FFCP PHASE1:Hg19::chr3:145789101..145789120,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5352|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9082|TSSclassifier=N|UniProt=|association_with_transcript=-144bp_to_ENST00000495700_5end|coexpression_cluster_id=C1512|description=CAGE_peak_5_at_PLOD2_5end|id=chr3:145789101..145789120,-|ontology_enrichment_celltype=CL:0000222!5.86e-09!119;CL:0000055!6.43e-09!180;CL:0000220!1.57e-08!246;CL:0000680!2.27e-08!57;CL:0000056!2.27e-08!57;CL:0000355!2.27e-08!57;CL:0002321!3.07e-08!248;CL:0000187!2.44e-07!54;CL:0000548!8.88e-07!679;CL:0000004!8.88e-07!679;CL:0000255!8.88e-07!679|ontology_enrichment_celltype_v019=CL:0002539;1.26e-15;10!CL:0000359;6.28e-15;32!CL:0002595;2.73e-11;5!CL:0000192;9.07e-09;43!CL:0000134;5.04e-08;55!CL:0002593;7.03e-08;2!CL:0002195;1.09e-07;2!CL:0002571;1.09e-07;2|ontology_enrichment_celltype_v019_2=CL:0002539,4.38e-16,10;CL:0000359,7.46e-15,32;CL:0002595,5.19e-11,5;CL:0000192,2.73e-10,43;CL:0000514,2.73e-10,43;CL:0000680,4.31e-08,58;CL:0000056,4.31e-08,58;CL:0000355,4.31e-08,58;CL:0000222,1.13e-07,121;CL:0002593,1.32e-07,2;CL:0002195,1.66e-07,2;CL:0002571,1.66e-07,2;CL:0000187,2.00e-07,55|ontology_enrichment_development_v019=CL:0000514;9.07e-09;43|ontology_enrichment_disease=DOID:2394!1.37e-11!14;DOID:120!2.29e-08!27;DOID:193!2.29e-08!29|ontology_enrichment_disease_v019=DOID:2394;2.11e-22;14!DOID:0060084;1.16e-10;3!DOID:127;1.16e-10;3!DOID:120;1.33e-10;27!DOID:193;9.90e-10;29!DOID:0060072;4.26e-08;4|ontology_enrichment_disease_v019_2=DOID:2394,1.34e-22,14;DOID:120,1.07e-10,27;DOID:0060084,1.21e-10,3;DOID:127,1.21e-10,3;DOID:193,8.09e-10,29;DOID:0060072,4.39e-08,4|ontology_enrichment_uberon=UBERON:0004573!2.96e-07!33;UBERON:0004571!2.96e-07!33;UBERON:0000914!3.05e-07!83;UBERON:0002329!3.05e-07!83;UBERON:0003077!3.05e-07!83;UBERON:0003059!3.05e-07!83;UBERON:0007282!3.05e-07!83;UBERON:0009618!3.05e-07!83;UBERON:0007285!3.05e-07!83;UBERON:0001134!4.22e-07!61;UBERON:0002036!4.22e-07!61;UBERON:0003082!4.22e-07!61;UBERON:0000490!4.39e-07!138;UBERON:0002385!4.74e-07!63;UBERON:0001015!4.74e-07!63;UBERON:0000383!4.74e-07!63;UBERON:0001637!5.48e-07!42;UBERON:0003509!5.48e-07!42;UBERON:0004572!5.48e-07!42|ontology_enrichment_uberon_v019=UBERON:0004237;1.26e-15;10!UBERON:0004695;1.26e-15;10!UBERON:0002111;1.26e-15;10!UBERON:0004178;1.26e-15;10!UBERON:0004573;1.93e-11;33!UBERON:0004571;1.93e-11;33!UBERON:0002118;2.24e-11;5!UBERON:0003834;2.73e-11;5!UBERON:0001533;2.73e-11;5!UBERON:0001135;4.58e-10;15!UBERON:0000992;9.03e-09;13!UBERON:0003513;4.62e-08;7!UBERON:0002456;7.03e-08;2!UBERON:0000947;6.80e-07;21!UBERON:0010191;6.80e-07;21!UBERON:0001637;7.92e-07;42!UBERON:0003509;7.92e-07;42!UBERON:0004572;7.92e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0004237,4.38e-16,10;UBERON:0004695,4.38e-16,10;UBERON:0002111,4.38e-16,10;UBERON:0004178,4.38e-16,10;UBERON:0004573,3.59e-12,33;UBERON:0004571,3.59e-12,33;UBERON:0002118,2.06e-11,5;UBERON:0003834,5.19e-11,5;UBERON:0001533,5.19e-11,5;UBERON:0001637,1.31e-10,42;UBERON:0003509,1.31e-10,42;UBERON:0004572,1.31e-10,42;UBERON:0001135,2.33e-10,15;UBERON:0000992,8.53e-09,13;UBERON:0003513,7.22e-08,7;UBERON:0005256,1.19e-07,122;UBERON:0002456,1.32e-07,2;UBERON:0001134,2.25e-07,62;UBERON:0002036,2.25e-07,62;UBERON:0003082,2.25e-07,62;UBERON:0007503,3.87e-07,78;UBERON:0002329,4.10e-07,71;UBERON:0003059,4.10e-07,71;UBERON:0007282,4.10e-07,71;UBERON:0004290,4.10e-07,71;UBERON:0009618,4.10e-07,71;UBERON:0000947,4.30e-07,21;UBERON:0010191,4.30e-07,21;UBERON:0002385,4.74e-07,64;UBERON:0001015,4.74e-07,64;UBERON:0000383,4.74e-07,64;UBERON:0003077,5.71e-07,72;UBERON:0007285,5.71e-07,72;UBERON:0007524,7.87e-07,73;UBERON:0007500,9.68e-07,59;UBERON:0001981,9.68e-07,59;UBERON:0004537,9.68e-07,59;UBERON:0006965,9.68e-07,59|phase1_expression=0,0.856402095563933,0.140954404095971,3.00219895059391,0,1.74467704820074,2.53299878168311,0,0.261185628199839,0.491467873003018,0,0,0,0,0.662794751455832,2.01697543935533,1.80808358407193,3.65155045193687,1.95173119516203,0,0.204000691244253,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0.361439152384566,0,1.30361867064741,0,2.91980922181582,0,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0,0,1.37559020970034,0.208994966536811,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0.22452937262617,0.337834441449967,0,0,0,0,0,0,3.97577561356255,0.12663051166458,0.529636723252875,0.286836620748814,0.709336764396714,0,0,0,0,0.269421344139376,0.326923806226917,0,0.576175924479999,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0.494533858557114,0,0,0,0.125118519871964,0,0,0.612975591598039,0.600952235626387,0.794025282120147,0.179389635688862,0.85422955527427,0.423863802319124,0.600182192168805,0.103052529238439,0,0,0,0.0974370051611986,0.504867548488229,0,0.161646056818812,0,0.403008392910561,0,0.193260853163297,0.818238361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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5352 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9082 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-144bp_to_ENST00000495700_5end | |||
|coexpression_cluster_id=C1512 | |||
|description=CAGE_peak_5_at_PLOD2_5end | |||
|id=chr3:145789101..145789120,- | |||
|ontology_enrichment_celltype=CL:0000222!5.86e-09!119;CL:0000055!6.43e-09!180;CL:0000220!1.57e-08!246;CL:0000680!2.27e-08!57;CL:0000056!2.27e-08!57;CL:0000355!2.27e-08!57;CL:0002321!3.07e-08!248;CL:0000187!2.44e-07!54;CL:0000548!8.88e-07!679;CL:0000004!8.88e-07!679;CL:0000255!8.88e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0002539;1.26e-15;10!CL:0000359;6.28e-15;32!CL:0002595;2.73e-11;5!CL:0000192;9.07e-09;43!CL:0000134;5.04e-08;55!CL:0002593;7.03e-08;2!CL:0002195;1.09e-07;2!CL:0002571;1.09e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002539,4.38e-16,10;CL:0000359,7.46e-15,32;CL:0002595,5.19e-11,5;CL:0000192,2.73e-10,43;CL:0000514,2.73e-10,43;CL:0000680,4.31e-08,58;CL:0000056,4.31e-08,58;CL:0000355,4.31e-08,58;CL:0000222,1.13e-07,121;CL:0002593,1.32e-07,2;CL:0002195,1.66e-07,2;CL:0002571,1.66e-07,2;CL:0000187,2.00e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000514;9.07e-09;43 | |||
|ontology_enrichment_disease=DOID:2394!1.37e-11!14;DOID:120!2.29e-08!27;DOID:193!2.29e-08!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.11e-22;14!DOID:0060084;1.16e-10;3!DOID:127;1.16e-10;3!DOID:120;1.33e-10;27!DOID:193;9.90e-10;29!DOID:0060072;4.26e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.34e-22,14;DOID:120,1.07e-10,27;DOID:0060084,1.21e-10,3;DOID:127,1.21e-10,3;DOID:193,8.09e-10,29;DOID:0060072,4.39e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0004573!2.96e-07!33;UBERON:0004571!2.96e-07!33;UBERON:0000914!3.05e-07!83;UBERON:0002329!3.05e-07!83;UBERON:0003077!3.05e-07!83;UBERON:0003059!3.05e-07!83;UBERON:0007282!3.05e-07!83;UBERON:0009618!3.05e-07!83;UBERON:0007285!3.05e-07!83;UBERON:0001134!4.22e-07!61;UBERON:0002036!4.22e-07!61;UBERON:0003082!4.22e-07!61;UBERON:0000490!4.39e-07!138;UBERON:0002385!4.74e-07!63;UBERON:0001015!4.74e-07!63;UBERON:0000383!4.74e-07!63;UBERON:0001637!5.48e-07!42;UBERON:0003509!5.48e-07!42;UBERON:0004572!5.48e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;1.26e-15;10!UBERON:0004695;1.26e-15;10!UBERON:0002111;1.26e-15;10!UBERON:0004178;1.26e-15;10!UBERON:0004573;1.93e-11;33!UBERON:0004571;1.93e-11;33!UBERON:0002118;2.24e-11;5!UBERON:0003834;2.73e-11;5!UBERON:0001533;2.73e-11;5!UBERON:0001135;4.58e-10;15!UBERON:0000992;9.03e-09;13!UBERON:0003513;4.62e-08;7!UBERON:0002456;7.03e-08;2!UBERON:0000947;6.80e-07;21!UBERON:0010191;6.80e-07;21!UBERON:0001637;7.92e-07;42!UBERON:0003509;7.92e-07;42!UBERON:0004572;7.92e-07;42 | |||
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| |||
|short_description=p5@PLOD2 | |||
}} |
Revision as of 21:55, 12 September 2013
Short description: | p5@PLOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_PLOD2_5end |
Coexpression cluster: | C1512_Smooth_hepatic_mesenchymal_Mallassezderived_Small_Gingival_Ewing |
Association with transcript: | -144bp_to_ENST00000495700_5end |
EntrezGene: | PLOD2 |
HGNC: | 9082 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 4.38e-16 | 10 |
vascular associated smooth muscle cell | 7.46e-15 | 32 |
smooth muscle cell of the subclavian artery | 5.19e-11 | 5 |
smooth muscle cell | 2.73e-10 | 43 |
smooth muscle myoblast | 2.73e-10 | 43 |
muscle precursor cell | 4.31e-08 | 58 |
myoblast | 4.31e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.31e-08 | 58 |
mesodermal cell | 1.13e-07 | 121 |
smooth muscle cell of the internal thoracic artery | 1.32e-07 | 2 |
hepatic stem cell | 1.66e-07 | 2 |
hepatic mesenchymal stem cell | 1.66e-07 | 2 |
muscle cell | 2.00e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.34e-22 | 14 |
female reproductive organ cancer | 1.07e-10 | 27 |
cell type benign neoplasm | 1.21e-10 | 3 |
leiomyoma | 1.21e-10 | 3 |
reproductive organ cancer | 8.09e-10 | 29 |
benign neoplasm | 4.39e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.