FFCP PHASE1:Mm9::chr12:60112983..60113021,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20334|HGNC=|MCL_coexpression_id=60|UniProt=Q01405,Q8C1E4|association_with_transcript=0bp_to_ENSMUST00000021375,ENSMUST00000134223,NM_009147,uc007npw.1_5end|description=CAGE_peak_2_at_Sec23a_5end|id=chr12:60112983..60113021,-|ontology_enrichment_celltype=CL:0000117!2.22e-13!23;CL:0000337!2.22e-13!23;CL:0000540!2.74e-09!33;CL:0000047!2.74e-09!33;CL:0000031!2.74e-09!33;CL:0000404!2.74e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.21e-13,23;CL:0000337,2.21e-13,23;CL:0000540,2.73e-09,33;CL:0000047,2.73e-09,33;CL:0000031,2.73e-09,33;CL:0000404,2.73e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!3.22e-20!63;UBERON:0001049!8.09e-20!52;UBERON:0005068!8.09e-20!52;UBERON:0006241!8.09e-20!52;UBERON:0007135!8.09e-20!52;UBERON:0003056!4.63e-19!49;UBERON:0000955!5.31e-19!50;UBERON:0006238!5.31e-19!50;UBERON:0002346!1.50e-18!71;UBERON:0003075!1.50e-18!71;UBERON:0007284!1.50e-18!71;UBERON:0002616!1.64e-18!49;UBERON:0001017!1.11e-17!73;UBERON:0005743!1.11e-17!73;UBERON:0000073!5.14e-17!75;UBERON:0001016!5.14e-17!75;UBERON:0002020!7.08e-17!34;UBERON:0003080!3.70e-16!40;UBERON:0002780!1.47e-15!39;UBERON:0001890!1.47e-15!39;UBERON:0006240!1.47e-15!39;UBERON:0002791!2.27e-14!29;UBERON:0003528!2.27e-14!29;UBERON:0001893!2.27e-14!29;UBERON:0004121!6.83e-14!102;UBERON:0000924!6.83e-14!102;UBERON:0006601!6.83e-14!102;UBERON:0000153!8.95e-14!94;UBERON:0007811!2.64e-13!86;UBERON:0000956!6.28e-10!21;UBERON:0001869!6.28e-10!21;UBERON:0000203!6.28e-10!21;UBERON:0000468!1.61e-08!333;UBERON:0002619!6.10e-08!17;UBERON:0002021!2.60e-07!10;UBERON:0000411!2.60e-07!10;UBERON:0001950!2.60e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.88e-21,64;UBERON:0003075,1.88e-21,64;UBERON:0007284,1.88e-21,64;UBERON:0000073,3.63e-21,54;UBERON:0001049,8.01e-20,52;UBERON:0005068,8.01e-20,52;UBERON:0006241,8.01e-20,52;UBERON:0007135,8.01e-20,52;UBERON:0003056,4.58e-19,49;UBERON:0001017,1.10e-17,73;UBERON:0010371,2.68e-17,73;UBERON:0000955,4.57e-17,47;UBERON:0006238,4.57e-17,47;UBERON:0001016,5.10e-17,75;UBERON:0002020,7.02e-17,34;UBERON:0010314,7.64e-17,92;UBERON:0002616,1.38e-16,46;UBERON:0003080,3.67e-16,40;UBERON:0002780,1.46e-15,39;UBERON:0001890,1.46e-15,39;UBERON:0006240,1.46e-15,39;UBERON:0004121,1.53e-15,95;UBERON:0000924,1.53e-15,95;UBERON:0006601,1.53e-15,95;UBERON:0003528,2.26e-14,29;UBERON:0002791,2.26e-14,29;UBERON:0001893,2.26e-14,29;UBERON:0000956,6.25e-10,21;UBERON:0001869,6.25e-10,21;UBERON:0000203,6.25e-10,21;UBERON:0000922,3.13e-08,320;UBERON:0002619,6.07e-08,17;UBERON:0002021,2.59e-07,10;UBERON:0000411,2.59e-07,10;UBERON:0001950,2.59e-07,10|phase1_expression=6.40595388419176,3.48975407639361,5.45999087267443,1.81478526784098,3.00537437967808,1.51091344720701,2.33612640595526,1.80772652818207,1.12630977721333,0,1.71217968225505,1.27635454392538,1.54080656938085,2.09808965805594,2.99798785634096,4.25198061518635,2.09868563438444,3.94327706697797,3.42786084014347,2.12194825899015,24.9176840142634,0.695036658406197,1.04479915655574,3.83981814704176,1.83527424853736,5.7423196411502,2.15380998079537,1.72376986148711,3.6104449696711,2.01624103807945,1.10865255327652,0.635030673459631,1.23012957516914,0,0.577703239502549,0.997407872150954,0.408338712524738,2.92972141515835,0.7813353445238,2.61761871986899,1.17646297606203,4.78131839470912,2.42755176515577,1.88845226963366,2.12891555560981,0.917733760808408,1.56478268869608,3.05235218932625,2.19686182734472,2.52758868796568,2.93971485413261,1.43752564364972,1.51004345451963,1.45072428402269,2.01656279485478,2.57259436035947,2.0057340795713,3.6097046459421,40.26097571106,37.0293685490423,51.3403436840005,2.37191172448392,0.889294796111139,0,0,0.7104801149461,2.39680088414724,1.15265491596466,32.4548486525535,41.5818290061607,41.0133674635195,35.1350710816678,32.4676755198872,48.8738288867667,34.4085240955469,67.1029714225315,82.5869107495415,46.222816386838,50.9973690410728,45.5007692669169,39.3396867490361,50.007683573449,45.2276458382237,54.587973173073,45.2282813419358,45.6674307484185,43.8504776861237,42.4990736481685,2.95332153999418,3.77857800533928,2.02905142091174,2.58127163094416,0.679971333707751,2.69851595818909,2.59910566979068,1.79210754838934,8.14577636764161,1.70430322578058,2.07828803682295,0.70667914902068,3.23939865486365,3.84979432242953,2.54805239706646,0,1.5154372870785,0.760079596425296,1.51657333504435,5.82337786567206,2.33044095282455,2.07818994690755,5.72501578328248,3.34912026143355,3.68984795609694,3.46662073271032,4.8211369925639,2.01066546127481,2.47194967734374,2.31358971071859,4.42305275974937,9.05894359705491,6.18356251689102,3.39412677194655,0,18.737971008739,20.1068838540917,2.55457055208591,1.91704199209472,0.599902730993408,1.65191295194984,49.7304922824011,43.9200578705881,55.1622605775475,57.188201343259,47.5630750634415,46.1289458922223,44.7785886067011,7.94347038032467,5.10068579501381,3.28539585963777,7.57590681191306,10.0192741081282,10.8053989083732,14.4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| ||
|EntrezGene=20334 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=Q01405,Q8C1E4 | |||
|association_with_transcript=0bp_to_ENSMUST00000021375,ENSMUST00000134223,NM_009147,uc007npw.1_5end | |||
|description=CAGE_peak_2_at_Sec23a_5end | |||
|id=chr12:60112983..60113021,- | |||
|ontology_enrichment_celltype=CL:0000117!2.22e-13!23;CL:0000337!2.22e-13!23;CL:0000540!2.74e-09!33;CL:0000047!2.74e-09!33;CL:0000031!2.74e-09!33;CL:0000404!2.74e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.21e-13,23;CL:0000337,2.21e-13,23;CL:0000540,2.73e-09,33;CL:0000047,2.73e-09,33;CL:0000031,2.73e-09,33;CL:0000404,2.73e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!3.22e-20!63;UBERON:0001049!8.09e-20!52;UBERON:0005068!8.09e-20!52;UBERON:0006241!8.09e-20!52;UBERON:0007135!8.09e-20!52;UBERON:0003056!4.63e-19!49;UBERON:0000955!5.31e-19!50;UBERON:0006238!5.31e-19!50;UBERON:0002346!1.50e-18!71;UBERON:0003075!1.50e-18!71;UBERON:0007284!1.50e-18!71;UBERON:0002616!1.64e-18!49;UBERON:0001017!1.11e-17!73;UBERON:0005743!1.11e-17!73;UBERON:0000073!5.14e-17!75;UBERON:0001016!5.14e-17!75;UBERON:0002020!7.08e-17!34;UBERON:0003080!3.70e-16!40;UBERON:0002780!1.47e-15!39;UBERON:0001890!1.47e-15!39;UBERON:0006240!1.47e-15!39;UBERON:0002791!2.27e-14!29;UBERON:0003528!2.27e-14!29;UBERON:0001893!2.27e-14!29;UBERON:0004121!6.83e-14!102;UBERON:0000924!6.83e-14!102;UBERON:0006601!6.83e-14!102;UBERON:0000153!8.95e-14!94;UBERON:0007811!2.64e-13!86;UBERON:0000956!6.28e-10!21;UBERON:0001869!6.28e-10!21;UBERON:0000203!6.28e-10!21;UBERON:0000468!1.61e-08!333;UBERON:0002619!6.10e-08!17;UBERON:0002021!2.60e-07!10;UBERON:0000411!2.60e-07!10;UBERON:0001950!2.60e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.88e-21,64;UBERON:0003075,1.88e-21,64;UBERON:0007284,1.88e-21,64;UBERON:0000073,3.63e-21,54;UBERON:0001049,8.01e-20,52;UBERON:0005068,8.01e-20,52;UBERON:0006241,8.01e-20,52;UBERON:0007135,8.01e-20,52;UBERON:0003056,4.58e-19,49;UBERON:0001017,1.10e-17,73;UBERON:0010371,2.68e-17,73;UBERON:0000955,4.57e-17,47;UBERON:0006238,4.57e-17,47;UBERON:0001016,5.10e-17,75;UBERON:0002020,7.02e-17,34;UBERON:0010314,7.64e-17,92;UBERON:0002616,1.38e-16,46;UBERON:0003080,3.67e-16,40;UBERON:0002780,1.46e-15,39;UBERON:0001890,1.46e-15,39;UBERON:0006240,1.46e-15,39;UBERON:0004121,1.53e-15,95;UBERON:0000924,1.53e-15,95;UBERON:0006601,1.53e-15,95;UBERON:0003528,2.26e-14,29;UBERON:0002791,2.26e-14,29;UBERON:0001893,2.26e-14,29;UBERON:0000956,6.25e-10,21;UBERON:0001869,6.25e-10,21;UBERON:0000203,6.25e-10,21;UBERON:0000922,3.13e-08,320;UBERON:0002619,6.07e-08,17;UBERON:0002021,2.59e-07,10;UBERON:0000411,2.59e-07,10;UBERON:0001950,2.59e-07,10 | |||
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| |||
|short_description=p2@Sec23a | |||
}} |
Revision as of 23:00, 12 September 2013
Short description: | p2@Sec23a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Sec23a_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000021375, ENSMUST00000134223, NM_009147, uc007npw.1_5end |
EntrezGene: | Sec23a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.21e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.21e-13 | 23 |
neuron | 2.73e-09 | 33 |
neuronal stem cell | 2.73e-09 | 33 |
neuroblast | 2.73e-09 | 33 |
electrically signaling cell | 2.73e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.88e-21 | 64 |
neural plate | 1.88e-21 | 64 |
presumptive neural plate | 1.88e-21 | 64 |
regional part of nervous system | 3.63e-21 | 54 |
neural tube | 8.01e-20 | 52 |
neural rod | 8.01e-20 | 52 |
future spinal cord | 8.01e-20 | 52 |
neural keel | 8.01e-20 | 52 |
pre-chordal neural plate | 4.58e-19 | 49 |
central nervous system | 1.10e-17 | 73 |
ecto-epithelium | 2.68e-17 | 73 |
brain | 4.57e-17 | 47 |
future brain | 4.57e-17 | 47 |
nervous system | 5.10e-17 | 75 |
gray matter | 7.02e-17 | 34 |
structure with developmental contribution from neural crest | 7.64e-17 | 92 |
regional part of brain | 1.38e-16 | 46 |
anterior neural tube | 3.67e-16 | 40 |
regional part of forebrain | 1.46e-15 | 39 |
forebrain | 1.46e-15 | 39 |
future forebrain | 1.46e-15 | 39 |
ectoderm-derived structure | 1.53e-15 | 95 |
ectoderm | 1.53e-15 | 95 |
presumptive ectoderm | 1.53e-15 | 95 |
brain grey matter | 2.26e-14 | 29 |
regional part of telencephalon | 2.26e-14 | 29 |
telencephalon | 2.26e-14 | 29 |
cerebral cortex | 6.25e-10 | 21 |
cerebral hemisphere | 6.25e-10 | 21 |
pallium | 6.25e-10 | 21 |
embryo | 3.13e-08 | 320 |
regional part of cerebral cortex | 6.07e-08 | 17 |
occipital lobe | 2.59e-07 | 10 |
visual cortex | 2.59e-07 | 10 |
neocortex | 2.59e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.