FFCP PHASE1:Mm9::chr12:42212567..42212582,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=16981|HGNC=|MCL_coexpression_id=1|UniProt=Q8CBC6|association_with_transcript=-229bp_to_ENSMUST00000043884,NM_010733,uc007nln.1_5end|description=CAGE_peak_2_at_Lrrn3_5end|id=chr12:42212567..42212582,-|ontology_enrichment_celltype=CL:0000540!1.26e-12!33;CL:0000047!1.26e-12!33;CL:0000031!1.26e-12!33;CL:0000404!1.26e-12!33;CL:0000117!2.12e-11!23;CL:0000337!2.12e-11!23;CL:0000393!4.83e-10!39;CL:0000211!4.83e-10!39;CL:0000221!2.84e-09!44;CL:0000133!2.84e-09!44;CL:0002319!4.99e-09!43;CL:0000055!1.39e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.55e-13,23;CL:0000337,1.55e-13,23;CL:0000540,9.66e-13,33;CL:0000047,9.66e-13,33;CL:0000031,9.66e-13,33;CL:0000404,9.66e-13,33;CL:0000393,5.02e-09,39;CL:0000211,5.02e-09,39;CL:0000221,1.53e-08,44;CL:0000133,1.53e-08,44;CL:0002319,2.92e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.88e-29!102;UBERON:0000924!3.88e-29!102;UBERON:0006601!3.88e-29!102;UBERON:0002346!4.74e-28!71;UBERON:0003075!4.74e-28!71;UBERON:0007284!4.74e-28!71;UBERON:0001017!1.91e-27!73;UBERON:0005743!1.91e-27!73;UBERON:0000073!5.06e-27!75;UBERON:0001016!5.06e-27!75;UBERON:0000033!1.57e-24!63;UBERON:0001049!2.83e-22!52;UBERON:0005068!2.83e-22!52;UBERON:0006241!2.83e-22!52;UBERON:0007135!2.83e-22!52;UBERON:0000955!1.15e-21!50;UBERON:0006238!1.15e-21!50;UBERON:0003056!6.20e-21!49;UBERON:0002616!6.66e-21!49;UBERON:0003080!5.11e-18!40;UBERON:0002780!2.05e-17!39;UBERON:0001890!2.05e-17!39;UBERON:0006240!2.05e-17!39;UBERON:0002020!4.72e-16!34;UBERON:0002791!1.44e-13!29;UBERON:0003528!1.44e-13!29;UBERON:0001893!1.44e-13!29;UBERON:0000153!4.48e-11!94;UBERON:0007811!9.46e-11!86;UBERON:0000025!2.08e-09!114;UBERON:0000956!2.43e-09!21;UBERON:0001869!2.43e-09!21;UBERON:0000203!2.43e-09!21;UBERON:0000468!1.49e-08!333;UBERON:0004111!1.58e-08!122;UBERON:0002021!3.57e-08!10;UBERON:0000411!3.57e-08!10;UBERON:0001950!3.57e-08!10;UBERON:0002619!9.44e-08!17;UBERON:0000922!1.95e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.07e-29,73;UBERON:0002346,1.53e-29,64;UBERON:0003075,1.53e-29,64;UBERON:0007284,1.53e-29,64;UBERON:0001016,6.01e-29,75;UBERON:0000073,6.94e-29,54;UBERON:0004121,1.41e-27,95;UBERON:0000924,1.41e-27,95;UBERON:0006601,1.41e-27,95;UBERON:0001049,3.01e-27,52;UBERON:0005068,3.01e-27,52;UBERON:0006241,3.01e-27,52;UBERON:0007135,3.01e-27,52;UBERON:0010371,4.58e-26,73;UBERON:0003056,6.94e-26,49;UBERON:0000955,3.52e-24,47;UBERON:0006238,3.52e-24,47;UBERON:0010314,9.75e-24,92;UBERON:0002616,2.89e-23,46;UBERON:0003080,2.46e-22,40;UBERON:0002780,1.35e-21,39;UBERON:0001890,1.35e-21,39;UBERON:0006240,1.35e-21,39;UBERON:0002020,6.00e-20,34;UBERON:0003528,6.57e-17,29;UBERON:0002791,6.57e-17,29;UBERON:0001893,6.57e-17,29;UBERON:0000956,1.01e-11,21;UBERON:0001869,1.01e-11,21;UBERON:0000203,1.01e-11,21;UBERON:0002619,8.74e-10,17;UBERON:0002021,1.30e-09,10;UBERON:0000411,1.30e-09,10;UBERON:0001950,1.30e-09,10;UBERON:0000025,1.06e-07,114;UBERON:0004111,5.48e-07,122|phase1_expression=7.68714466103011,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0.333109761815663,0.202475267389826,0,0,0.411343300817216,0,2.04103896362567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.709638518536602,0.183546752161682,0,0.65407546914134,0,0,0.55994568650145,1.43752564364972,0,0,0,0.257259436035947,0.286533439938757,0,4.04632921719196,3.70293685490423,4.43681982454325,0,0,0,0,0,0.299600110518405,0.384218305321555,3.11068836925433,3.10513658162888,2.3135745748652,2.57085885963423,3.3130281142742,3.91970557487853,2.68367318851062,1.83843757322004,7.70811166995721,7.40586560894089,8.44835932909339,4.61602007055678,6.31264740856627,4.68822033501084,4.4669279840221,5.06486349028512,6.72312290217964,9.72274332063103,7.83044244395066,5.96478226640962,0.302904773332736,1.20914496170857,0.289864488701678,1.72084775396277,0,0,0,0,1.26399978118577,0,0.259786004602869,0,2.25349471642689,0,0,0,0,0,0,0.11418387971906,0.517875767294343,5.93768556259299,1.56136794089522,2.74018930480927,1.61430848079241,3.16517545160507,4.11560474974967,2.76466500925286,0,0.433798070759735,0,0.323533699894818,0.441683036920787,0,0,9.36898550436951,7.95897485891129,0.255457055208591,0,0,0,7.48953197024113,7.32000964509802,11.5602003943835,13.7321212951898,12.2743419518559,10.8049783170971,11.6813709408785,1.62942982160506,0,0,1.26265113531884,1.43132487258974,1.37941262660084,2.88099407688559,3.76762044589288,3.46986145671772,5.12454881139399,4.59138450342671,4.39795730256327,0.646703978798527,0.756424320671277,1.40760899331159,1.31517439456545,1.94633074457919,0.348252166522167,1.23469281844766,1.19420560091096,0,0,0.284163499395593,1.24275463521301,0.938104239924385,1.44049649168812,0.946978942340841,0.393528463494808,1.23413690309903,1.16266972375204,0.268273401399619,0.934122738937356,0.329119699826961,0,0.162137619091711,0,0,0.134206418760372,13.8791366052324,16.3618333683062,0,0,1.70630600428187,2.55460339046482,0.902072229254653,1.00841762311671,0,0.190225626112559,0,0.329397909448022,0,0.198956472041151,0.19496408711912,0,0.432276099749388,0.199141273254367,0.189667900953082,0.342745537829186,0,0.610953983535943,0.193952487167626,0.420814919341911,0.316182685621286,0.147610147979602,0.31399745568275,0.123397163921801,0,0.500535317148282,0.393117990226406,0.449724224769707,0.608580364165509,0,0.25462585178142,0,0.162135226775035,0,1.43768206527355,0.744281895337007,0,0,0.358794827043824,0,2.21703828199926,0.947457058852424,3.09633455239849,1.18821560042632,1.87752198630802,0.502518772325447,0.952174563544055,0.390267295715598,1.7339865851681,1.99318220683897,0.956728611944923,2.78567635016755,1.03610989119537,0.867894351489069,0,0,0,0,4.49541651965817,5.86058432961016,0,0.252470927204373,0.94652465824877,0.780877488593277,1.93881057959519,2.86762557543062,3.7875774594007,3.11384183867716,0.404810701674894,0.876767573733936,2.76701444562566,17.9939937196212,0.709700426041343,1.06839362200353,0.977321756121456,0.659880491890142,0,0.728341908464944,0,0.377210159511796,0.295301892880773,0.307435147943927,0,0,0,0.316036757935816,0,0,1.70219802876894,2.16073312837572,1.29358683782755,2.7863814554107,4.61084607469911,5.35106452806212,5.26556865926787,3.04464949114599,0,0,0,1.48397627647332,0.645857706783622,0.542816324353403,0.716234064018819,0,0,6.30446026835733,0.341741761595705,2.06386867963222,1.85194527369712,0.376736914009382,0.410082683163076,0.228778173206523,0,0,0.138199973804424,0.954670618015114,1.73984796469624,1.01659733563424,1.08005340821801,1.46361807210128,1.31017538247707,1.07891477107857,0.826534557253359,0.26175594198403,0.259229946583586,0,0,1.49516546043979,1.32366792365678,3.11121901350476,2.19571699912143,3.21016638432478,2.93393096614385,0.651021924219751,0.419437377702843,0,0,0.316011120628178,0,0.308132871494482,0.25984164595559,0,0.39736270956253,0,0,0,0,0.100826185136841,0,0.0962118416403295,0.233753804363138,0.906921534460845,0,0,0,0.386379188064381,0.375364950902364,0.183151624267265,0,0,14.6835479080437,13.8097570952153,19.4784474569395,12.8889886757766,10.2762377965596,13.5970901530146,12.1504050041725,17.5625269257446,16.3131267234314,11.39072685854,0.207574695168353,1.19707462020309,2.73173769206615,2.18796045361465,1.04806581313991,1.10306105070008,2.44471400581777,1.85431551515005,1.28367683836726,2.77966932940177,2.5347929989024,2.45214243801899,3.46473577638565,2.11283002936069,2.69946704091382,2.85776214769844,1.85414921511769,1.35036454324594,2.06042950401653,2.20798380201596,2.40008476669791,1.24233064311536,1.43061713968393,1.88950341622027,2.25862512996793,1.94613598150856,1.28049581010941,1.8414879800649,1.08643291076689,3.36685362994643,1.54225523561426,2.26560309463796,0.409231043169689,1.85924209423159,2.50778594275484,1.99848462350357,2.57324769289949,2.36358159453128,0.765153328275374,0,0|short_description=p2@Lrrn3}} | ||
|EntrezGene=16981 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8CBC6 | |||
|association_with_transcript=-229bp_to_ENSMUST00000043884,NM_010733,uc007nln.1_5end | |||
|description=CAGE_peak_2_at_Lrrn3_5end | |||
|id=chr12:42212567..42212582,- | |||
|ontology_enrichment_celltype=CL:0000540!1.26e-12!33;CL:0000047!1.26e-12!33;CL:0000031!1.26e-12!33;CL:0000404!1.26e-12!33;CL:0000117!2.12e-11!23;CL:0000337!2.12e-11!23;CL:0000393!4.83e-10!39;CL:0000211!4.83e-10!39;CL:0000221!2.84e-09!44;CL:0000133!2.84e-09!44;CL:0002319!4.99e-09!43;CL:0000055!1.39e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.55e-13,23;CL:0000337,1.55e-13,23;CL:0000540,9.66e-13,33;CL:0000047,9.66e-13,33;CL:0000031,9.66e-13,33;CL:0000404,9.66e-13,33;CL:0000393,5.02e-09,39;CL:0000211,5.02e-09,39;CL:0000221,1.53e-08,44;CL:0000133,1.53e-08,44;CL:0002319,2.92e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.88e-29!102;UBERON:0000924!3.88e-29!102;UBERON:0006601!3.88e-29!102;UBERON:0002346!4.74e-28!71;UBERON:0003075!4.74e-28!71;UBERON:0007284!4.74e-28!71;UBERON:0001017!1.91e-27!73;UBERON:0005743!1.91e-27!73;UBERON:0000073!5.06e-27!75;UBERON:0001016!5.06e-27!75;UBERON:0000033!1.57e-24!63;UBERON:0001049!2.83e-22!52;UBERON:0005068!2.83e-22!52;UBERON:0006241!2.83e-22!52;UBERON:0007135!2.83e-22!52;UBERON:0000955!1.15e-21!50;UBERON:0006238!1.15e-21!50;UBERON:0003056!6.20e-21!49;UBERON:0002616!6.66e-21!49;UBERON:0003080!5.11e-18!40;UBERON:0002780!2.05e-17!39;UBERON:0001890!2.05e-17!39;UBERON:0006240!2.05e-17!39;UBERON:0002020!4.72e-16!34;UBERON:0002791!1.44e-13!29;UBERON:0003528!1.44e-13!29;UBERON:0001893!1.44e-13!29;UBERON:0000153!4.48e-11!94;UBERON:0007811!9.46e-11!86;UBERON:0000025!2.08e-09!114;UBERON:0000956!2.43e-09!21;UBERON:0001869!2.43e-09!21;UBERON:0000203!2.43e-09!21;UBERON:0000468!1.49e-08!333;UBERON:0004111!1.58e-08!122;UBERON:0002021!3.57e-08!10;UBERON:0000411!3.57e-08!10;UBERON:0001950!3.57e-08!10;UBERON:0002619!9.44e-08!17;UBERON:0000922!1.95e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.07e-29,73;UBERON:0002346,1.53e-29,64;UBERON:0003075,1.53e-29,64;UBERON:0007284,1.53e-29,64;UBERON:0001016,6.01e-29,75;UBERON:0000073,6.94e-29,54;UBERON:0004121,1.41e-27,95;UBERON:0000924,1.41e-27,95;UBERON:0006601,1.41e-27,95;UBERON:0001049,3.01e-27,52;UBERON:0005068,3.01e-27,52;UBERON:0006241,3.01e-27,52;UBERON:0007135,3.01e-27,52;UBERON:0010371,4.58e-26,73;UBERON:0003056,6.94e-26,49;UBERON:0000955,3.52e-24,47;UBERON:0006238,3.52e-24,47;UBERON:0010314,9.75e-24,92;UBERON:0002616,2.89e-23,46;UBERON:0003080,2.46e-22,40;UBERON:0002780,1.35e-21,39;UBERON:0001890,1.35e-21,39;UBERON:0006240,1.35e-21,39;UBERON:0002020,6.00e-20,34;UBERON:0003528,6.57e-17,29;UBERON:0002791,6.57e-17,29;UBERON:0001893,6.57e-17,29;UBERON:0000956,1.01e-11,21;UBERON:0001869,1.01e-11,21;UBERON:0000203,1.01e-11,21;UBERON:0002619,8.74e-10,17;UBERON:0002021,1.30e-09,10;UBERON:0000411,1.30e-09,10;UBERON:0001950,1.30e-09,10;UBERON:0000025,1.06e-07,114;UBERON:0004111,5.48e-07,122 | |||
|phase1_expression=7.68714466103011,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0.333109761815663,0.202475267389826,0,0,0.411343300817216,0,2.04103896362567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.709638518536602,0.183546752161682,0,0.65407546914134,0,0,0.55994568650145,1.43752564364972,0,0,0,0.257259436035947,0.286533439938757,0,4.04632921719196,3.70293685490423,4.43681982454325,0,0,0,0,0,0.299600110518405,0.384218305321555,3.11068836925433,3.10513658162888,2.3135745748652,2.57085885963423,3.3130281142742,3.91970557487853,2.68367318851062,1.83843757322004,7.70811166995721,7.40586560894089,8.44835932909339,4.61602007055678,6.31264740856627,4.68822033501084,4.4669279840221,5.06486349028512,6.72312290217964,9.72274332063103,7.83044244395066,5.96478226640962,0.302904773332736,1.20914496170857,0.289864488701678,1.72084775396277,0,0,0,0,1.26399978118577,0,0.259786004602869,0,2.25349471642689,0,0,0,0,0,0,0.11418387971906,0.517875767294343,5.93768556259299,1.56136794089522,2.74018930480927,1.61430848079241,3.16517545160507,4.11560474974967,2.76466500925286,0,0.433798070759735,0,0.323533699894818,0.441683036920787,0,0,9.36898550436951,7.95897485891129,0.255457055208591,0,0,0,7.48953197024113,7.32000964509802,11.5602003943835,13.7321212951898,12.2743419518559,10.8049783170971,11.6813709408785,1.62942982160506,0,0,1.26265113531884,1.43132487258974,1.37941262660084,2.88099407688559,3.76762044589288,3.46986145671772,5.12454881139399,4.59138450342671,4.39795730256327,0.646703978798527,0.756424320671277,1.40760899331159,1.31517439456545,1.94633074457919,0.348252166522167,1.23469281844766,1.19420560091096,0,0,0.284163499395593,1.24275463521301,0.938104239924385,1.44049649168812,0.946978942340841,0.393528463494808,1.23413690309903,1.16266972375204,0.268273401399619,0.934122738937356,0.329119699826961,0,0.162137619091711,0,0,0.134206418760372,13.8791366052324,16.3618333683062,0,0,1.70630600428187,2.55460339046482,0.902072229254653,1.00841762311671,0,0.190225626112559,0,0.329397909448022,0,0.198956472041151,0.19496408711912,0,0.432276099749388,0.199141273254367,0.189667900953082,0.342745537829186,0,0.610953983535943,0.193952487167626,0.420814919341911,0.316182685621286,0.147610147979602,0.31399745568275,0.123397163921801,0,0.500535317148282,0.393117990226406,0.449724224769707,0.608580364165509,0,0.25462585178142,0,0.162135226775035,0,1.43768206527355,0.744281895337007,0,0,0.358794827043824,0,2.21703828199926,0.947457058852424,3.09633455239849,1.18821560042632,1.87752198630802,0.502518772325447,0.952174563544055,0.390267295715598,1.7339865851681,1.99318220683897,0.956728611944923,2.78567635016755,1.03610989119537,0.867894351489069,0,0,0,0,4.49541651965817,5.86058432961016,0,0.252470927204373,0.94652465824877,0.780877488593277,1.93881057959519,2.86762557543062,3.7875774594007,3.11384183867716,0.404810701674894,0.876767573733936,2.76701444562566,17.9939937196212,0.709700426041343,1.06839362200353,0.977321756121456,0.659880491890142,0,0.728341908464944,0,0.377210159511796,0.295301892880773,0.307435147943927,0,0,0,0.316036757935816,0,0,1.70219802876894,2.16073312837572,1.29358683782755,2.7863814554107,4.61084607469911,5.35106452806212,5.26556865926787,3.04464949114599,0,0,0,1.48397627647332,0.645857706783622,0.542816324353403,0.716234064018819,0,0,6.30446026835733,0.341741761595705,2.06386867963222,1.85194527369712,0.376736914009382,0.410082683163076,0.228778173206523,0,0,0.138199973804424,0.954670618015114,1.73984796469624,1.01659733563424,1.08005340821801,1.46361807210128,1.31017538247707,1.07891477107857,0.826534557253359,0.26175594198403,0.259229946583586,0,0,1.49516546043979,1.32366792365678,3.11121901350476,2.19571699912143,3.21016638432478,2.93393096614385,0.651021924219751,0.419437377702843,0,0,0.316011120628178,0,0.308132871494482,0.25984164595559,0,0.39736270956253,0,0,0,0,0.100826185136841,0,0.0962118416403295,0.233753804363138,0.906921534460845,0,0,0,0.386379188064381,0.375364950902364,0.183151624267265,0,0,14.6835479080437,13.8097570952153,19.4784474569395,12.8889886757766,10.2762377965596,13.5970901530146,12.1504050041725,17.5625269257446,16.3131267234314,11.39072685854,0.207574695168353,1.19707462020309,2.73173769206615,2.18796045361465,1.04806581313991,1.10306105070008,2.44471400581777,1.85431551515005,1.28367683836726,2.77966932940177,2.5347929989024,2.45214243801899,3.46473577638565,2.11283002936069,2.69946704091382,2.85776214769844,1.85414921511769,1.35036454324594,2.06042950401653,2.20798380201596,2.40008476669791,1.24233064311536,1.43061713968393,1.88950341622027,2.25862512996793,1.94613598150856,1.28049581010941,1.8414879800649,1.08643291076689,3.36685362994643,1.54225523561426,2.26560309463796,0.409231043169689,1.85924209423159,2.50778594275484,1.99848462350357,2.57324769289949,2.36358159453128,0.765153328275374,0,0 | |||
|short_description=p2@Lrrn3 | |||
}} |
Revision as of 22:50, 12 September 2013
Short description: | p2@Lrrn3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Lrrn3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -229bp_to_ENSMUST00000043884, NM_010733, uc007nln.1_5end |
EntrezGene: | Lrrn3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.55e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.55e-13 | 23 |
neuron | 9.66e-13 | 33 |
neuronal stem cell | 9.66e-13 | 33 |
neuroblast | 9.66e-13 | 33 |
electrically signaling cell | 9.66e-13 | 33 |
electrically responsive cell | 5.02e-09 | 39 |
electrically active cell | 5.02e-09 | 39 |
ectodermal cell | 1.53e-08 | 44 |
neurectodermal cell | 1.53e-08 | 44 |
neural cell | 2.92e-08 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.