FFCP PHASE1:Hg19::chr4:15480872..15480883,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57545|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29253|TSSclassifier=S|UniProt=|association_with_transcript=25bp_to_ENST00000389652_5end|description=CAGE_peak_3_at_CC2D2A_5end|id=chr4:15480872..15480883,+|ontology_enrichment_celltype=CL:0000055!7.79e-29!180;CL:0000680!3.53e-14!57;CL:0000056!3.53e-14!57;CL:0000355!3.53e-14!57;CL:0000187!6.77e-14!54;CL:0000393!1.84e-13!60;CL:0000211!1.84e-13!60;CL:0000057!3.33e-12!75;CL:0000183!5.82e-12!59;CL:0000192!1.81e-11!42;CL:0000514!1.81e-11!42;CL:0000220!1.75e-09!246;CL:0002321!1.83e-09!248;CL:0000359!9.89e-08!32|ontology_enrichment_celltype_v019=CL:0000393;4.98e-09;61!CL:0000211;4.98e-09;61!CL:0000187;5.09e-09;55!CL:0000192;1.64e-08;43!CL:0002552;3.92e-08;5!CL:0000359;5.12e-07;32!CL:0002494;9.70e-07;16|ontology_enrichment_celltype_v019_2=CL:0000187,1.12e-15,55;CL:0000680,2.02e-15,58;CL:0000056,2.02e-15,58;CL:0000355,2.02e-15,58;CL:0000393,2.33e-14,61;CL:0000211,2.33e-14,61;CL:0000057,2.72e-12,76;CL:0000192,3.27e-12,43;CL:0000514,3.27e-12,43;CL:0000048,3.81e-09,427;CL:0000723,4.39e-09,433;CL:0000034,1.79e-08,441;CL:0000136,4.10e-08,15;CL:0002552,4.68e-08,5;CL:0000359,3.37e-07,32|ontology_enrichment_development_v019=CL:0000514;1.64e-08;43!CL:0000355;2.82e-08;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!4.63e-17!365;UBERON:0000481!1.29e-16!347;UBERON:0000914!1.01e-15!83;UBERON:0002329!1.01e-15!83;UBERON:0003077!1.01e-15!83;UBERON:0003059!1.01e-15!83;UBERON:0007282!1.01e-15!83;UBERON:0009618!1.01e-15!83;UBERON:0007285!1.01e-15!83;UBERON:0004290!3.67e-13!70;UBERON:0001134!5.22e-13!61;UBERON:0002036!5.22e-13!61;UBERON:0003082!5.22e-13!61;UBERON:0002385!1.06e-12!63;UBERON:0001015!1.06e-12!63;UBERON:0000383!1.06e-12!63;UBERON:0003102!1.76e-12!95;UBERON:0000486!1.16e-11!82;UBERON:0000119!1.76e-11!312;UBERON:0000483!2.74e-11!309;UBERON:0000468!3.38e-11!659;UBERON:0002100!6.57e-10!216;UBERON:0005256!2.60e-09!143;UBERON:0000922!3.85e-09!612;UBERON:0002050!1.98e-08!605;UBERON:0005423!1.98e-08!605;UBERON:0000477!2.07e-08!286;UBERON:0000923!3.86e-08!604;UBERON:0005291!3.86e-08!604;UBERON:0006598!3.86e-08!604;UBERON:0002532!3.86e-08!604;UBERON:0000490!5.24e-08!138;UBERON:0003104!9.39e-08!238;UBERON:0009142!9.39e-08!238;UBERON:0000467!9.53e-08!625;UBERON:0000480!1.42e-07!626|ontology_enrichment_uberon_v019=UBERON:0003688;1.42e-08;6!UBERON:0002358;1.42e-08;6!UBERON:0003684;1.42e-08;6!UBERON:0001178;1.42e-08;6!UBERON:0002385;2.19e-07;31!UBERON:0001015;2.19e-07;31!UBERON:0000383;2.19e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0001134,6.11e-15,62;UBERON:0002036,6.11e-15,62;UBERON:0003082,6.11e-15,62;UBERON:0002385,3.58e-14,64;UBERON:0001015,3.58e-14,64;UBERON:0000383,3.58e-14,64;UBERON:0007524,2.50e-13,73;UBERON:0002329,7.45e-13,71;UBERON:0003059,7.45e-13,71;UBERON:0007282,7.45e-13,71;UBERON:0004290,7.45e-13,71;UBERON:0009618,7.45e-13,71;UBERON:0003077,1.53e-12,72;UBERON:0007285,1.53e-12,72;UBERON:0007503,7.44e-11,78;UBERON:0000486,2.06e-10,83;UBERON:0003688,4.17e-09,6;UBERON:0002358,4.17e-09,6;UBERON:0003684,4.17e-09,6;UBERON:0001178,4.17e-09,6;UBERON:0005256,1.55e-07,122;UBERON:0003104,2.65e-07,160;UBERON:0009142,2.65e-07,160;UBERON:0003102,7.75e-07,99|phase1_expression=1.99846217197612,0.214100523890983,2.11431606143957,2.00146596706261,1.78784437770915,0,2.53299878168311,0,0.261185628199839,0.491467873003018,0,0.436882744260345,0,1.73272894144065,0.662794751455832,1.34465029290355,1.20538905604795,2.19093027116212,0.975865597581014,0.369363174230364,0.408001382488506,0.313454721478088,0.286235987131057,0.958120975510189,1.00434111675842,0,0,0.0787107813136792,0,0,0,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.511450247374121,1.0843174571537,0.50133791063589,0.724232594804119,2.3858578411533,0.486634870302636,0.756278537312543,0.221729397462564,0.351339142772504,0.327447688744282,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0,0,0,0,0.805658634218294,1.52054421143703,0,0.367663080345869,0,0.535798369704479,0.22452937262617,0.563057402416611,0,0,0.732806975721629,0,0,0,0.496971951695318,2.15271869829786,2.78059279707759,1.72101972449288,0.354668382198357,0,1.06748995729705,0.98667019366864,1.24484414159907,1.21239604862719,0.817309515567294,0.756787138224657,0,2.10889288650417,0.936480230490962,0.570471821544449,0.747243402759005,1.40921398372518,0.485618833104395,0.702254033511242,1.42907919878425,1.10550885580591,2.6864703105699,5.94001428641027,2.22540236350701,1.82032272387605,0.718618141816238,1.0100166837244,0.750711119231785,1.6623846929051,3.07284334616587,1.5324389789951,1.20190447125277,0.453728732640084,0.538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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57545 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29253 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=25bp_to_ENST00000389652_5end | |||
|description=CAGE_peak_3_at_CC2D2A_5end | |||
|id=chr4:15480872..15480883,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.79e-29!180;CL:0000680!3.53e-14!57;CL:0000056!3.53e-14!57;CL:0000355!3.53e-14!57;CL:0000187!6.77e-14!54;CL:0000393!1.84e-13!60;CL:0000211!1.84e-13!60;CL:0000057!3.33e-12!75;CL:0000183!5.82e-12!59;CL:0000192!1.81e-11!42;CL:0000514!1.81e-11!42;CL:0000220!1.75e-09!246;CL:0002321!1.83e-09!248;CL:0000359!9.89e-08!32 | |||
|ontology_enrichment_celltype_v019=CL:0000393;4.98e-09;61!CL:0000211;4.98e-09;61!CL:0000187;5.09e-09;55!CL:0000192;1.64e-08;43!CL:0002552;3.92e-08;5!CL:0000359;5.12e-07;32!CL:0002494;9.70e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,1.12e-15,55;CL:0000680,2.02e-15,58;CL:0000056,2.02e-15,58;CL:0000355,2.02e-15,58;CL:0000393,2.33e-14,61;CL:0000211,2.33e-14,61;CL:0000057,2.72e-12,76;CL:0000192,3.27e-12,43;CL:0000514,3.27e-12,43;CL:0000048,3.81e-09,427;CL:0000723,4.39e-09,433;CL:0000034,1.79e-08,441;CL:0000136,4.10e-08,15;CL:0002552,4.68e-08,5;CL:0000359,3.37e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;1.64e-08;43!CL:0000355;2.82e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!4.63e-17!365;UBERON:0000481!1.29e-16!347;UBERON:0000914!1.01e-15!83;UBERON:0002329!1.01e-15!83;UBERON:0003077!1.01e-15!83;UBERON:0003059!1.01e-15!83;UBERON:0007282!1.01e-15!83;UBERON:0009618!1.01e-15!83;UBERON:0007285!1.01e-15!83;UBERON:0004290!3.67e-13!70;UBERON:0001134!5.22e-13!61;UBERON:0002036!5.22e-13!61;UBERON:0003082!5.22e-13!61;UBERON:0002385!1.06e-12!63;UBERON:0001015!1.06e-12!63;UBERON:0000383!1.06e-12!63;UBERON:0003102!1.76e-12!95;UBERON:0000486!1.16e-11!82;UBERON:0000119!1.76e-11!312;UBERON:0000483!2.74e-11!309;UBERON:0000468!3.38e-11!659;UBERON:0002100!6.57e-10!216;UBERON:0005256!2.60e-09!143;UBERON:0000922!3.85e-09!612;UBERON:0002050!1.98e-08!605;UBERON:0005423!1.98e-08!605;UBERON:0000477!2.07e-08!286;UBERON:0000923!3.86e-08!604;UBERON:0005291!3.86e-08!604;UBERON:0006598!3.86e-08!604;UBERON:0002532!3.86e-08!604;UBERON:0000490!5.24e-08!138;UBERON:0003104!9.39e-08!238;UBERON:0009142!9.39e-08!238;UBERON:0000467!9.53e-08!625;UBERON:0000480!1.42e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.42e-08;6!UBERON:0002358;1.42e-08;6!UBERON:0003684;1.42e-08;6!UBERON:0001178;1.42e-08;6!UBERON:0002385;2.19e-07;31!UBERON:0001015;2.19e-07;31!UBERON:0000383;2.19e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,6.11e-15,62;UBERON:0002036,6.11e-15,62;UBERON:0003082,6.11e-15,62;UBERON:0002385,3.58e-14,64;UBERON:0001015,3.58e-14,64;UBERON:0000383,3.58e-14,64;UBERON:0007524,2.50e-13,73;UBERON:0002329,7.45e-13,71;UBERON:0003059,7.45e-13,71;UBERON:0007282,7.45e-13,71;UBERON:0004290,7.45e-13,71;UBERON:0009618,7.45e-13,71;UBERON:0003077,1.53e-12,72;UBERON:0007285,1.53e-12,72;UBERON:0007503,7.44e-11,78;UBERON:0000486,2.06e-10,83;UBERON:0003688,4.17e-09,6;UBERON:0002358,4.17e-09,6;UBERON:0003684,4.17e-09,6;UBERON:0001178,4.17e-09,6;UBERON:0005256,1.55e-07,122;UBERON:0003104,2.65e-07,160;UBERON:0009142,2.65e-07,160;UBERON:0003102,7.75e-07,99 | |||
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| |||
|short_description=p3@CC2D2A | |||
}} |
Revision as of 02:52, 13 September 2013
Short description: | p3@CC2D2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CC2D2A_5end |
Coexpression cluster: | NA |
Association with transcript: | 25bp_to_ENST00000389652_5end |
EntrezGene: | CC2D2A |
HGNC: | 29253 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 1.12e-15 | 55 |
muscle precursor cell | 2.02e-15 | 58 |
myoblast | 2.02e-15 | 58 |
multi-potent skeletal muscle stem cell | 2.02e-15 | 58 |
electrically responsive cell | 2.33e-14 | 61 |
electrically active cell | 2.33e-14 | 61 |
fibroblast | 2.72e-12 | 76 |
smooth muscle cell | 3.27e-12 | 43 |
smooth muscle myoblast | 3.27e-12 | 43 |
multi fate stem cell | 3.81e-09 | 427 |
somatic stem cell | 4.39e-09 | 433 |
stem cell | 1.79e-08 | 441 |
fat cell | 4.10e-08 | 15 |
fibroblast of gingiva | 4.68e-08 | 5 |
vascular associated smooth muscle cell | 3.37e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 6.11e-15 | 62 |
striated muscle tissue | 6.11e-15 | 62 |
myotome | 6.11e-15 | 62 |
muscle tissue | 3.58e-14 | 64 |
musculature | 3.58e-14 | 64 |
musculature of body | 3.58e-14 | 64 |
dense mesenchyme tissue | 2.50e-13 | 73 |
somite | 7.45e-13 | 71 |
presomitic mesoderm | 7.45e-13 | 71 |
presumptive segmental plate | 7.45e-13 | 71 |
dermomyotome | 7.45e-13 | 71 |
trunk paraxial mesoderm | 7.45e-13 | 71 |
paraxial mesoderm | 1.53e-12 | 72 |
presumptive paraxial mesoderm | 1.53e-12 | 72 |
epithelial vesicle | 7.44e-11 | 78 |
multilaminar epithelium | 2.06e-10 | 83 |
omentum | 4.17e-09 | 6 |
peritoneum | 4.17e-09 | 6 |
abdominal cavity | 4.17e-09 | 6 |
visceral peritoneum | 4.17e-09 | 6 |
trunk mesenchyme | 1.55e-07 | 122 |
mesenchyme | 2.65e-07 | 160 |
entire embryonic mesenchyme | 2.65e-07 | 160 |
surface structure | 7.75e-07 | 99 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.