FFCP PHASE1:Hg19::chr4:5754385..5754405,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2121|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3497|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000514919_5end|description=CAGE_peak_3_at_EVC_5end|id=chr4:5754385..5754405,+|ontology_enrichment_celltype=CL:0000055!4.16e-19!180;CL:0000680!1.66e-14!57;CL:0000056!1.66e-14!57;CL:0000355!1.66e-14!57;CL:0002371!1.97e-14!591;CL:0000144!8.80e-13!625;CL:0000393!1.98e-12!60;CL:0000211!1.98e-12!60;CL:0000183!6.96e-12!59;CL:0000187!1.00e-11!54;CL:0000222!5.46e-11!119;CL:0000220!2.89e-10!246;CL:0000548!3.85e-10!679;CL:0000004!3.85e-10!679;CL:0000255!3.85e-10!679;CL:0002321!4.96e-10!248;CL:0000012!6.40e-10!682;CL:0000188!2.91e-09!9;CL:0002551!4.64e-09!6;CL:0000057!4.96e-09!75;CL:0000048!2.75e-08!430;CL:0000723!2.76e-08!436;CL:0000034!5.08e-08!444;CL:0000003!9.58e-08!722;CL:0000515!1.67e-07!4;CL:1000507!4.64e-07!12;CL:1000494!4.64e-07!12;CL:0002494!8.93e-07!16|ontology_enrichment_celltype_v019=CL:0000680;7.26e-19;7!CL:0000056;4.42e-16;4!CL:0002551;7.56e-15;6!CL:0000515;1.67e-12;3!CL:0000188;1.43e-09;9!CL:0000569;1.65e-08;4!CL:0002363;2.22e-08;2!CL:0002602;8.58e-08;2!CL:0000723;8.76e-07;61|ontology_enrichment_celltype_v019_2=CL:0000515,4.32e-16,4;CL:0002551,2.13e-15,6;CL:0000680,5.49e-10,58;CL:0000056,5.49e-10,58;CL:0000355,5.49e-10,58;CL:0000188,3.16e-09,9;CL:0000569,9.10e-09,4;CL:0000011,9.10e-09,4;CL:0002363,2.78e-08,2;CL:0000008,2.78e-08,2;CL:0002602,4.75e-08,2;CL:0000723,6.99e-07,433|ontology_enrichment_development_v019=CL:0000515;4.42e-16;4!CL:0000011;1.65e-08;4!CL:0000008;2.22e-08;2!CL:0000355;1.98e-07;58|ontology_enrichment_disease=DOID:2394!7.31e-08!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!7.78e-21!83;UBERON:0002329!7.78e-21!83;UBERON:0003077!7.78e-21!83;UBERON:0003059!7.78e-21!83;UBERON:0007282!7.78e-21!83;UBERON:0009618!7.78e-21!83;UBERON:0007285!7.78e-21!83;UBERON:0004290!1.92e-19!70;UBERON:0000486!7.82e-16!82;UBERON:0005256!2.06e-14!143;UBERON:0000481!3.94e-13!347;UBERON:0001134!6.22e-13!61;UBERON:0002036!6.22e-13!61;UBERON:0003082!6.22e-13!61;UBERON:0002385!3.16e-12!63;UBERON:0001015!3.16e-12!63;UBERON:0000383!3.16e-12!63;UBERON:0000019!3.23e-12!19;UBERON:0000047!3.23e-12!19;UBERON:0004088!3.23e-12!19;UBERON:0003072!3.23e-12!19;UBERON:0003071!3.23e-12!19;UBERON:0004128!3.23e-12!19;UBERON:0001456!3.49e-12!21;UBERON:0000970!2.16e-11!20;UBERON:0002104!1.20e-10!21;UBERON:0005085!2.04e-10!29;UBERON:0000119!2.42e-10!312;UBERON:0001444!4.48e-10!48;UBERON:0002067!4.52e-10!9;UBERON:0004016!4.52e-10!9;UBERON:0010083!4.52e-10!9;UBERON:0000483!1.05e-09!309;UBERON:0000020!2.31e-09!23;UBERON:0001801!3.15e-09!14;UBERON:0001032!8.36e-09!24;UBERON:0004456!8.36e-09!24;UBERON:0007625!4.07e-08!11;UBERON:0003104!4.62e-08!238;UBERON:0009142!4.62e-08!238;UBERON:0000475!5.55e-08!365;UBERON:0002200!1.12e-07!11;UBERON:0006876!1.12e-07!11;UBERON:0002203!2.28e-07!6;UBERON:0001768!2.28e-07!6;UBERON:0009773!4.64e-07!12;UBERON:0001231!4.64e-07!12;UBERON:0004810!4.64e-07!12;UBERON:0000992!9.12e-07!13;UBERON:0004535!9.35e-07!110;UBERON:0002118!9.88e-07!5;UBERON:0004532!9.88e-07!5|ontology_enrichment_uberon_v019=UBERON:0002067;2.09e-18;9!UBERON:0002385;8.58e-14;31!UBERON:0001015;8.58e-14;31!UBERON:0000383;8.58e-14;31!UBERON:0001134;2.17e-13;16!UBERON:0002036;2.17e-13;16!UBERON:0003566;2.22e-08;2!UBERON:0001777;2.22e-08;2!UBERON:0006444;8.58e-08;2!UBERON:0001995;8.58e-08;2!UBERON:0004715;8.58e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0002067,5.29e-19,9;UBERON:0004016,5.29e-19,9;UBERON:0010083,5.29e-19,9;UBERON:0002329,1.94e-18,71;UBERON:0003059,1.94e-18,71;UBERON:0007282,1.94e-18,71;UBERON:0004290,1.94e-18,71;UBERON:0009618,1.94e-18,71;UBERON:0003077,4.17e-18,72;UBERON:0007285,4.17e-18,72;UBERON:0007524,8.80e-18,73;UBERON:0007503,2.74e-16,78;UBERON:0000486,5.60e-15,83;UBERON:0005256,1.45e-09,122;UBERON:0003104,2.71e-09,160;UBERON:0009142,2.71e-09,160;UBERON:0001134,3.96e-09,62;UBERON:0002036,3.96e-09,62;UBERON:0003082,3.96e-09,62;UBERON:0002385,9.69e-09,64;UBERON:0001015,9.69e-09,64;UBERON:0000383,9.69e-09,64;UBERON:0003566,2.78e-08,2;UBERON:0001777,2.78e-08,2;UBERON:0006444,4.75e-08,2;UBERON:0001995,4.75e-08,2;UBERON:0004715,4.75e-08,2;UBERON:0000490,5.67e-07,148|phase1_expression=0,0,0,0,0,0,0,1.89515962028049,0,0,0,0,0,1.48519623552056,1.65698687863958,1.34465029290355,1.80808358407193,0,1.46379839637152,0.123121058076788,0,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0.567208902984407,0.443458794925128,0.263504357079378,0,0.728590576585084,0,0,0,0,0,0,0,0,0.860234595106124,0.347140501607594,0,0,0,0,0.258416759169329,0.71153252537342,0.66944122552934,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,1.19168262731897,0,0.709336764396714,0,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2121 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3497 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000514919_5end | |||
|description=CAGE_peak_3_at_EVC_5end | |||
|id=chr4:5754385..5754405,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.16e-19!180;CL:0000680!1.66e-14!57;CL:0000056!1.66e-14!57;CL:0000355!1.66e-14!57;CL:0002371!1.97e-14!591;CL:0000144!8.80e-13!625;CL:0000393!1.98e-12!60;CL:0000211!1.98e-12!60;CL:0000183!6.96e-12!59;CL:0000187!1.00e-11!54;CL:0000222!5.46e-11!119;CL:0000220!2.89e-10!246;CL:0000548!3.85e-10!679;CL:0000004!3.85e-10!679;CL:0000255!3.85e-10!679;CL:0002321!4.96e-10!248;CL:0000012!6.40e-10!682;CL:0000188!2.91e-09!9;CL:0002551!4.64e-09!6;CL:0000057!4.96e-09!75;CL:0000048!2.75e-08!430;CL:0000723!2.76e-08!436;CL:0000034!5.08e-08!444;CL:0000003!9.58e-08!722;CL:0000515!1.67e-07!4;CL:1000507!4.64e-07!12;CL:1000494!4.64e-07!12;CL:0002494!8.93e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000680;7.26e-19;7!CL:0000056;4.42e-16;4!CL:0002551;7.56e-15;6!CL:0000515;1.67e-12;3!CL:0000188;1.43e-09;9!CL:0000569;1.65e-08;4!CL:0002363;2.22e-08;2!CL:0002602;8.58e-08;2!CL:0000723;8.76e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000515,4.32e-16,4;CL:0002551,2.13e-15,6;CL:0000680,5.49e-10,58;CL:0000056,5.49e-10,58;CL:0000355,5.49e-10,58;CL:0000188,3.16e-09,9;CL:0000569,9.10e-09,4;CL:0000011,9.10e-09,4;CL:0002363,2.78e-08,2;CL:0000008,2.78e-08,2;CL:0002602,4.75e-08,2;CL:0000723,6.99e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000515;4.42e-16;4!CL:0000011;1.65e-08;4!CL:0000008;2.22e-08;2!CL:0000355;1.98e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!7.31e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!7.78e-21!83;UBERON:0002329!7.78e-21!83;UBERON:0003077!7.78e-21!83;UBERON:0003059!7.78e-21!83;UBERON:0007282!7.78e-21!83;UBERON:0009618!7.78e-21!83;UBERON:0007285!7.78e-21!83;UBERON:0004290!1.92e-19!70;UBERON:0000486!7.82e-16!82;UBERON:0005256!2.06e-14!143;UBERON:0000481!3.94e-13!347;UBERON:0001134!6.22e-13!61;UBERON:0002036!6.22e-13!61;UBERON:0003082!6.22e-13!61;UBERON:0002385!3.16e-12!63;UBERON:0001015!3.16e-12!63;UBERON:0000383!3.16e-12!63;UBERON:0000019!3.23e-12!19;UBERON:0000047!3.23e-12!19;UBERON:0004088!3.23e-12!19;UBERON:0003072!3.23e-12!19;UBERON:0003071!3.23e-12!19;UBERON:0004128!3.23e-12!19;UBERON:0001456!3.49e-12!21;UBERON:0000970!2.16e-11!20;UBERON:0002104!1.20e-10!21;UBERON:0005085!2.04e-10!29;UBERON:0000119!2.42e-10!312;UBERON:0001444!4.48e-10!48;UBERON:0002067!4.52e-10!9;UBERON:0004016!4.52e-10!9;UBERON:0010083!4.52e-10!9;UBERON:0000483!1.05e-09!309;UBERON:0000020!2.31e-09!23;UBERON:0001801!3.15e-09!14;UBERON:0001032!8.36e-09!24;UBERON:0004456!8.36e-09!24;UBERON:0007625!4.07e-08!11;UBERON:0003104!4.62e-08!238;UBERON:0009142!4.62e-08!238;UBERON:0000475!5.55e-08!365;UBERON:0002200!1.12e-07!11;UBERON:0006876!1.12e-07!11;UBERON:0002203!2.28e-07!6;UBERON:0001768!2.28e-07!6;UBERON:0009773!4.64e-07!12;UBERON:0001231!4.64e-07!12;UBERON:0004810!4.64e-07!12;UBERON:0000992!9.12e-07!13;UBERON:0004535!9.35e-07!110;UBERON:0002118!9.88e-07!5;UBERON:0004532!9.88e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002067;2.09e-18;9!UBERON:0002385;8.58e-14;31!UBERON:0001015;8.58e-14;31!UBERON:0000383;8.58e-14;31!UBERON:0001134;2.17e-13;16!UBERON:0002036;2.17e-13;16!UBERON:0003566;2.22e-08;2!UBERON:0001777;2.22e-08;2!UBERON:0006444;8.58e-08;2!UBERON:0001995;8.58e-08;2!UBERON:0004715;8.58e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002067,5.29e-19,9;UBERON:0004016,5.29e-19,9;UBERON:0010083,5.29e-19,9;UBERON:0002329,1.94e-18,71;UBERON:0003059,1.94e-18,71;UBERON:0007282,1.94e-18,71;UBERON:0004290,1.94e-18,71;UBERON:0009618,1.94e-18,71;UBERON:0003077,4.17e-18,72;UBERON:0007285,4.17e-18,72;UBERON:0007524,8.80e-18,73;UBERON:0007503,2.74e-16,78;UBERON:0000486,5.60e-15,83;UBERON:0005256,1.45e-09,122;UBERON:0003104,2.71e-09,160;UBERON:0009142,2.71e-09,160;UBERON:0001134,3.96e-09,62;UBERON:0002036,3.96e-09,62;UBERON:0003082,3.96e-09,62;UBERON:0002385,9.69e-09,64;UBERON:0001015,9.69e-09,64;UBERON:0000383,9.69e-09,64;UBERON:0003566,2.78e-08,2;UBERON:0001777,2.78e-08,2;UBERON:0006444,4.75e-08,2;UBERON:0001995,4.75e-08,2;UBERON:0004715,4.75e-08,2;UBERON:0000490,5.67e-07,148 | |||
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|short_description=p3@EVC | |||
}} |
Revision as of 11:12, 13 September 2013
Short description: | p3@EVC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_EVC_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000514919_5end |
EntrezGene: | EVC |
HGNC: | 3497 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skeletal muscle myoblast | 4.32e-16 | 4 |
fibroblast of dermis | 2.13e-15 | 6 |
muscle precursor cell | 5.49e-10 | 58 |
myoblast | 5.49e-10 | 58 |
multi-potent skeletal muscle stem cell | 5.49e-10 | 58 |
cell of skeletal muscle | 3.16e-09 | 9 |
cardiac mesenchymal cell | 9.10e-09 | 4 |
migratory trunk neural crest cell | 9.10e-09 | 4 |
keratocyte | 2.78e-08 | 2 |
migratory cranial neural crest cell | 2.78e-08 | 2 |
annulus pulposus cell | 4.75e-08 | 2 |
somatic stem cell | 6.99e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
dermis | 5.29e-19 | 9 |
dermatome | 5.29e-19 | 9 |
future dermis | 5.29e-19 | 9 |
somite | 1.94e-18 | 71 |
presomitic mesoderm | 1.94e-18 | 71 |
presumptive segmental plate | 1.94e-18 | 71 |
dermomyotome | 1.94e-18 | 71 |
trunk paraxial mesoderm | 1.94e-18 | 71 |
paraxial mesoderm | 4.17e-18 | 72 |
presumptive paraxial mesoderm | 4.17e-18 | 72 |
dense mesenchyme tissue | 8.80e-18 | 73 |
epithelial vesicle | 2.74e-16 | 78 |
multilaminar epithelium | 5.60e-15 | 83 |
trunk mesenchyme | 1.45e-09 | 122 |
mesenchyme | 2.71e-09 | 160 |
entire embryonic mesenchyme | 2.71e-09 | 160 |
skeletal muscle tissue | 3.96e-09 | 62 |
striated muscle tissue | 3.96e-09 | 62 |
myotome | 3.96e-09 | 62 |
muscle tissue | 9.69e-09 | 64 |
musculature | 9.69e-09 | 64 |
musculature of body | 9.69e-09 | 64 |
head connective tissue | 2.78e-08 | 2 |
substantia propria of cornea | 2.78e-08 | 2 |
annulus fibrosus | 4.75e-08 | 2 |
fibrocartilage | 4.75e-08 | 2 |
annulus fibrosus disci intervertebralis | 4.75e-08 | 2 |
unilaminar epithelium | 5.67e-07 | 148 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.