FFCP PHASE1:Hg19::chr4:183481247..183481253,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C4398|description=CAGE_peak_at_chr4:183481247..183481253,+|id=chr4:183481247..183481253,+|ontology_enrichment_celltype=CL:0002319!3.92e-08!25|ontology_enrichment_celltype_v019=CL:0000064;1.19e-15;3!CL:0000067;1.19e-15;3!CL:0005012;1.19e-15;3!CL:0002304;1.19e-15;3|ontology_enrichment_celltype_v019_2=CL:0000064,1.87e-15,3;CL:0000067,1.87e-15,3;CL:0005012,1.87e-15,3;CL:0002304,1.87e-15,3|ontology_enrichment_development_v019=UBERON:0006238;1.80e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1115;3.16e-08;20!DOID:3093;7.54e-07;11|ontology_enrichment_disease_v019_2=DOID:1115,2.77e-08,20;DOID:3093,8.89e-07,11|ontology_enrichment_uberon=UBERON:0000073!1.83e-27!94;UBERON:0001016!1.83e-27!94;UBERON:0001017!1.22e-25!82;UBERON:0005743!1.57e-25!86;UBERON:0003075!1.83e-22!86;UBERON:0007284!1.83e-22!86;UBERON:0001049!2.86e-22!57;UBERON:0005068!2.86e-22!57;UBERON:0006241!2.86e-22!57;UBERON:0007135!2.86e-22!57;UBERON:0002346!1.27e-20!90;UBERON:0000955!5.83e-20!69;UBERON:0006238!5.83e-20!69;UBERON:0004121!1.42e-17!169;UBERON:0002616!4.46e-17!59;UBERON:0000924!1.33e-16!173;UBERON:0006601!1.33e-16!173;UBERON:0003080!1.53e-15!42;UBERON:0007023!7.91e-15!115;UBERON:0002780!8.46e-15!41;UBERON:0001890!8.46e-15!41;UBERON:0006240!8.46e-15!41;UBERON:0002020!1.62e-14!34;UBERON:0003528!1.62e-14!34;UBERON:0003056!5.96e-14!61;UBERON:0001893!1.23e-13!34;UBERON:0002791!3.07e-13!33;UBERON:0001869!7.85e-13!32;UBERON:0000033!1.72e-10!123;UBERON:0000153!1.91e-10!129;UBERON:0007811!1.91e-10!129;UBERON:0002308!8.87e-09!9;UBERON:0000125!8.87e-09!9;UBERON:0000956!3.12e-08!25;UBERON:0000203!3.12e-08!25;UBERON:0003076!4.84e-08!15;UBERON:0003057!4.84e-08!15;UBERON:0002619!9.26e-08!22;UBERON:0001950!1.45e-07!20;UBERON:0000064!5.10e-07!219;UBERON:0002298!5.53e-07!8;UBERON:0009663!7.50e-07!7;UBERON:0002420!9.70e-07!9;UBERON:0007245!9.70e-07!9;UBERON:0010009!9.70e-07!9;UBERON:0010011!9.70e-07!9;UBERON:0000454!9.70e-07!9|ontology_enrichment_uberon_v019=UBERON:0001778;1.19e-15;3!UBERON:0001775;1.19e-15;3!UBERON:0000488;7.33e-12;4!UBERON:0003528;2.02e-08;34!UBERON:0002020;2.02e-08;34!UBERON:0002203;4.74e-08;6!UBERON:0001768;4.74e-08;6!UBERON:0002200;4.74e-08;6!UBERON:0001017;1.19e-07;75!UBERON:0001950;1.45e-07;20!UBERON:0002791;6.64e-07;32!UBERON:0002619;7.40e-07;22!UBERON:0000073;8.86e-07;53!UBERON:0002616;8.86e-07;53|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.87e-15,3;UBERON:0001775,1.87e-15,3;UBERON:0001017,1.87e-14,81;UBERON:0000955,7.23e-14,68;UBERON:0006238,7.23e-14,68;UBERON:0001016,1.19e-12,89;UBERON:0000488,1.03e-11,4;UBERON:0003075,4.69e-11,82;UBERON:0007284,4.69e-11,82;UBERON:0002346,2.17e-10,86;UBERON:0003056,3.62e-10,61;UBERON:0000073,3.84e-10,53;UBERON:0002616,3.84e-10,53;UBERON:0001049,1.74e-09,56;UBERON:0005068,1.74e-09,56;UBERON:0006241,1.74e-09,56;UBERON:0007135,1.74e-09,56;UBERON:0003528,2.00e-09,34;UBERON:0002020,2.00e-09,34;UBERON:0010371,4.91e-08,104;UBERON:0002203,5.90e-08,6;UBERON:0001768,5.90e-08,6;UBERON:0002200,5.90e-08,6;UBERON:0002791,6.01e-08,32;UBERON:0001869,6.01e-08,32;UBERON:0002780,1.50e-07,41;UBERON:0001890,1.50e-07,41;UBERON:0003080,1.50e-07,41;UBERON:0006240,1.50e-07,41;UBERON:0001950,1.57e-07,20;UBERON:0001893,2.00e-07,34;UBERON:0004121,2.26e-07,171;UBERON:0000924,2.26e-07,171;UBERON:0006601,2.26e-07,171;UBERON:0002619,7.95e-07,22|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0.547497700291537,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425208599930087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,2.6469748805939,2.21729397462564,1.14185221401064,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,1.18143432568886,0,0,0,0,1.42003837006646,0,0,0.193260853163297,0,0,0,0.265059536642971,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0.579125226670317,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0,0,1.27587750330633,0,0,0,0,0,0,1.03985430765404,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61384789315225,0,0.256278298511402,0,0,0,0.154209693802656,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.206082023295445,0.457847324091717,0.495056999523528,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4398 | |||
|description=CAGE_peak_at_chr4:183481247..183481253,+ | |||
|id=chr4:183481247..183481253,+ | |||
|ontology_enrichment_celltype=CL:0002319!3.92e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0000064;1.19e-15;3!CL:0000067;1.19e-15;3!CL:0005012;1.19e-15;3!CL:0002304;1.19e-15;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,1.87e-15,3;CL:0000067,1.87e-15,3;CL:0005012,1.87e-15,3;CL:0002304,1.87e-15,3 | |||
|ontology_enrichment_development_v019=UBERON:0006238;1.80e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1115;3.16e-08;20!DOID:3093;7.54e-07;11 | |||
|ontology_enrichment_disease_v019_2=DOID:1115,2.77e-08,20;DOID:3093,8.89e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.83e-27!94;UBERON:0001016!1.83e-27!94;UBERON:0001017!1.22e-25!82;UBERON:0005743!1.57e-25!86;UBERON:0003075!1.83e-22!86;UBERON:0007284!1.83e-22!86;UBERON:0001049!2.86e-22!57;UBERON:0005068!2.86e-22!57;UBERON:0006241!2.86e-22!57;UBERON:0007135!2.86e-22!57;UBERON:0002346!1.27e-20!90;UBERON:0000955!5.83e-20!69;UBERON:0006238!5.83e-20!69;UBERON:0004121!1.42e-17!169;UBERON:0002616!4.46e-17!59;UBERON:0000924!1.33e-16!173;UBERON:0006601!1.33e-16!173;UBERON:0003080!1.53e-15!42;UBERON:0007023!7.91e-15!115;UBERON:0002780!8.46e-15!41;UBERON:0001890!8.46e-15!41;UBERON:0006240!8.46e-15!41;UBERON:0002020!1.62e-14!34;UBERON:0003528!1.62e-14!34;UBERON:0003056!5.96e-14!61;UBERON:0001893!1.23e-13!34;UBERON:0002791!3.07e-13!33;UBERON:0001869!7.85e-13!32;UBERON:0000033!1.72e-10!123;UBERON:0000153!1.91e-10!129;UBERON:0007811!1.91e-10!129;UBERON:0002308!8.87e-09!9;UBERON:0000125!8.87e-09!9;UBERON:0000956!3.12e-08!25;UBERON:0000203!3.12e-08!25;UBERON:0003076!4.84e-08!15;UBERON:0003057!4.84e-08!15;UBERON:0002619!9.26e-08!22;UBERON:0001950!1.45e-07!20;UBERON:0000064!5.10e-07!219;UBERON:0002298!5.53e-07!8;UBERON:0009663!7.50e-07!7;UBERON:0002420!9.70e-07!9;UBERON:0007245!9.70e-07!9;UBERON:0010009!9.70e-07!9;UBERON:0010011!9.70e-07!9;UBERON:0000454!9.70e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;1.19e-15;3!UBERON:0001775;1.19e-15;3!UBERON:0000488;7.33e-12;4!UBERON:0003528;2.02e-08;34!UBERON:0002020;2.02e-08;34!UBERON:0002203;4.74e-08;6!UBERON:0001768;4.74e-08;6!UBERON:0002200;4.74e-08;6!UBERON:0001017;1.19e-07;75!UBERON:0001950;1.45e-07;20!UBERON:0002791;6.64e-07;32!UBERON:0002619;7.40e-07;22!UBERON:0000073;8.86e-07;53!UBERON:0002616;8.86e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.87e-15,3;UBERON:0001775,1.87e-15,3;UBERON:0001017,1.87e-14,81;UBERON:0000955,7.23e-14,68;UBERON:0006238,7.23e-14,68;UBERON:0001016,1.19e-12,89;UBERON:0000488,1.03e-11,4;UBERON:0003075,4.69e-11,82;UBERON:0007284,4.69e-11,82;UBERON:0002346,2.17e-10,86;UBERON:0003056,3.62e-10,61;UBERON:0000073,3.84e-10,53;UBERON:0002616,3.84e-10,53;UBERON:0001049,1.74e-09,56;UBERON:0005068,1.74e-09,56;UBERON:0006241,1.74e-09,56;UBERON:0007135,1.74e-09,56;UBERON:0003528,2.00e-09,34;UBERON:0002020,2.00e-09,34;UBERON:0010371,4.91e-08,104;UBERON:0002203,5.90e-08,6;UBERON:0001768,5.90e-08,6;UBERON:0002200,5.90e-08,6;UBERON:0002791,6.01e-08,32;UBERON:0001869,6.01e-08,32;UBERON:0002780,1.50e-07,41;UBERON:0001890,1.50e-07,41;UBERON:0003080,1.50e-07,41;UBERON:0006240,1.50e-07,41;UBERON:0001950,1.57e-07,20;UBERON:0001893,2.00e-07,34;UBERON:0004121,2.26e-07,171;UBERON:0000924,2.26e-07,171;UBERON:0006601,2.26e-07,171;UBERON:0002619,7.95e-07,22 | |||
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| |||
|short_description=p@chr4:183481247..183481253,+ | |||
}} |
Revision as of 10:10, 13 September 2013
Short description: | p@chr4:183481247..183481253, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:183481247..183481253, + |
Coexpression cluster: | C4398_choriocarcinoma_pancreatic_gastric_synovial_small_astrocytoma_Fibroblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 1.87e-15 | 3 |
ciliated epithelial cell | 1.87e-15 | 3 |
multi-ciliated epithelial cell | 1.87e-15 | 3 |
non-pigmented ciliary epithelial cell | 1.87e-15 | 3 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 1.87e-15 | 3 |
ciliary body | 1.87e-15 | 3 |
central nervous system | 1.87e-14 | 81 |
brain | 7.23e-14 | 68 |
future brain | 7.23e-14 | 68 |
nervous system | 1.19e-12 | 89 |
atypical epithelium | 1.03e-11 | 4 |
neural plate | 4.69e-11 | 82 |
presumptive neural plate | 4.69e-11 | 82 |
neurectoderm | 2.17e-10 | 86 |
pre-chordal neural plate | 3.62e-10 | 61 |
regional part of nervous system | 3.84e-10 | 53 |
regional part of brain | 3.84e-10 | 53 |
neural tube | 1.74e-09 | 56 |
neural rod | 1.74e-09 | 56 |
future spinal cord | 1.74e-09 | 56 |
neural keel | 1.74e-09 | 56 |
brain grey matter | 2.00e-09 | 34 |
gray matter | 2.00e-09 | 34 |
ecto-epithelium | 4.91e-08 | 104 |
vasculature of eye | 5.90e-08 | 6 |
uvea | 5.90e-08 | 6 |
vasculature of head | 5.90e-08 | 6 |
regional part of telencephalon | 6.01e-08 | 32 |
cerebral hemisphere | 6.01e-08 | 32 |
regional part of forebrain | 1.50e-07 | 41 |
forebrain | 1.50e-07 | 41 |
anterior neural tube | 1.50e-07 | 41 |
future forebrain | 1.50e-07 | 41 |
neocortex | 1.57e-07 | 20 |
telencephalon | 2.00e-07 | 34 |
ectoderm-derived structure | 2.26e-07 | 171 |
ectoderm | 2.26e-07 | 171 |
presumptive ectoderm | 2.26e-07 | 171 |
regional part of cerebral cortex | 7.95e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
sarcoma | 2.77e-08 | 20 |
nervous system cancer | 8.89e-07 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.