104239924385,0.540186184383045,0.710234206755631,0.196764231747404,0.771335564436891,0.232533944750408,0.536546802799238,0.116765342367169,0,0,0,0.146199987425332,0,0,23.7627641877464,9.05560588937703,0.330418782983798,0,0.853153002140936,1.39342003116263,0.515469845288373,1.00841762311671,0,0,0.474529061544512,0.494096864172033,0,0.198956472041151,0.38992817423824,0,0.216138049874694,0.398282546508734,0.189667900953082,0.799739588268102,1.1270773567308,0.203651327845314,0.193952487167626,0.0701358198903186,0.126473074248515,0.147610147979602,0,0,0,0.83422552858047,1.17935397067922,0.449724224769707,0.405720242777006,0.72353147925725,0.25462585178142,0,0.486405680325106,0.549122826376163,2.87536413054709,0.372140947668503,0.624075346229121,0.252578877947112,0.179397413521912,0.482443521363367,0.554259570499814,6.63219941196697,2.77040459951444,1.52770577197669,1.64283173801951,1.84256883185997,0.714130922658041,0.780534591431195,0.945810864637146,0.8858587585951,0.478364305972461,0.491589944147214,0.863424909329478,0.289298117163023,0,0,0,0,9.15138362930414,5.97779601620236,0,0,2.2085575359138,1.17131623288992,0.646270193198397,0,0.445597348164788,0,0.404810701674894,0.876767573733936,1.58115111178609,38.5585579706168,0.283880170416537,1.95872164033981,1.14020871547503,0.164970122972535,1.32745138339963,0.485561272309963,0.302323556964751,0.377210159511796,0.295301892880773,0.922305443831782,0.775284879504663,0.727067458955011,0.356497378384721,0,0,0,1.70219802876894,1.08036656418786,0.646793418913773,1.50035924522115,2.12808280370728,2.31879462882692,1.81003922662333,1.2178597964584,0.704015124191131,0.42366414172764,0.441056796109924,0.32977250588296,0.322928853391811,0.663442174209714,0.238744688006273,0.164140899745061,0.582961673259701,6.86073617438886,0,1.23832120777933,0.555583582109135,0,0,0,0,0,0,0,1.58167996790568,0.813277868507395,0.648032044930808,0.836353184057875,0,0.404593039154462,0.330613822901344,0,0,0,0,0.448549638131936,0.330916980914195,0.777804753376191,0.774958940866387,1.01373675294467,0.352071715937262,0.781226309063701,0.209718688851422,0,0,0,1.62180172232131,1.33524244314275,0.129920822977795,0.716106782669926,0.596044064343795,0.480781798079875,0.295379054349154,0.302899349844443,0.0762068066549998,0.100826185136841,0.0974578807397524,0.288635524920988,0.233753804363138,0,0,0,0,1.35232715822533,0.750729901804728,0,0,2.00628841614145,34.4498623996411,21.1749608793301,24.0616115644547,13.748254587495,16.4419804744954,17.3740596399631,18.9006300064906,14.4102785031751,15.8599843144472,15.5328093525546,0.103787347584177,0.798049746802062,1.87806966329548,2.43106717068294,0.628839487883947,2.5738091183002,3.77819437262746,5.15087643097235,5.45562656306086,1.76888048234658,4.56262739802432,1.69763707247469,2.62196220915671,3.26528277264833,2.41228969613576,3.33405583898152,2.89710814862139,1.92909220463705,1.64834360321323,2.64958056241915,2.40008476669791,3.37204031702741,2.38436189947321,3.19762116591123,3.48204707536723,2.79228206042532,2.56099162021882,2.36762740294059,2.71608227691724,3.36685362994643,2.72860541685601,2.9551344712669,2.04615521584845,1.70430525304563,3.08650577569826,7.49431733813838,2.33931608445408,3.22306581072447,0.191288332068843,0.661774257358546,0.231867835620421 | |||
|short_description=p1@Shisa9 | |||
}} |
Revision as of 11:58, 13 September 2013
Short description: | p1@Shisa9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Shisa9_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_NM_001174086, NM_028277, uc007yfr.1, uc007yfs.2, uc007yft.2_5end |
EntrezGene: | Shisa9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.50e-18 | 23 |
neuroblast (sensu Vertebrata) | 7.50e-18 | 23 |
neuron | 4.70e-12 | 33 |
neuronal stem cell | 4.70e-12 | 33 |
neuroblast | 4.70e-12 | 33 |
electrically signaling cell | 4.70e-12 | 33 |
neural cell | 1.26e-10 | 43 |
ectodermal cell | 3.85e-10 | 44 |
neurectodermal cell | 3.85e-10 | 44 |
electrically responsive cell | 9.67e-09 | 39 |
electrically active cell | 9.67e-09 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.