FFCP PHASE1:Hg19::chr4:2470824..2470882,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6047|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10067|TSSclassifier=S|UniProt=D6RA71,D6RAD8,D6RBZ1,D6RF58,D6RJ08,D6R9E0|association_with_transcript=0bp_to_ENST00000502316,ENST00000504782,ENST00000507247,ENST00000507784,ENST00000509258,ENST00000509388,ENST00000511843,ENST00000511859,ENST00000511892,ENST00000513284,ENST00000513578_5end|description=CAGE_peak_1_at_RNF4_5end|id=chr4:2470824..2470882,+|ontology_enrichment_celltype=CL:0000838!9.47e-22!52;CL:0000542!9.95e-21!53;CL:0000051!9.95e-21!53;CL:0000084!1.63e-11!25;CL:0000827!1.63e-11!25;CL:0000791!4.03e-11!18;CL:0000789!4.03e-11!18;CL:0002420!4.03e-11!18;CL:0002419!4.03e-11!18;CL:0000790!4.03e-11!18;CL:0000945!1.11e-09!24;CL:0000826!1.11e-09!24;CL:0000003!4.04e-09!722;CL:0000738!6.01e-09!140;CL:0000625!4.74e-08!11;CL:0000236!7.13e-08!14;CL:0000144!1.58e-07!625;CL:0002031!8.43e-07!124|ontology_enrichment_celltype_v019=CL:0000542;2.08e-12;53!CL:0000084;1.71e-11;25!CL:0000791;4.12e-11;18!CL:0000789;4.12e-11;18!CL:0002419;4.12e-11;18!CL:0000945;1.18e-09;24!CL:0000625;4.77e-08;11!CL:0000236;1.49e-07;13|ontology_enrichment_celltype_v019_2=CL:0000838,9.47e-22,52;CL:0000542,9.95e-21,53;CL:0000051,9.95e-21,53;CL:0000084,1.63e-11,25;CL:0000827,1.63e-11,25;CL:0000791,4.03e-11,18;CL:0000789,4.03e-11,18;CL:0002420,4.03e-11,18;CL:0002419,4.03e-11,18;CL:0000790,4.03e-11,18;CL:0000738,6.64e-10,136;CL:0000945,1.11e-09,24;CL:0000826,1.11e-09,24;CL:0000625,4.74e-08,11;CL:0000236,7.13e-08,14;CL:0002031,1.19e-07,120;CL:0002087,1.64e-07,115;CL:0000988,4.03e-07,177|ontology_enrichment_development_v019=CL:0000051;2.08e-12;53!CL:0000790;4.12e-11;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!1.05e-07!15;UBERON:0000179!1.05e-07!15;UBERON:0000463!1.05e-07!15|ontology_enrichment_uberon_v019=UBERON:0000178;1.05e-07;15!UBERON:0000179;1.05e-07;15!UBERON:0000463;1.05e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.05e-07,15;UBERON:0000179,1.05e-07,15;UBERON:0000463,1.05e-07,15|phase1_expression=62.679040848342,38.323993776486,53.2807647482771,37.0271203906583,44.2491483483015,48.8509573496206,40.5279805069297,74.5429450643661,44.1403711657727,89.9386207595522,55.1262922698218,65.0955288947913,54.072230536833,41.4617282416156,39.7676850873499,33.6162573225888,40.9832279056304,45.2792256040171,40.9863550984026,88.6471618152873,66.912226728115,66.7658556748327,59.5370853232598,56.1185142798825,58.7539553303677,94.7526231274596,96.7144943720361,91.77677101175,87.7202337373056,101.330961097664,74.9310036849808,51.4875885708199,68.674949481441,58.7908876165192,63.6780388770079,76.7713855432076,39.6360593102044,33.7937199204445,59.3611564511619,57.5078807397007,46.5744186419043,62.5114775416631,54.6060203384475,59.3224814220624,62.3495307086536,72.0474661727814,51.3668171561563,44.817299794379,50.4821384559019,52.0723230103092,41.4980344577143,57.2286996330376,41.3694816883942,38.0835963314457,39.2736811123591,57.4139135604944,54.0354177114535,60.2258938312827,41.9334932548137,48.7812121155662,38.9995646737415,63.3314496358495,49.0680597749214,58.3927908229791,40.9195026466303,38.0148100543064,37.3693349397345,46.4810030724975,48.4979114130787,59.509743449202,33.9023721474687,30.9353214229554,39.8742608175514,68.0242021924453,62.7182684896878,58.0754448058201,52.5697993765597,49.4081977448556,54.164522716916,58.427612466956,59.4760864825279,73.6136539671475,89.7580846752746,91.7512866920381,80.0558328477199,91.7469978517991,90.0890970831028,87.3623708730814,85.9358334620321,98.2675367171425,109.288890069014,116.272963495446,110.859236156316,81.946223718996,72.3056046246182,51.0965124463649,119.599540229211,116.331185773753,100.127930012761,94.1259969049518,103.643280789482,83.8002616150478,77.9306913631645,103.834545816982,101.344432171344,87.2843544659467,109.133957097301,75.9581525973254,79.7263800542054,80.5745732558013,86.4975555669705,101.431080007268,88.5270782077501,88.556014097695,77.3562876156828,99.0323655176728,88.9071545156457,76.2852928971438,100.701837423762,101.622367169387,103.522269163171,90.2929442225955,111.275012998474,111.476338315498,113.686961162635,97.0786733380469,91.9663356551572,105.037113220086,134.789858674888,117.45259154895,43.8852359365131,48.2904618986618,82.5992149509206,73.372147934067,56.1498459912196,34.473471512676,96.229599593183,56.4496449551058,57.3826340185892,35.0332447990851,44.0930624179493,59.5954793514592,63.7516754511949,55.24688197488,65.2340261245914,69.8260246570062,56.1082593389611,154.303433925556,122.978905817727,164.927130590327,70.5606546151803,43.0117297553062,62.485290289367,58.226718018173,71.314904155684,61.351323352635,67.5053741913898,47.2902669279872,56.2110695045002,68.9524462295221,74.120594348083,71.4655779375402,48.3242873945376,89.709791604392,46.9882329771421,62.3312103422877,43.5586982894769,42.5671396226958,82.790984231577,79.7383154037228,64.670215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.9525217380724,41.4031318751548,48.1905297840036,62.5239533743024,40.1708630762477,46.3257921262856,40.4265021195197,28.9951168945242,36.4016686472783,54.0010157547667,65.554147328644,50.798410730151,70.1909941210212,37.6675410273223,56.3331688486942,70.9820014339328,58.5808573960386,54.978687869315,70.2013018846549,54.1505060928037,45.5053946491461,37.2158383791971,28.8428840749778,45.7389490949751,55.7129909313418,53.8053955550118,57.0547667982434,57.1432100291757,50.9151604733547,78.0134095752626,48.5311066707894,69.9408552331598,74.7836435409594,73.1619875071763,37.7074452414114,41.0518875608188,54.5191097008527,40.6394636804994,52.0500470690412,45.1288665646919,93.1615791379748,59.7543909316847,66.0496897042797,62.4216454226833,46.9417335216964,34.4735886834009,42.4793136534226,46.4354257695544,29.0329057961919,70.9875142053458,113.243724699151,129.098308210124,39.7983827179473,57.2767171360125,50.2534344776198,44.9103301319394,56.2632821942895,71.5515203055121,63.6411568407446,33.6662995337705,30.9015048637304,32.4748040774696,49.5425212920322,47.9575900097317,38.1985488309827,50.3031983989115,84.3707232831031,30.233642104993,60.6870631138028,49.5458095053005,37.1551252856727,47.5020469325138,42.6558079851796,55.1483120217805,46.721415173357,50.4978880556046,48.1827529445076,57.4353647644821,75.751037891762,88.6940538516422,94.9440981286825,75.8854239074045,57.5218640896578,48.626268213636,55.5055655067353,45.4141990570495,45.0086291095557,69.7350304893876,70.5751668181694,51.9257321505049,50.257549848963,46.1273822526772,37.4362259191449,46.2910421472454,64.0925438162201,55.616176129521,59.6749939763868,89.54619251346,58.2533943478922,79.1215084995015,95.5195724703949,53.5755396402953,77.4416336151356,55.5543524437382,47.4757451006099,36.8894788688697,41.6612755061546,75.7627912376352,87.7115713000472,40.3674705290208,43.5346562622648,46.4869534603904,35.0523964114108,28.4053639900783,92.6764249480724,50.7075992126222,38.5886013593376,46.0742500338116,45.8927587274177,36.6837336345186,47.6971823185976,37.5425507845527,63.4433095309077,47.1999566846257,39.2796496769452,61.388507045263,89.438609352602|short_description=p1@RNF4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6047 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10067 | |||
|TSSclassifier=S | |||
|UniProt=D6RA71,D6RAD8,D6RBZ1,D6RF58,D6RJ08,D6R9E0 | |||
|association_with_transcript=0bp_to_ENST00000502316,ENST00000504782,ENST00000507247,ENST00000507784,ENST00000509258,ENST00000509388,ENST00000511843,ENST00000511859,ENST00000511892,ENST00000513284,ENST00000513578_5end | |||
|description=CAGE_peak_1_at_RNF4_5end | |||
|id=chr4:2470824..2470882,+ | |||
|ontology_enrichment_celltype=CL:0000838!9.47e-22!52;CL:0000542!9.95e-21!53;CL:0000051!9.95e-21!53;CL:0000084!1.63e-11!25;CL:0000827!1.63e-11!25;CL:0000791!4.03e-11!18;CL:0000789!4.03e-11!18;CL:0002420!4.03e-11!18;CL:0002419!4.03e-11!18;CL:0000790!4.03e-11!18;CL:0000945!1.11e-09!24;CL:0000826!1.11e-09!24;CL:0000003!4.04e-09!722;CL:0000738!6.01e-09!140;CL:0000625!4.74e-08!11;CL:0000236!7.13e-08!14;CL:0000144!1.58e-07!625;CL:0002031!8.43e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.08e-12;53!CL:0000084;1.71e-11;25!CL:0000791;4.12e-11;18!CL:0000789;4.12e-11;18!CL:0002419;4.12e-11;18!CL:0000945;1.18e-09;24!CL:0000625;4.77e-08;11!CL:0000236;1.49e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,9.47e-22,52;CL:0000542,9.95e-21,53;CL:0000051,9.95e-21,53;CL:0000084,1.63e-11,25;CL:0000827,1.63e-11,25;CL:0000791,4.03e-11,18;CL:0000789,4.03e-11,18;CL:0002420,4.03e-11,18;CL:0002419,4.03e-11,18;CL:0000790,4.03e-11,18;CL:0000738,6.64e-10,136;CL:0000945,1.11e-09,24;CL:0000826,1.11e-09,24;CL:0000625,4.74e-08,11;CL:0000236,7.13e-08,14;CL:0002031,1.19e-07,120;CL:0002087,1.64e-07,115;CL:0000988,4.03e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000051;2.08e-12;53!CL:0000790;4.12e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.05e-07!15;UBERON:0000179!1.05e-07!15;UBERON:0000463!1.05e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.05e-07;15!UBERON:0000179;1.05e-07;15!UBERON:0000463;1.05e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.05e-07,15;UBERON:0000179,1.05e-07,15;UBERON:0000463,1.05e-07,15 | |||
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| |||
|short_description=p1@RNF4 | |||
}} |
Revision as of 10:34, 13 September 2013
Short description: | p1@RNF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RNF4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000502316, ENST00000504782, ENST00000507247, ENST00000507784, ENST00000509258, ENST00000509388, ENST00000511843, ENST00000511859, ENST00000511892, ENST00000513284, ENST00000513578_5end |
EntrezGene: | RNF4 |
HGNC: | 10067 |
UniProt: | D6RA71D6RAD8D6RBZ1D6RF58D6RJ08D6R9E0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 9.47e-22 | 52 |
lymphocyte | 9.95e-21 | 53 |
common lymphoid progenitor | 9.95e-21 | 53 |
T cell | 1.63e-11 | 25 |
pro-T cell | 1.63e-11 | 25 |
mature alpha-beta T cell | 4.03e-11 | 18 |
alpha-beta T cell | 4.03e-11 | 18 |
immature T cell | 4.03e-11 | 18 |
mature T cell | 4.03e-11 | 18 |
immature alpha-beta T cell | 4.03e-11 | 18 |
leukocyte | 6.64e-10 | 136 |
lymphocyte of B lineage | 1.11e-09 | 24 |
pro-B cell | 1.11e-09 | 24 |
CD8-positive, alpha-beta T cell | 4.74e-08 | 11 |
B cell | 7.13e-08 | 14 |
hematopoietic lineage restricted progenitor cell | 1.19e-07 | 120 |
nongranular leukocyte | 1.64e-07 | 115 |
hematopoietic cell | 4.03e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 1.05e-07 | 15 |
haemolymphatic fluid | 1.05e-07 | 15 |
organism substance | 1.05e-07 | 15 |
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