FFCP PHASE1:Mm9::chr12:83717564..83717568,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=50779|HGNC=|UniProt=B1B1E4|association_with_transcript=-343bp_to_ENSMUST00000161801_5end|description=CAGE_peak_6_at_Rgs6_5end|id=chr12:83717564..83717568,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!5.44e-12!50;UBERON:0006238!5.44e-12!50;UBERON:0002616!2.01e-11!49;UBERON:0004111!2.72e-11!122;UBERON:0003080!5.22e-11!40;UBERON:0000033!1.78e-10!63;UBERON:0002780!2.35e-10!39;UBERON:0001890!2.35e-10!39;UBERON:0006240!2.35e-10!39;UBERON:0001049!2.97e-10!52;UBERON:0005068!2.97e-10!52;UBERON:0006241!2.97e-10!52;UBERON:0007135!2.97e-10!52;UBERON:0000025!1.56e-09!114;UBERON:0003056!1.08e-08!49;UBERON:0001017!2.22e-08!73;UBERON:0005743!2.22e-08!73;UBERON:0007100!3.90e-08!18;UBERON:0000948!3.90e-08!18;UBERON:0005498!3.90e-08!18;UBERON:0004140!3.90e-08!18;UBERON:0009881!3.90e-08!18;UBERON:0004141!3.90e-08!18;UBERON:0003084!3.90e-08!18;UBERON:0007005!3.90e-08!18;UBERON:0004139!3.90e-08!18;UBERON:0004291!3.90e-08!18;UBERON:0000956!4.34e-08!21;UBERON:0001869!4.34e-08!21;UBERON:0000203!4.34e-08!21;UBERON:0000073!7.15e-08!75;UBERON:0001016!7.15e-08!75;UBERON:0003103!1.29e-07!43;UBERON:0002791!2.46e-07!29;UBERON:0003528!2.46e-07!29;UBERON:0001893!2.46e-07!29;UBERON:0002021!3.37e-07!10;UBERON:0000411!3.37e-07!10;UBERON:0001950!3.37e-07!10;UBERON:0004121!6.65e-07!102;UBERON:0000924!6.65e-07!102;UBERON:0006601!6.65e-07!102|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.19e-32,10;UBERON:0000411,1.19e-32,10;UBERON:0001950,1.19e-32,10;UBERON:0002619,4.58e-19,17;UBERON:0000956,2.35e-15,21;UBERON:0001869,2.35e-15,21;UBERON:0000203,2.35e-15,21;UBERON:0003528,5.45e-11,29;UBERON:0002791,5.45e-11,29;UBERON:0001893,5.45e-11,29;UBERON:0010314,1.84e-09,92;UBERON:0007100,2.13e-09,18;UBERON:0000948,2.13e-09,18;UBERON:0005498,2.13e-09,18;UBERON:0004140,2.13e-09,18;UBERON:0009881,2.13e-09,18;UBERON:0004141,2.13e-09,18;UBERON:0003084,2.13e-09,18;UBERON:0007005,2.13e-09,18;UBERON:0004139,2.13e-09,18;UBERON:0004291,2.13e-09,18;UBERON:0002020,2.68e-09,34;UBERON:0002780,4.89e-08,39;UBERON:0001890,4.89e-08,39;UBERON:0006240,4.89e-08,39;UBERON:0003080,8.02e-08,40;UBERON:0000025,2.20e-07,114;UBERON:0004535,2.43e-07,23;UBERON:0001009,2.43e-07,23;UBERON:0004111,8.21e-07,122;UBERON:0002616,9.96e-07,46|phase1_expression=0.80074423552397,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0.633831403506179,0,0,0,0,0,0,0,0.414758449233911,0.945041568321835,0.630974884054146,0,0,0.367472397644862,0,0.919218786610021,0,0.127687338085188,0.307213066512487,0.263772575460388,0.365950574409639,0,0,0,0,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845060518660083,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0.449371918214468,0,0.753926112677186,0,0.767146371990992,0.20778804455956,0.162241263067758,0.101839363850316,0.248813941220186,0,0,0,0,0,0,0.0680364991513279,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828503090142008,0,0,0.23674473558521,0.590292695242212,0.308534225774757,0.465067889500816,0.804820204198858,0.467061369468678,0.822799249567402,3.11918181750281,1.62137619091711,2.92399974850665,2.41505126820156,1.34206418760372,0,0.617427674275707,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0.203651327845314,0.193952487167626,0.0701358198903186,0.379419222745544,0.295220295959204,0,0.370191491765402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0,0,0,0,0,0.472905432318573,0,0.159454768657487,0,0.345369963731791,0,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0.214337035031592,0.354680467284547,0.356737635204141,0.493647061806363,0.304464949114599,0,0.42366414172764,0.220528398054962,0.16488625294148,0.161464426695906,0.0603129249281559,0.238744688006273,0.164140899745061,0,0.370850604021019,0,0.206386867963223,0,0,0,0,0,0,0,0.954670618015114,0,0.203319467126849,0,0.418176592028937,0.218362563746178,0.539457385539283,0.661227645802687,3.40282724579238,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0.501572104035363,2.82375921308533,3.22227665555024,5.15605962095457,1.54667864109319,0,0,1.35004500046361,0.45032120322422,2.71885445390523,1.03552062350364,0,0,0,0,0,0,0,0,0,0.252697211763798,0,0.188626341386076,0.37456602987953,0,0.0574354689556133,0,0,0.192909220463705,0,0,0,0.354951612318675,0.238436189947321,0.436039249896986,0.0941093804153306,0,0,0.263069711437843,0,0,0.118635018124174,0.197008964751127,0,0.154936841185966,0,0,0,0.214871054048298,0,0,0|short_description=p6@Rgs6}} | ||
|EntrezGene=50779 | |||
|HGNC= | |||
|UniProt=B1B1E4 | |||
|association_with_transcript=-343bp_to_ENSMUST00000161801_5end | |||
|description=CAGE_peak_6_at_Rgs6_5end | |||
|id=chr12:83717564..83717568,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!5.44e-12!50;UBERON:0006238!5.44e-12!50;UBERON:0002616!2.01e-11!49;UBERON:0004111!2.72e-11!122;UBERON:0003080!5.22e-11!40;UBERON:0000033!1.78e-10!63;UBERON:0002780!2.35e-10!39;UBERON:0001890!2.35e-10!39;UBERON:0006240!2.35e-10!39;UBERON:0001049!2.97e-10!52;UBERON:0005068!2.97e-10!52;UBERON:0006241!2.97e-10!52;UBERON:0007135!2.97e-10!52;UBERON:0000025!1.56e-09!114;UBERON:0003056!1.08e-08!49;UBERON:0001017!2.22e-08!73;UBERON:0005743!2.22e-08!73;UBERON:0007100!3.90e-08!18;UBERON:0000948!3.90e-08!18;UBERON:0005498!3.90e-08!18;UBERON:0004140!3.90e-08!18;UBERON:0009881!3.90e-08!18;UBERON:0004141!3.90e-08!18;UBERON:0003084!3.90e-08!18;UBERON:0007005!3.90e-08!18;UBERON:0004139!3.90e-08!18;UBERON:0004291!3.90e-08!18;UBERON:0000956!4.34e-08!21;UBERON:0001869!4.34e-08!21;UBERON:0000203!4.34e-08!21;UBERON:0000073!7.15e-08!75;UBERON:0001016!7.15e-08!75;UBERON:0003103!1.29e-07!43;UBERON:0002791!2.46e-07!29;UBERON:0003528!2.46e-07!29;UBERON:0001893!2.46e-07!29;UBERON:0002021!3.37e-07!10;UBERON:0000411!3.37e-07!10;UBERON:0001950!3.37e-07!10;UBERON:0004121!6.65e-07!102;UBERON:0000924!6.65e-07!102;UBERON:0006601!6.65e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.19e-32,10;UBERON:0000411,1.19e-32,10;UBERON:0001950,1.19e-32,10;UBERON:0002619,4.58e-19,17;UBERON:0000956,2.35e-15,21;UBERON:0001869,2.35e-15,21;UBERON:0000203,2.35e-15,21;UBERON:0003528,5.45e-11,29;UBERON:0002791,5.45e-11,29;UBERON:0001893,5.45e-11,29;UBERON:0010314,1.84e-09,92;UBERON:0007100,2.13e-09,18;UBERON:0000948,2.13e-09,18;UBERON:0005498,2.13e-09,18;UBERON:0004140,2.13e-09,18;UBERON:0009881,2.13e-09,18;UBERON:0004141,2.13e-09,18;UBERON:0003084,2.13e-09,18;UBERON:0007005,2.13e-09,18;UBERON:0004139,2.13e-09,18;UBERON:0004291,2.13e-09,18;UBERON:0002020,2.68e-09,34;UBERON:0002780,4.89e-08,39;UBERON:0001890,4.89e-08,39;UBERON:0006240,4.89e-08,39;UBERON:0003080,8.02e-08,40;UBERON:0000025,2.20e-07,114;UBERON:0004535,2.43e-07,23;UBERON:0001009,2.43e-07,23;UBERON:0004111,8.21e-07,122;UBERON:0002616,9.96e-07,46 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0.633831403506179,0,0,0,0,0,0,0,0.414758449233911,0.945041568321835,0.630974884054146,0,0,0.367472397644862,0,0.919218786610021,0,0.127687338085188,0.307213066512487,0.263772575460388,0.365950574409639,0,0,0,0,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845060518660083,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0.449371918214468,0,0.753926112677186,0,0.767146371990992,0.20778804455956,0.162241263067758,0.101839363850316,0.248813941220186,0,0,0,0,0,0,0.0680364991513279,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828503090142008,0,0,0.23674473558521,0.590292695242212,0.308534225774757,0.465067889500816,0.804820204198858,0.467061369468678,0.822799249567402,3.11918181750281,1.62137619091711,2.92399974850665,2.41505126820156,1.34206418760372,0,0.617427674275707,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0.203651327845314,0.193952487167626,0.0701358198903186,0.379419222745544,0.295220295959204,0,0.370191491765402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0,0,0,0,0,0.472905432318573,0,0.159454768657487,0,0.345369963731791,0,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0.214337035031592,0.354680467284547,0.356737635204141,0.493647061806363,0.304464949114599,0,0.42366414172764,0.220528398054962,0.16488625294148,0.161464426695906,0.0603129249281559,0.238744688006273,0.164140899745061,0,0.370850604021019,0,0.206386867963223,0,0,0,0,0,0,0,0.954670618015114,0,0.203319467126849,0,0.418176592028937,0.218362563746178,0.539457385539283,0.661227645802687,3.40282724579238,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0.501572104035363,2.82375921308533,3.22227665555024,5.15605962095457,1.54667864109319,0,0,1.35004500046361,0.45032120322422,2.71885445390523,1.03552062350364,0,0,0,0,0,0,0,0,0,0.252697211763798,0,0.188626341386076,0.37456602987953,0,0.0574354689556133,0,0,0.192909220463705,0,0,0,0.354951612318675,0.238436189947321,0.436039249896986,0.0941093804153306,0,0,0.263069711437843,0,0,0.118635018124174,0.197008964751127,0,0.154936841185966,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p6@Rgs6 | |||
}} |
Revision as of 23:24, 12 September 2013
Short description: | p6@Rgs6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Rgs6_5end |
Coexpression cluster: | NA |
Association with transcript: | -343bp_to_ENSMUST00000161801_5end |
EntrezGene: | Rgs6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 1.19e-32 | 10 |
visual cortex | 1.19e-32 | 10 |
neocortex | 1.19e-32 | 10 |
regional part of cerebral cortex | 4.58e-19 | 17 |
cerebral cortex | 2.35e-15 | 21 |
cerebral hemisphere | 2.35e-15 | 21 |
pallium | 2.35e-15 | 21 |
brain grey matter | 5.45e-11 | 29 |
regional part of telencephalon | 5.45e-11 | 29 |
telencephalon | 5.45e-11 | 29 |
structure with developmental contribution from neural crest | 1.84e-09 | 92 |
primary circulatory organ | 2.13e-09 | 18 |
heart | 2.13e-09 | 18 |
primitive heart tube | 2.13e-09 | 18 |
primary heart field | 2.13e-09 | 18 |
anterior lateral plate mesoderm | 2.13e-09 | 18 |
heart tube | 2.13e-09 | 18 |
heart primordium | 2.13e-09 | 18 |
cardiac mesoderm | 2.13e-09 | 18 |
cardiogenic plate | 2.13e-09 | 18 |
heart rudiment | 2.13e-09 | 18 |
gray matter | 2.68e-09 | 34 |
regional part of forebrain | 4.89e-08 | 39 |
forebrain | 4.89e-08 | 39 |
future forebrain | 4.89e-08 | 39 |
anterior neural tube | 8.02e-08 | 40 |
tube | 2.20e-07 | 114 |
cardiovascular system | 2.43e-07 | 23 |
circulatory system | 2.43e-07 | 23 |
anatomical conduit | 8.21e-07 | 122 |
regional part of brain | 9.96e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.