FFCP PHASE1:Hg19::chr3:147123837..147123848,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84107|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20393|TSSclassifier=S|UniProt=C9JD04|association_with_transcript=71bp_to_ENST00000462748_5end|coexpression_cluster_id=C4292|description=CAGE_peak_7_at_ZIC4_5end|id=chr3:147123837..147123848,-|ontology_enrichment_celltype=CL:0000708!5.28e-26!3;CL:0000064!1.46e-25!3;CL:0005012!1.46e-25!3;CL:0000067!1.46e-25!3;CL:0002304!1.46e-25!3;CL:0002575!2.06e-18!2;CL:0002603!2.03e-12!3;CL:0000327!5.55e-10!14;CL:0000342!1.76e-09!1;CL:0002565!1.76e-09!1;CL:0000669!6.74e-08!5;CL:0000075!1.60e-07!27;CL:0000710!8.38e-07!20|ontology_enrichment_celltype_v019=CL:0002575;2.01e-34;2!CL:0002603;5.44e-23;3!CL:0000708;8.98e-23;3!CL:0000669;9.11e-18;4!CL:0000327;1.40e-10;15!CL:0000128;1.99e-10;7!CL:0000126;1.99e-10;7!CL:0000127;1.99e-10;7!CL:0000214;5.80e-07;3!CL:0000064;9.11e-07;3!CL:0000067;9.11e-07;3!CL:0005012;9.11e-07;3!CL:0002304;9.11e-07;3!CL:0000346;9.11e-07;3!CL:1000428;9.11e-07;3!CL:0002590;9.11e-07;3|ontology_enrichment_celltype_v019_2=CL:0002575,1.84e-34,2;CL:0002603,5.15e-23,3;CL:0000708,6.44e-23,3;CL:0000669,8.74e-18,4;CL:0000327,1.27e-10,15;CL:0000128,1.94e-10,7;CL:0000126,1.94e-10,7;CL:0000127,1.94e-10,7;CL:0002453,1.94e-10,7;CL:0000214,5.80e-07,3;CL:0000064,8.15e-07,3;CL:0000067,8.15e-07,3;CL:0005012,8.15e-07,3;CL:0002304,8.15e-07,3;CL:0002590,9.64e-07,3|ontology_enrichment_development_v019=UBERON:0006215;9.11e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000488!2.89e-33!4;UBERON:0002680!1.80e-32!9;UBERON:0001895!1.80e-32!9;UBERON:0010092!1.80e-32!9;UBERON:0002200!1.15e-26!11;UBERON:0006876!1.15e-26!11;UBERON:0003210!5.28e-26!3;UBERON:0001778!1.46e-25!3;UBERON:0001775!1.46e-25!3;UBERON:0004733!2.84e-24!12;UBERON:0002028!2.84e-24!12;UBERON:0007277!2.84e-24!12;UBERON:0002037!1.47e-22!6;UBERON:0006215!1.47e-22!6;UBERON:0004732!2.23e-22!13;UBERON:0002203!2.72e-22!6;UBERON:0001768!2.72e-22!6;UBERON:0003076!2.40e-19!15;UBERON:0003057!2.40e-19!15;UBERON:0007625!1.05e-18!11;UBERON:0003075!3.82e-16!86;UBERON:0007284!3.82e-16!86;UBERON:0002346!2.51e-15!90;UBERON:0001801!1.12e-14!14;UBERON:0000033!3.45e-12!123;UBERON:0002616!3.71e-12!59;UBERON:0000988!1.21e-11!3;UBERON:0000153!1.65e-11!129;UBERON:0007811!1.65e-11!129;UBERON:0004121!6.34e-11!169;UBERON:0000019!8.82e-11!19;UBERON:0000047!8.82e-11!19;UBERON:0004088!8.82e-11!19;UBERON:0003072!8.82e-11!19;UBERON:0003071!8.82e-11!19;UBERON:0004128!8.82e-11!19;UBERON:0000924!1.31e-10!173;UBERON:0006601!1.31e-10!173;UBERON:0000970!3.10e-10!20;UBERON:0000955!4.91e-10!69;UBERON:0006238!4.91e-10!69;UBERON:0005085!7.44e-10!29;UBERON:0002104!9.70e-10!21;UBERON:0001456!9.70e-10!21;UBERON:0002506!1.76e-09!1;UBERON:0001769!1.76e-09!1;UBERON:0000020!7.06e-09!23;UBERON:0001032!1.68e-08!24;UBERON:0004456!1.68e-08!24;UBERON:0000063!1.74e-08!97;UBERON:0001017!3.04e-08!82;UBERON:0001049!4.90e-08!57;UBERON:0005068!4.90e-08!57;UBERON:0006241!4.90e-08!57;UBERON:0007135!4.90e-08!57;UBERON:0005743!8.46e-08!86;UBERON:0005284!1.32e-07!5;UBERON:0000119!2.96e-07!312;UBERON:0000073!6.21e-07!94;UBERON:0001016!6.21e-07!94;UBERON:0000064!7.93e-07!219|ontology_enrichment_uberon_v019=UBERON:0002037;2.63e-25;6!UBERON:0003210;8.98e-23;3!UBERON:0002680;4.06e-17;9!UBERON:0001895;4.06e-17;9!UBERON:0004733;5.24e-13;12!UBERON:0002028;5.24e-13;12!UBERON:0004732;4.69e-12;13!UBERON:0006915;5.80e-07;3!UBERON:0007616;5.80e-07;3!UBERON:0002217;5.80e-07;3!UBERON:0002018;5.80e-07;3!UBERON:0002369;6.50e-07;3!UBERON:0001235;6.50e-07;3!UBERON:0006858;6.50e-07;3!UBERON:0006876;6.74e-07;11!UBERON:0000412;9.11e-07;3!UBERON:0001778;9.11e-07;3!UBERON:0001992;9.11e-07;3!UBERON:0001775;9.11e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.99e-25,6;UBERON:0006215,2.99e-25,6;UBERON:0003210,6.44e-23,3;UBERON:0002680,4.41e-17,9;UBERON:0001895,4.41e-17,9;UBERON:0010092,4.41e-17,9;UBERON:0004733,5.58e-13,12;UBERON:0002028,5.58e-13,12;UBERON:0007277,5.58e-13,12;UBERON:0004732,4.96e-12,13;UBERON:0003076,1.65e-10,15;UBERON:0003057,1.65e-10,15;UBERON:0006915,5.80e-07,3;UBERON:0007616,5.80e-07,3;UBERON:0002217,5.80e-07,3;UBERON:0002018,5.80e-07,3;UBERON:0002369,6.50e-07,3;UBERON:0001235,6.50e-07,3;UBERON:0006858,6.50e-07,3;UBERON:0006876,6.54e-07,11;UBERON:0001778,8.15e-07,3;UBERON:0001775,8.15e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0780264519197,0,1.88072832886853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89069634328136,0.665188192387692,0.527008714158756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605429710579726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84107 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20393 | |||
|TSSclassifier=S | |||
|UniProt=C9JD04 | |||
|association_with_transcript=71bp_to_ENST00000462748_5end | |||
|coexpression_cluster_id=C4292 | |||
|description=CAGE_peak_7_at_ZIC4_5end | |||
|id=chr3:147123837..147123848,- | |||
|ontology_enrichment_celltype=CL:0000708!5.28e-26!3;CL:0000064!1.46e-25!3;CL:0005012!1.46e-25!3;CL:0000067!1.46e-25!3;CL:0002304!1.46e-25!3;CL:0002575!2.06e-18!2;CL:0002603!2.03e-12!3;CL:0000327!5.55e-10!14;CL:0000342!1.76e-09!1;CL:0002565!1.76e-09!1;CL:0000669!6.74e-08!5;CL:0000075!1.60e-07!27;CL:0000710!8.38e-07!20 | |||
|ontology_enrichment_celltype_v019=CL:0002575;2.01e-34;2!CL:0002603;5.44e-23;3!CL:0000708;8.98e-23;3!CL:0000669;9.11e-18;4!CL:0000327;1.40e-10;15!CL:0000128;1.99e-10;7!CL:0000126;1.99e-10;7!CL:0000127;1.99e-10;7!CL:0000214;5.80e-07;3!CL:0000064;9.11e-07;3!CL:0000067;9.11e-07;3!CL:0005012;9.11e-07;3!CL:0002304;9.11e-07;3!CL:0000346;9.11e-07;3!CL:1000428;9.11e-07;3!CL:0002590;9.11e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002575,1.84e-34,2;CL:0002603,5.15e-23,3;CL:0000708,6.44e-23,3;CL:0000669,8.74e-18,4;CL:0000327,1.27e-10,15;CL:0000128,1.94e-10,7;CL:0000126,1.94e-10,7;CL:0000127,1.94e-10,7;CL:0002453,1.94e-10,7;CL:0000214,5.80e-07,3;CL:0000064,8.15e-07,3;CL:0000067,8.15e-07,3;CL:0005012,8.15e-07,3;CL:0002304,8.15e-07,3;CL:0002590,9.64e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006215;9.11e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000488!2.89e-33!4;UBERON:0002680!1.80e-32!9;UBERON:0001895!1.80e-32!9;UBERON:0010092!1.80e-32!9;UBERON:0002200!1.15e-26!11;UBERON:0006876!1.15e-26!11;UBERON:0003210!5.28e-26!3;UBERON:0001778!1.46e-25!3;UBERON:0001775!1.46e-25!3;UBERON:0004733!2.84e-24!12;UBERON:0002028!2.84e-24!12;UBERON:0007277!2.84e-24!12;UBERON:0002037!1.47e-22!6;UBERON:0006215!1.47e-22!6;UBERON:0004732!2.23e-22!13;UBERON:0002203!2.72e-22!6;UBERON:0001768!2.72e-22!6;UBERON:0003076!2.40e-19!15;UBERON:0003057!2.40e-19!15;UBERON:0007625!1.05e-18!11;UBERON:0003075!3.82e-16!86;UBERON:0007284!3.82e-16!86;UBERON:0002346!2.51e-15!90;UBERON:0001801!1.12e-14!14;UBERON:0000033!3.45e-12!123;UBERON:0002616!3.71e-12!59;UBERON:0000988!1.21e-11!3;UBERON:0000153!1.65e-11!129;UBERON:0007811!1.65e-11!129;UBERON:0004121!6.34e-11!169;UBERON:0000019!8.82e-11!19;UBERON:0000047!8.82e-11!19;UBERON:0004088!8.82e-11!19;UBERON:0003072!8.82e-11!19;UBERON:0003071!8.82e-11!19;UBERON:0004128!8.82e-11!19;UBERON:0000924!1.31e-10!173;UBERON:0006601!1.31e-10!173;UBERON:0000970!3.10e-10!20;UBERON:0000955!4.91e-10!69;UBERON:0006238!4.91e-10!69;UBERON:0005085!7.44e-10!29;UBERON:0002104!9.70e-10!21;UBERON:0001456!9.70e-10!21;UBERON:0002506!1.76e-09!1;UBERON:0001769!1.76e-09!1;UBERON:0000020!7.06e-09!23;UBERON:0001032!1.68e-08!24;UBERON:0004456!1.68e-08!24;UBERON:0000063!1.74e-08!97;UBERON:0001017!3.04e-08!82;UBERON:0001049!4.90e-08!57;UBERON:0005068!4.90e-08!57;UBERON:0006241!4.90e-08!57;UBERON:0007135!4.90e-08!57;UBERON:0005743!8.46e-08!86;UBERON:0005284!1.32e-07!5;UBERON:0000119!2.96e-07!312;UBERON:0000073!6.21e-07!94;UBERON:0001016!6.21e-07!94;UBERON:0000064!7.93e-07!219 | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.99e-25,6;UBERON:0006215,2.99e-25,6;UBERON:0003210,6.44e-23,3;UBERON:0002680,4.41e-17,9;UBERON:0001895,4.41e-17,9;UBERON:0010092,4.41e-17,9;UBERON:0004733,5.58e-13,12;UBERON:0002028,5.58e-13,12;UBERON:0007277,5.58e-13,12;UBERON:0004732,4.96e-12,13;UBERON:0003076,1.65e-10,15;UBERON:0003057,1.65e-10,15;UBERON:0006915,5.80e-07,3;UBERON:0007616,5.80e-07,3;UBERON:0002217,5.80e-07,3;UBERON:0002018,5.80e-07,3;UBERON:0002369,6.50e-07,3;UBERON:0001235,6.50e-07,3;UBERON:0006858,6.50e-07,3;UBERON:0006876,6.54e-07,11;UBERON:0001778,8.15e-07,3;UBERON:0001775,8.15e-07,3 | |||
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|short_description=p7@ZIC4 | |||
}} |
Revision as of 21:59, 12 September 2013
Short description: | p7@ZIC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_ZIC4_5end |
Coexpression cluster: | C4292_synovial_Pericytes_Astrocyte_Ciliary_Lens_Smooth_Fibroblast |
Association with transcript: | 71bp_to_ENST00000462748_5end |
EntrezGene: | ZIC4 |
HGNC: | 20393 |
UniProt: | C9JD04 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 1.84e-34 | 2 |
astrocyte of the cerebellum | 5.15e-23 | 3 |
leptomeningeal cell | 6.44e-23 | 3 |
pericyte cell | 8.74e-18 | 4 |
extracellular matrix secreting cell | 1.27e-10 | 15 |
oligodendrocyte | 1.94e-10 | 7 |
macroglial cell | 1.94e-10 | 7 |
astrocyte | 1.94e-10 | 7 |
oligodendrocyte precursor cell | 1.94e-10 | 7 |
synovial cell | 5.80e-07 | 3 |
ciliated cell | 8.15e-07 | 3 |
ciliated epithelial cell | 8.15e-07 | 3 |
multi-ciliated epithelial cell | 8.15e-07 | 3 |
non-pigmented ciliary epithelial cell | 8.15e-07 | 3 |
smooth muscle cell of the brain vasculature | 9.64e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 2.99e-25 | 6 |
rhombic lip | 2.99e-25 | 6 |
blood-cerebrospinal fluid barrier | 6.44e-23 | 3 |
regional part of metencephalon | 4.41e-17 | 9 |
metencephalon | 4.41e-17 | 9 |
future metencephalon | 4.41e-17 | 9 |
segmental subdivision of hindbrain | 5.58e-13 | 12 |
hindbrain | 5.58e-13 | 12 |
presumptive hindbrain | 5.58e-13 | 12 |
segmental subdivision of nervous system | 4.96e-12 | 13 |
posterior neural tube | 1.65e-10 | 15 |
chordal neural plate | 1.65e-10 | 15 |
stratified squamous epithelium | 5.80e-07 | 3 |
layer of synovial tissue | 5.80e-07 | 3 |
synovial joint | 5.80e-07 | 3 |
synovial membrane of synovial joint | 5.80e-07 | 3 |
adrenal gland | 6.50e-07 | 3 |
adrenal cortex | 6.50e-07 | 3 |
adrenal/interrenal gland | 6.50e-07 | 3 |
vasculature of organ | 6.54e-07 | 11 |
ciliary epithelium | 8.15e-07 | 3 |
ciliary body | 8.15e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.