FFCP PHASE1:Hg19::chr3:187086155..187086211,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64108|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=23992|TSSclassifier=W|UniProt=Q96DX8|association_with_transcript=0bp_to_NM_022147,uc003frm.2_5end|coexpression_cluster_id=C413|description=CAGE_peak_1_at_RTP4_5end|id=chr3:187086155..187086211,+|ontology_enrichment_celltype=CL:0002087!5.17e-32!119;CL:0002031!5.42e-31!124;CL:0000738!5.49e-27!140;CL:0002032!7.12e-20!165;CL:0000837!7.12e-20!165;CL:0000037!1.86e-19!172;CL:0000566!1.86e-19!172;CL:0000988!8.33e-18!182;CL:0000839!1.22e-17!70;CL:0002194!1.34e-17!63;CL:0000576!1.34e-17!63;CL:0000040!1.34e-17!63;CL:0000559!1.34e-17!63;CL:0002009!3.66e-17!65;CL:0002057!1.03e-16!42;CL:0000557!2.22e-16!71;CL:0000766!1.30e-14!76;CL:0000542!7.25e-14!53;CL:0000051!7.25e-14!53;CL:0000860!8.00e-14!45;CL:0000838!1.75e-13!52;CL:0000763!4.81e-08!112;CL:0000049!4.81e-08!112;CL:0000945!1.02e-07!24;CL:0000826!1.02e-07!24;CL:0000791!3.03e-07!18;CL:0000789!3.03e-07!18;CL:0002420!3.03e-07!18;CL:0002419!3.03e-07!18;CL:0000790!3.03e-07!18;CL:0000084!7.77e-07!25;CL:0000827!7.77e-07!25|ontology_enrichment_celltype_v019=CL:0000860;3.20e-14;33!CL:0002057;3.20e-14;33!CL:0000473;8.82e-14;39!CL:0000234;8.82e-14;39!CL:0000576;2.74e-13;48!CL:0002087;7.58e-12;104!CL:0000766;4.18e-09;69!CL:0000542;7.19e-09;53!CL:0000738;6.96e-08;136!CL:0000945;7.03e-08;24!CL:0000791;1.91e-07;18!CL:0000789;1.91e-07;18!CL:0002419;1.91e-07;18!CL:0000084;2.76e-07;25|ontology_enrichment_celltype_v019_2=CL:0002087,1.25e-37,115;CL:0002031,1.68e-35,120;CL:0000738,3.35e-31,136;CL:0002032,1.32e-24,161;CL:0000837,1.32e-24,161;CL:0000037,3.99e-24,168;CL:0002194,2.36e-22,59;CL:0000576,2.36e-22,59;CL:0000040,2.36e-22,59;CL:0000559,2.36e-22,59;CL:0000988,5.66e-22,177;CL:0000839,1.07e-21,66;CL:0002009,2.45e-21,61;CL:0000557,5.84e-20,67;CL:0000473,7.05e-20,48;CL:0000234,7.05e-20,48;CL:0000766,3.14e-18,72;CL:0000860,6.71e-18,42;CL:0002057,6.71e-18,42;CL:0000542,1.12e-14,53;CL:0000051,1.12e-14,53;CL:0000838,2.94e-14,52;CL:0000763,5.25e-11,108;CL:0000049,5.25e-11,108;CL:0000791,8.04e-08,18;CL:0000789,8.04e-08,18;CL:0002420,8.04e-08,18;CL:0002419,8.04e-08,18;CL:0000790,8.04e-08,18;CL:0000945,1.03e-07,24;CL:0000826,1.03e-07,24;CL:0000084,1.52e-07,25;CL:0000827,1.52e-07,25;CL:0000134,4.63e-07,354|ontology_enrichment_development_v019=CL:0002057;4.13e-13;42!CL:0000051;7.19e-09;53!CL:0000790;1.91e-07;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.78e-22!102;UBERON:0003061!2.78e-22!102;UBERON:0002193!1.16e-21!112;UBERON:0002371!5.79e-15!80;UBERON:0002405!2.52e-14!115;UBERON:0001474!5.88e-12!86;UBERON:0004765!1.33e-10!101;UBERON:0001434!1.33e-10!101;UBERON:0007023!9.71e-09!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.13e-27,98;UBERON:0003061,4.13e-27,98;UBERON:0002193,3.20e-26,108;UBERON:0002405,4.12e-21,93;UBERON:0002371,9.15e-19,76;UBERON:0001474,2.63e-15,82;UBERON:0004765,6.29e-13,90;UBERON:0001434,1.68e-12,100;UBERON:0007023,2.84e-07,114|phase1_expression=1.45342703416445,0.642301571672949,1.26858963686374,1.0007329835313,1.78784437770915,1.74467704820074,0,0,0,0,0,0,0,0.247532705920093,0,1.34465029290355,0,0,0,0.369363174230364,0,0,0.85870796139317,0,0.125542639594803,7.56492716904717,6.56804715599566,6.21815172378066,1.57345710739562,2.68680578668049,2.63187409637329,0,0,0,0.542270404062111,0.710846162437108,8.51441274071057,1.66198622559563,1.00272223735071,1.30206522429511,9.40444991807682,9.06902264853143,7.21211589375722,5.96132778996215,4.91238726795452,4.60909716256851,3.0215774797739,2.05583944010913,1.23882548358041,33.6600099016916,12.5518746199259,26.249527517633,21.0294865249337,10.3277549373412,4.06279459783025,2.07066573496865,0.545812300115692,2.69668181334102,83.5609026172564,23.7487480036309,30.0488449125549,26.0582527147506,20.7442203926497,21.3112375266347,76.6152389979462,14.1846306172785,24.912889959823,24.6223691951608,17.7304192262868,21.2845067811014,121.079900526674,37.9325965067192,82.2802207346299,11.8302960334687,13.6066751977628,9.85395633889367,7.52601828681517,6.00707571366025,4.66104201421532,15.9607136495099,16.1122508531263,12.4211624559951,10.5597746676794,17.4764355603882,17.7901850772711,14.9355577898278,14.4142555332964,16.66782075868,17.1871666924064,12.4026988089597,1.1384259382189,1.76171156811282,1.14681968437569,2.64342657158052,1.12101712596307,5.53106578027662,1.7703879310245,1.57204305099666,1.85041349099558,28.7560772071966,7.82213439920617,10.8892995318989,19.4826728407911,30.8606965571931,15.0249012812167,25.4763978771164,21.1227013736712,27.4115424212945,35.7663205789665,17.265979983386,20.4499013161528,20.8658221729238,8.45233410023744,10.4340922954988,3.1360657141493,17.3363294327276,13.4127172760672,11.6833331464094,9.61474829674111,17.8396632021494,14.3238359848412,32.3153695112447,14.3046363123884,15.3583933385302,22.4875307794223,17.9950711553453,21.3493279199472,2.6208876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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64108 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23992 | |||
|TSSclassifier=W | |||
|UniProt=Q96DX8 | |||
|association_with_transcript=0bp_to_NM_022147,uc003frm.2_5end | |||
|coexpression_cluster_id=C413 | |||
|description=CAGE_peak_1_at_RTP4_5end | |||
|id=chr3:187086155..187086211,+ | |||
|ontology_enrichment_celltype=CL:0002087!5.17e-32!119;CL:0002031!5.42e-31!124;CL:0000738!5.49e-27!140;CL:0002032!7.12e-20!165;CL:0000837!7.12e-20!165;CL:0000037!1.86e-19!172;CL:0000566!1.86e-19!172;CL:0000988!8.33e-18!182;CL:0000839!1.22e-17!70;CL:0002194!1.34e-17!63;CL:0000576!1.34e-17!63;CL:0000040!1.34e-17!63;CL:0000559!1.34e-17!63;CL:0002009!3.66e-17!65;CL:0002057!1.03e-16!42;CL:0000557!2.22e-16!71;CL:0000766!1.30e-14!76;CL:0000542!7.25e-14!53;CL:0000051!7.25e-14!53;CL:0000860!8.00e-14!45;CL:0000838!1.75e-13!52;CL:0000763!4.81e-08!112;CL:0000049!4.81e-08!112;CL:0000945!1.02e-07!24;CL:0000826!1.02e-07!24;CL:0000791!3.03e-07!18;CL:0000789!3.03e-07!18;CL:0002420!3.03e-07!18;CL:0002419!3.03e-07!18;CL:0000790!3.03e-07!18;CL:0000084!7.77e-07!25;CL:0000827!7.77e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.20e-14;33!CL:0002057;3.20e-14;33!CL:0000473;8.82e-14;39!CL:0000234;8.82e-14;39!CL:0000576;2.74e-13;48!CL:0002087;7.58e-12;104!CL:0000766;4.18e-09;69!CL:0000542;7.19e-09;53!CL:0000738;6.96e-08;136!CL:0000945;7.03e-08;24!CL:0000791;1.91e-07;18!CL:0000789;1.91e-07;18!CL:0002419;1.91e-07;18!CL:0000084;2.76e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,1.25e-37,115;CL:0002031,1.68e-35,120;CL:0000738,3.35e-31,136;CL:0002032,1.32e-24,161;CL:0000837,1.32e-24,161;CL:0000037,3.99e-24,168;CL:0002194,2.36e-22,59;CL:0000576,2.36e-22,59;CL:0000040,2.36e-22,59;CL:0000559,2.36e-22,59;CL:0000988,5.66e-22,177;CL:0000839,1.07e-21,66;CL:0002009,2.45e-21,61;CL:0000557,5.84e-20,67;CL:0000473,7.05e-20,48;CL:0000234,7.05e-20,48;CL:0000766,3.14e-18,72;CL:0000860,6.71e-18,42;CL:0002057,6.71e-18,42;CL:0000542,1.12e-14,53;CL:0000051,1.12e-14,53;CL:0000838,2.94e-14,52;CL:0000763,5.25e-11,108;CL:0000049,5.25e-11,108;CL:0000791,8.04e-08,18;CL:0000789,8.04e-08,18;CL:0002420,8.04e-08,18;CL:0002419,8.04e-08,18;CL:0000790,8.04e-08,18;CL:0000945,1.03e-07,24;CL:0000826,1.03e-07,24;CL:0000084,1.52e-07,25;CL:0000827,1.52e-07,25;CL:0000134,4.63e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;4.13e-13;42!CL:0000051;7.19e-09;53!CL:0000790;1.91e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.78e-22!102;UBERON:0003061!2.78e-22!102;UBERON:0002193!1.16e-21!112;UBERON:0002371!5.79e-15!80;UBERON:0002405!2.52e-14!115;UBERON:0001474!5.88e-12!86;UBERON:0004765!1.33e-10!101;UBERON:0001434!1.33e-10!101;UBERON:0007023!9.71e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.13e-27,98;UBERON:0003061,4.13e-27,98;UBERON:0002193,3.20e-26,108;UBERON:0002405,4.12e-21,93;UBERON:0002371,9.15e-19,76;UBERON:0001474,2.63e-15,82;UBERON:0004765,6.29e-13,90;UBERON:0001434,1.68e-12,100;UBERON:0007023,2.84e-07,114 | |||
|phase1_expression=1.45342703416445,0.642301571672949,1.26858963686374,1.0007329835313,1.78784437770915,1.74467704820074,0,0,0,0,0,0,0,0.247532705920093,0,1.34465029290355,0,0,0,0.369363174230364,0,0,0.85870796139317,0,0.125542639594803,7.56492716904717,6.56804715599566,6.21815172378066,1.57345710739562,2.68680578668049,2.63187409637329,0,0,0,0.542270404062111,0.710846162437108,8.51441274071057,1.66198622559563,1.00272223735071,1.30206522429511,9.40444991807682,9.06902264853143,7.21211589375722,5.96132778996215,4.91238726795452,4.60909716256851,3.0215774797739,2.05583944010913,1.23882548358041,33.6600099016916,12.5518746199259,26.249527517633,21.0294865249337,10.3277549373412,4.06279459783025,2.07066573496865,0.545812300115692,2.69668181334102,83.5609026172564,23.7487480036309,30.0488449125549,26.0582527147506,20.7442203926497,21.3112375266347,76.6152389979462,14.1846306172785,24.912889959823,24.6223691951608,17.7304192262868,21.2845067811014,121.079900526674,37.9325965067192,82.2802207346299,11.8302960334687,13.6066751977628,9.85395633889367,7.52601828681517,6.00707571366025,4.66104201421532,15.9607136495099,16.1122508531263,12.4211624559951,10.5597746676794,17.4764355603882,17.7901850772711,14.9355577898278,14.4142555332964,16.66782075868,17.1871666924064,12.4026988089597,1.1384259382189,1.76171156811282,1.14681968437569,2.64342657158052,1.12101712596307,5.53106578027662,1.7703879310245,1.57204305099666,1.85041349099558,28.7560772071966,7.82213439920617,10.8892995318989,19.4826728407911,30.8606965571931,15.0249012812167,25.4763978771164,21.1227013736712,27.4115424212945,35.7663205789665,17.265979983386,20.4499013161528,20.8658221729238,8.45233410023744,10.4340922954988,3.1360657141493,17.3363294327276,13.4127172760672,11.6833331464094,9.61474829674111,17.8396632021494,14.3238359848412,32.3153695112447,14.3046363123884,15.3583933385302,22.4875307794223,17.9950711553453,21.3493279199472,2.62088766192152,2.13952156626806,1.73789284659359,0,3.35350429851818,0.511450247374121,1.80719576192283,3.50936537445123,1.59331170856906,1.5905718941022,1.94653948121054,0.189069634328136,0,0.087834785693126,6.7454223881322,0.364295288292542,0.741568885568859,4.86821090482025,5.39802185627728,7.04677190749985,0,0,0,0,0,0,0,0,0,0,0,2.13459757612026,0,0.805658634218294,0.760272105718513,0,1.10298924103761,0,0.0892997282840798,0.22452937262617,1.12611480483322,0,0,0.183201743930407,0,0,0.436094052142534,1.98788780678127,0.759783069987479,1.58891016975863,0.286836620748814,2.4826786753885,0,0,0,1.55605517699883,0,0,0.302714855289863,0,0,0,0,0.597794722207204,0,0,0,1.63323337003915,0.122834317311768,2.27316718586684,35.6400857184616,11.3742787468136,1.82032272387605,0.718618141816238,0,0,0.554128230968366,2.19488810440419,1.5324389789951,6.76071265079686,0.113432183160021,0.538168907066586,0.427114777637135,1.05965950579781,0.300091096084402,0.92747276314595,1.28820270022815,1.30281799432113,0.168776332241266,0.487185025805993,1.26216887122057,1.56484827691909,3.71785930683267,0,0,0.847802961552438,3.09217365061275,2.72746120590835,2.29443676311203,0,0,0,0.10366105501537,0,0,14.0804579096834,9.00537313470039,1.38134921352481,3.71494342425583,3.60939740834793,0.354920400119532,0.168584690078102,0,0.110293972732394,0,0,0.404493924480493,0,0,0.738155454624648,0,1.6462960453256,0,7.60530208930985,5.89696330006576,5.31710916013264,0.441463099414651,8.24022538238861,0,0.329250856225877,0,0,0.277765335475589,0,0,0,0,0.117408694235822,3.75352764178792,1.38895653772983,1.90254152234598,0,0,8.37137820697151,3.51006397708857,6.68840230299277,0,4.19955320497149,4.11147782002921,0.0895585227028483,0.871901815541886,1.53353071666084,4.92663237895944,22.6284475413991,0.207328115540772,0.576479813667846,1.76739406796932,6.79427468926209,6.875791660049,8.20522130470329,3.4214489204541,5.2442021278695,10.812350082381,35.4424776461917,0,0.43596006883328,0,0.775630294546667,0,0.845302752556,6.91439103120663,5.2003718455683,0,0,0,0.714889968290738,0,0,0.325736184293735,0.355391948742546,0,4.22015127883421,4.35766729300147,1.49959486773086,6.08118903205952,6.52934218861764,4.21667878966063,0,0,0,0.868687840005475,0.61642896765115,0.537182889719687,6.61302349561811,3.54655368363469,2.37190332345469,2.31017465303547,0,0,0,0.167516265334349,0,0,0,0.828831026872071,0.613457458595699,0,0,1.24782516918484,0.535286966391485,0.315404830067869,0.702848489956279,0.601892199455438,0,0,0,0,1.65078867489357,0.391602314925481,0.343143423810856,1.86091223510599,3.23571301227925,2.77491650288955,0,0,0,1.48864684691266,0.460385919864187,0.561320188866147,1.28139149255701,2.04682899626681,1.93024705372329,0,1.69630663182921,0.887808626565635,3.69572202062141,4.67328986265259,2.20799719073923,1.20859449591622,1.60405176242628,0.0920809889358963,5.62590796006573,4.00600569614778,9.30983346211911,0.902399225814824,0.231046011313244,0,0,0.949964660035881,0,1.02056223165909,1.0795795805107,0,0.812839312631559,0,1.01950509218015,0,0,2.19259876645935,2.0914836081992,1.02580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| |||
|short_description=p1@RTP4 | |||
}} |
Revision as of 23:12, 12 September 2013
Short description: | p1@RTP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RTP4_5end |
Coexpression cluster: | C413_CD14_Smooth_gall_mesothelioma_meningioma_Fibroblast_Neutrophils |
Association with transcript: | 0bp_to_NM_022147, uc003frm.2_5end |
EntrezGene: | RTP4 |
HGNC: | 23992 |
UniProt: | Q96DX8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.13e-27 | 98 |
blood island | 4.13e-27 | 98 |
hemolymphoid system | 3.20e-26 | 108 |
immune system | 4.12e-21 | 93 |
bone marrow | 9.15e-19 | 76 |
bone element | 2.63e-15 | 82 |
skeletal element | 6.29e-13 | 90 |
skeletal system | 1.68e-12 | 100 |
adult organism | 2.84e-07 | 114 |
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