FFCP PHASE1:Mm9::chr15:98783959..98783964,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22142|HGNC=|MCL_coexpression_id=22|UniProt=|association_with_transcript=8bp_to_ENSMUST00000134214_5end|description=CAGE_peak_5_at_Tuba1a_5end|id=chr15:98783959..98783964,-|ontology_enrichment_celltype=CL:0000393!2.33e-13!39;CL:0000211!2.33e-13!39;CL:0000540!3.82e-13!33;CL:0000047!3.82e-13!33;CL:0000031!3.82e-13!33;CL:0000404!3.82e-13!33;CL:0000221!9.59e-13!44;CL:0000133!9.59e-13!44;CL:0002319!1.57e-12!43;CL:0000055!3.99e-12!50;CL:0000117!5.17e-12!23;CL:0000337!5.17e-12!23|ontology_enrichment_celltype_v019_2=CL:0000393,2.58e-15,39;CL:0000211,2.58e-15,39;CL:0000540,3.15e-15,33;CL:0000047,3.15e-15,33;CL:0000031,3.15e-15,33;CL:0000404,3.15e-15,33;CL:0000221,4.44e-15,44;CL:0000133,4.44e-15,44;CL:0002319,7.77e-15,43;CL:0000117,6.40e-14,23;CL:0000337,6.40e-14,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.74e-25!75;UBERON:0001016!1.74e-25!75;UBERON:0001017!7.28e-25!73;UBERON:0005743!7.28e-25!73;UBERON:0004121!1.07e-23!102;UBERON:0000924!1.07e-23!102;UBERON:0006601!1.07e-23!102;UBERON:0002346!1.47e-19!71;UBERON:0003075!1.47e-19!71;UBERON:0007284!1.47e-19!71;UBERON:0000033!6.62e-19!63;UBERON:0001049!1.23e-18!52;UBERON:0005068!1.23e-18!52;UBERON:0006241!1.23e-18!52;UBERON:0007135!1.23e-18!52;UBERON:0000955!3.88e-17!50;UBERON:0006238!3.88e-17!50;UBERON:0002616!9.92e-17!49;UBERON:0003056!8.50e-16!49;UBERON:0002020!6.76e-14!34;UBERON:0003080!7.55e-14!40;UBERON:0002780!2.88e-13!39;UBERON:0001890!2.88e-13!39;UBERON:0006240!2.88e-13!39;UBERON:0000153!1.36e-11!94;UBERON:0002791!3.08e-11!29;UBERON:0003528!3.08e-11!29;UBERON:0001893!3.08e-11!29;UBERON:0007811!1.08e-10!86;UBERON:0000956!3.74e-07!21;UBERON:0001869!3.74e-07!21;UBERON:0000203!3.74e-07!21;UBERON:0000025!5.01e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.39e-29,75;UBERON:0004121,6.97e-29,95;UBERON:0000924,6.97e-29,95;UBERON:0006601,6.97e-29,95;UBERON:0001017,7.17e-29,73;UBERON:0002346,7.21e-25,64;UBERON:0003075,7.21e-25,64;UBERON:0007284,7.21e-25,64;UBERON:0010371,4.39e-23,73;UBERON:0000073,1.49e-22,54;UBERON:0001049,1.67e-21,52;UBERON:0005068,1.67e-21,52;UBERON:0006241,1.67e-21,52;UBERON:0007135,1.67e-21,52;UBERON:0000955,3.77e-18,47;UBERON:0006238,3.77e-18,47;UBERON:0003056,6.90e-18,49;UBERON:0002616,1.08e-17,46;UBERON:0010314,2.47e-17,92;UBERON:0002020,3.63e-16,34;UBERON:0003080,6.47e-16,40;UBERON:0002780,3.00e-15,39;UBERON:0001890,3.00e-15,39;UBERON:0006240,3.00e-15,39;UBERON:0003528,4.14e-13,29;UBERON:0002791,4.14e-13,29;UBERON:0001893,4.14e-13,29;UBERON:0000956,2.11e-08,21;UBERON:0001869,2.11e-08,21;UBERON:0000203,2.11e-08,21;UBERON:0000025,8.57e-08,114;UBERON:0004111,7.43e-07,122|phase1_expression=1.60148847104794,0,0,0,0,0.33575854382378,0,0.903863264091034,1.12630977721333,0.70219357896598,0,0,1.19840510951844,1.22388563386596,0,0.202475267389826,0,0.315462165358238,0.137114433605739,0,1.44573593256819,0.595745707205312,0.783599367416806,0.319984845586813,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0.418531630736908,0.7813353445238,0.523523743973798,0.588231488031014,0,1.94204141212461,1.88845226963366,2.73717714292689,2.0190142737785,2.34717403304412,0.218025156380447,1.75748946187577,0.194429899074283,0.139986421625363,1.43752564364972,0.335565212115473,0,0.336093799142464,1.54355661621568,1.71920063963254,0.515672092277442,9.1042407386819,12.6957835025288,7.60597684207415,3.04960078862219,0,0,0.988866362566974,0,2.39680088414724,8.4528027170742,5.91030790158323,4.45519596494579,6.09942387919008,6.56997264128748,5.96345060569357,6.61450315760752,3.92966431174769,0,2.20231761998777,3.83062014255563,4.76180253094355,7.91317726381163,7.593474419,6.25096044668112,3.90856198601933,3.37657566019008,2.29197371665215,4.41942878210502,2.13557521198654,6.33758115806022,1.51452386666368,3.77857800533928,0.579728977403356,0,0,0,0,0,0.421333260395256,2.55645483867087,2.33807404142582,0.70667914902068,1.97180787687353,0,0,0,0,0.253359865475099,0.505524445014783,0.22836775943812,0.517875767294343,0.148442139064825,1.56136794089522,1.52232739156071,0.691846491768175,0.753613202763113,1.17588707135705,0.376999773989026,0,0.86759614151947,1.76922110389975,1.7794353494215,0.220841518460394,0.484875253135222,0,2.34224637609238,2.51336048176146,0.255457055208591,0.838705871541442,0,1.01656181658452,5.54225365797844,2.74500361691176,11.0575829859321,4.34560800480691,4.60287823194595,4.1557608911912,3.73154905055843,1.52759045775474,0.497627882440372,0.252722758433675,0.631325567659422,2.99277018814219,1.37941262660084,2.34080768746954,1.65775299619287,4.08218994907967,3.07472928683639,2.71735001223214,2.06962696591213,2.58681591519411,1.70195472151037,0.879755620819744,1.53437012699302,1.39023624612799,3.1342694986995,2.05782136407943,0.995171334092466,0,0,0,0.828503090142008,3.28336483973535,1.2604344302271,1.65721314909647,1.77087808572663,1.3884040159864,0.930135779001631,0.268273401399619,0.934122738937356,1.48103864922132,0.656669856316381,0.405344047729279,0.584799949701329,0.87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| ||
|EntrezGene=22142 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt= | |||
|association_with_transcript=8bp_to_ENSMUST00000134214_5end | |||
|description=CAGE_peak_5_at_Tuba1a_5end | |||
|id=chr15:98783959..98783964,- | |||
|ontology_enrichment_celltype=CL:0000393!2.33e-13!39;CL:0000211!2.33e-13!39;CL:0000540!3.82e-13!33;CL:0000047!3.82e-13!33;CL:0000031!3.82e-13!33;CL:0000404!3.82e-13!33;CL:0000221!9.59e-13!44;CL:0000133!9.59e-13!44;CL:0002319!1.57e-12!43;CL:0000055!3.99e-12!50;CL:0000117!5.17e-12!23;CL:0000337!5.17e-12!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.58e-15,39;CL:0000211,2.58e-15,39;CL:0000540,3.15e-15,33;CL:0000047,3.15e-15,33;CL:0000031,3.15e-15,33;CL:0000404,3.15e-15,33;CL:0000221,4.44e-15,44;CL:0000133,4.44e-15,44;CL:0002319,7.77e-15,43;CL:0000117,6.40e-14,23;CL:0000337,6.40e-14,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.74e-25!75;UBERON:0001016!1.74e-25!75;UBERON:0001017!7.28e-25!73;UBERON:0005743!7.28e-25!73;UBERON:0004121!1.07e-23!102;UBERON:0000924!1.07e-23!102;UBERON:0006601!1.07e-23!102;UBERON:0002346!1.47e-19!71;UBERON:0003075!1.47e-19!71;UBERON:0007284!1.47e-19!71;UBERON:0000033!6.62e-19!63;UBERON:0001049!1.23e-18!52;UBERON:0005068!1.23e-18!52;UBERON:0006241!1.23e-18!52;UBERON:0007135!1.23e-18!52;UBERON:0000955!3.88e-17!50;UBERON:0006238!3.88e-17!50;UBERON:0002616!9.92e-17!49;UBERON:0003056!8.50e-16!49;UBERON:0002020!6.76e-14!34;UBERON:0003080!7.55e-14!40;UBERON:0002780!2.88e-13!39;UBERON:0001890!2.88e-13!39;UBERON:0006240!2.88e-13!39;UBERON:0000153!1.36e-11!94;UBERON:0002791!3.08e-11!29;UBERON:0003528!3.08e-11!29;UBERON:0001893!3.08e-11!29;UBERON:0007811!1.08e-10!86;UBERON:0000956!3.74e-07!21;UBERON:0001869!3.74e-07!21;UBERON:0000203!3.74e-07!21;UBERON:0000025!5.01e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.39e-29,75;UBERON:0004121,6.97e-29,95;UBERON:0000924,6.97e-29,95;UBERON:0006601,6.97e-29,95;UBERON:0001017,7.17e-29,73;UBERON:0002346,7.21e-25,64;UBERON:0003075,7.21e-25,64;UBERON:0007284,7.21e-25,64;UBERON:0010371,4.39e-23,73;UBERON:0000073,1.49e-22,54;UBERON:0001049,1.67e-21,52;UBERON:0005068,1.67e-21,52;UBERON:0006241,1.67e-21,52;UBERON:0007135,1.67e-21,52;UBERON:0000955,3.77e-18,47;UBERON:0006238,3.77e-18,47;UBERON:0003056,6.90e-18,49;UBERON:0002616,1.08e-17,46;UBERON:0010314,2.47e-17,92;UBERON:0002020,3.63e-16,34;UBERON:0003080,6.47e-16,40;UBERON:0002780,3.00e-15,39;UBERON:0001890,3.00e-15,39;UBERON:0006240,3.00e-15,39;UBERON:0003528,4.14e-13,29;UBERON:0002791,4.14e-13,29;UBERON:0001893,4.14e-13,29;UBERON:0000956,2.11e-08,21;UBERON:0001869,2.11e-08,21;UBERON:0000203,2.11e-08,21;UBERON:0000025,8.57e-08,114;UBERON:0004111,7.43e-07,122 | |||
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| |||
|short_description=p5@Tuba1a | |||
}} |
Revision as of 11:51, 13 September 2013
Short description: | p5@Tuba1a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Tuba1a_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 8bp_to_ENSMUST00000134214_5end |
EntrezGene: | Tuba1a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.58e-15 | 39 |
electrically active cell | 2.58e-15 | 39 |
neuron | 3.15e-15 | 33 |
neuronal stem cell | 3.15e-15 | 33 |
neuroblast | 3.15e-15 | 33 |
electrically signaling cell | 3.15e-15 | 33 |
ectodermal cell | 4.44e-15 | 44 |
neurectodermal cell | 4.44e-15 | 44 |
neural cell | 7.77e-15 | 43 |
CNS neuron (sensu Vertebrata) | 6.40e-14 | 23 |
neuroblast (sensu Vertebrata) | 6.40e-14 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.39e-29 | 75 |
ectoderm-derived structure | 6.97e-29 | 95 |
ectoderm | 6.97e-29 | 95 |
presumptive ectoderm | 6.97e-29 | 95 |
central nervous system | 7.17e-29 | 73 |
neurectoderm | 7.21e-25 | 64 |
neural plate | 7.21e-25 | 64 |
presumptive neural plate | 7.21e-25 | 64 |
ecto-epithelium | 4.39e-23 | 73 |
regional part of nervous system | 1.49e-22 | 54 |
neural tube | 1.67e-21 | 52 |
neural rod | 1.67e-21 | 52 |
future spinal cord | 1.67e-21 | 52 |
neural keel | 1.67e-21 | 52 |
brain | 3.77e-18 | 47 |
future brain | 3.77e-18 | 47 |
pre-chordal neural plate | 6.90e-18 | 49 |
regional part of brain | 1.08e-17 | 46 |
structure with developmental contribution from neural crest | 2.47e-17 | 92 |
gray matter | 3.63e-16 | 34 |
anterior neural tube | 6.47e-16 | 40 |
regional part of forebrain | 3.00e-15 | 39 |
forebrain | 3.00e-15 | 39 |
future forebrain | 3.00e-15 | 39 |
brain grey matter | 4.14e-13 | 29 |
regional part of telencephalon | 4.14e-13 | 29 |
telencephalon | 4.14e-13 | 29 |
cerebral cortex | 2.11e-08 | 21 |
cerebral hemisphere | 2.11e-08 | 21 |
pallium | 2.11e-08 | 21 |
tube | 8.57e-08 | 114 |
anatomical conduit | 7.43e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.