FFCP PHASE1:Mm9::chr11:97401671..97401696,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:97401671..97401696,-|id=chr11:97401671..97401696,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!8.68e-20!50;UBERON:0006238!8.68e-20!50;UBERON:0000033!5.00e-19!63;UBERON:0002616!5.37e-19!49;UBERON:0004121!1.70e-18!102;UBERON:0000924!1.70e-18!102;UBERON:0006601!1.70e-18!102;UBERON:0001017!2.53e-18!73;UBERON:0005743!2.53e-18!73;UBERON:0001049!2.30e-17!52;UBERON:0005068!2.30e-17!52;UBERON:0006241!2.30e-17!52;UBERON:0007135!2.30e-17!52;UBERON:0003056!3.37e-17!49;UBERON:0000073!3.59e-17!75;UBERON:0001016!3.59e-17!75;UBERON:0002346!3.63e-17!71;UBERON:0003075!3.63e-17!71;UBERON:0007284!3.63e-17!71;UBERON:0003080!7.64e-16!40;UBERON:0002780!4.12e-15!39;UBERON:0001890!4.12e-15!39;UBERON:0006240!4.12e-15!39;UBERON:0002791!1.02e-12!29;UBERON:0003528!1.02e-12!29;UBERON:0001893!1.02e-12!29;UBERON:0002020!5.35e-12!34;UBERON:0000153!9.37e-10!94;UBERON:0007811!2.37e-09!86;UBERON:0000956!2.56e-09!21;UBERON:0001869!2.56e-09!21;UBERON:0000203!2.56e-09!21;UBERON:0002021!8.76e-09!10;UBERON:0000411!8.76e-09!10;UBERON:0001950!8.76e-09!10;UBERON:0002619!4.33e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0000955,1.71e-23,47;UBERON:0006238,1.71e-23,47;UBERON:0002616,6.06e-22,46;UBERON:0000073,3.09e-21,54;UBERON:0001049,1.44e-20,52;UBERON:0005068,1.44e-20,52;UBERON:0006241,1.44e-20,52;UBERON:0007135,1.44e-20,52;UBERON:0002346,3.80e-18,64;UBERON:0003075,3.80e-18,64;UBERON:0007284,3.80e-18,64;UBERON:0001017,3.95e-18,73;UBERON:0003080,1.66e-17,40;UBERON:0001016,1.96e-17,75;UBERON:0002021,1.20e-16,10;UBERON:0000411,1.20e-16,10;UBERON:0001950,1.20e-16,10;UBERON:0010371,3.15e-16,73;UBERON:0002780,4.03e-16,39;UBERON:0001890,4.03e-16,39;UBERON:0006240,4.03e-16,39;UBERON:0003056,4.14e-16,49;UBERON:0004121,2.81e-15,95;UBERON:0000924,2.81e-15,95;UBERON:0006601,2.81e-15,95;UBERON:0003528,1.38e-14,29;UBERON:0002791,1.38e-14,29;UBERON:0001893,1.38e-14,29;UBERON:0002619,4.47e-13,17;UBERON:0000956,5.04e-12,21;UBERON:0001869,5.04e-12,21;UBERON:0000203,5.04e-12,21;UBERON:0002020,8.06e-12,34;UBERON:0010314,2.12e-10,92|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,1.26766280701236,0,0,0,0,0,0,0,0.933206510776299,0.540023753326763,0.210324961351382,0,0,0.122490799214954,0.479227355091182,0.919218786610021,5.50579404996943,0.766124028511126,1.84327839907492,0.131886287730194,0.640413505216868,0.52091337055676,0.837548997004143,2.25105044012672,2.59757021220577,0.883885756421003,0.427115042397309,0.559198337475902,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.608930956624282,0,0.301445281105245,0.23517741427141,0,0.247194967734374,0,0,0,0.662524555381181,0,0,7.31951992528868,3.35114730901528,0,0,0,0,4.94309110035915,4.11750542536764,2.01046963380583,2.78118912307642,3.06858548796397,4.77912502486988,4.05603157669394,0.305518091550949,0.124406970610093,0.505445516867349,0.420883711772948,0.650602214813519,0,0.180062129805349,0.452114453507145,0.476255494059295,1.0249097622788,0.468508622798644,1.55222022443409,0.215567992932842,0.756424320671277,0,0,0.278047249225598,1.74126083261083,1.02891068203972,0,0,0,0,0.207125772535502,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0,2.3131894342054,1.44066457330998,0,0,0,0.696710015581316,0.128867461322093,0.403367049246685,0.22237804384487,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0,0.228497025219458,1.1270773567308,0.814605311381257,0.581857461502877,0.561086559122548,0.758838445491087,1.18088118383682,2.82597710114475,0.987177311374404,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0.554259570499814,0,0.488894929326078,0.339490171550376,0,0.167506257441816,0.714130922658041,0.975668239288994,0.472905432318573,0.44292937929755,0,0.983179888294428,0.345369963731791,0.144649058581512,0,0,0.491764273019036,0,3.69266356971921,3.8679856575427,0,0.252470927204373,0,0.390438744296638,0.215423397732799,0.477937595905104,0.891194696329576,0.566153061577665,0,0.584511715822624,0.790575555893047,6.74774764485795,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,1.70219802876894,0.18006109403131,0.258717367565509,0.428674070063185,0.354680467284547,0.891844088010353,1.31639216481697,0,0,0.21183207086382,0.220528398054962,1.15420377059036,0.484393280087717,0.482503399425247,0.477489376012546,0.164140899745061,0,7.41701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0.218362563746178,0.539457385539283,0.247960367176008,0,0,0,0,0,0,0,0.258319646955462,0,0.352071715937262,0.39061315453185,0.104859344425711,0.241584120826006,0.288030006257865,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0.665957860122194,0.179427713218951,0,0,0,0,0,1.00314420807073,12.4245405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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:97401671..97401696,- | |||
|id=chr11:97401671..97401696,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!8.68e-20!50;UBERON:0006238!8.68e-20!50;UBERON:0000033!5.00e-19!63;UBERON:0002616!5.37e-19!49;UBERON:0004121!1.70e-18!102;UBERON:0000924!1.70e-18!102;UBERON:0006601!1.70e-18!102;UBERON:0001017!2.53e-18!73;UBERON:0005743!2.53e-18!73;UBERON:0001049!2.30e-17!52;UBERON:0005068!2.30e-17!52;UBERON:0006241!2.30e-17!52;UBERON:0007135!2.30e-17!52;UBERON:0003056!3.37e-17!49;UBERON:0000073!3.59e-17!75;UBERON:0001016!3.59e-17!75;UBERON:0002346!3.63e-17!71;UBERON:0003075!3.63e-17!71;UBERON:0007284!3.63e-17!71;UBERON:0003080!7.64e-16!40;UBERON:0002780!4.12e-15!39;UBERON:0001890!4.12e-15!39;UBERON:0006240!4.12e-15!39;UBERON:0002791!1.02e-12!29;UBERON:0003528!1.02e-12!29;UBERON:0001893!1.02e-12!29;UBERON:0002020!5.35e-12!34;UBERON:0000153!9.37e-10!94;UBERON:0007811!2.37e-09!86;UBERON:0000956!2.56e-09!21;UBERON:0001869!2.56e-09!21;UBERON:0000203!2.56e-09!21;UBERON:0002021!8.76e-09!10;UBERON:0000411!8.76e-09!10;UBERON:0001950!8.76e-09!10;UBERON:0002619!4.33e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000955,1.71e-23,47;UBERON:0006238,1.71e-23,47;UBERON:0002616,6.06e-22,46;UBERON:0000073,3.09e-21,54;UBERON:0001049,1.44e-20,52;UBERON:0005068,1.44e-20,52;UBERON:0006241,1.44e-20,52;UBERON:0007135,1.44e-20,52;UBERON:0002346,3.80e-18,64;UBERON:0003075,3.80e-18,64;UBERON:0007284,3.80e-18,64;UBERON:0001017,3.95e-18,73;UBERON:0003080,1.66e-17,40;UBERON:0001016,1.96e-17,75;UBERON:0002021,1.20e-16,10;UBERON:0000411,1.20e-16,10;UBERON:0001950,1.20e-16,10;UBERON:0010371,3.15e-16,73;UBERON:0002780,4.03e-16,39;UBERON:0001890,4.03e-16,39;UBERON:0006240,4.03e-16,39;UBERON:0003056,4.14e-16,49;UBERON:0004121,2.81e-15,95;UBERON:0000924,2.81e-15,95;UBERON:0006601,2.81e-15,95;UBERON:0003528,1.38e-14,29;UBERON:0002791,1.38e-14,29;UBERON:0001893,1.38e-14,29;UBERON:0002619,4.47e-13,17;UBERON:0000956,5.04e-12,21;UBERON:0001869,5.04e-12,21;UBERON:0000203,5.04e-12,21;UBERON:0002020,8.06e-12,34;UBERON:0010314,2.12e-10,92 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,1.26766280701236,0,0,0,0,0,0,0,0.933206510776299,0.540023753326763,0.210324961351382,0,0,0.122490799214954,0.479227355091182,0.919218786610021,5.50579404996943,0.766124028511126,1.84327839907492,0.131886287730194,0.640413505216868,0.52091337055676,0.837548997004143,2.25105044012672,2.59757021220577,0.883885756421003,0.427115042397309,0.559198337475902,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.608930956624282,0,0.301445281105245,0.23517741427141,0,0.247194967734374,0,0,0,0.662524555381181,0,0,7.31951992528868,3.35114730901528,0,0,0,0,4.94309110035915,4.11750542536764,2.01046963380583,2.78118912307642,3.06858548796397,4.77912502486988,4.05603157669394,0.305518091550949,0.124406970610093,0.505445516867349,0.420883711772948,0.650602214813519,0,0.180062129805349,0.452114453507145,0.476255494059295,1.0249097622788,0.468508622798644,1.55222022443409,0.215567992932842,0.756424320671277,0,0,0.278047249225598,1.74126083261083,1.02891068203972,0,0,0,0,0.207125772535502,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0,2.3131894342054,1.44066457330998,0,0,0,0.696710015581316,0.128867461322093,0.403367049246685,0.22237804384487,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0,0.228497025219458,1.1270773567308,0.814605311381257,0.581857461502877,0.561086559122548,0.758838445491087,1.18088118383682,2.82597710114475,0.987177311374404,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0.554259570499814,0,0.488894929326078,0.339490171550376,0,0.167506257441816,0.714130922658041,0.975668239288994,0.472905432318573,0.44292937929755,0,0.983179888294428,0.345369963731791,0.144649058581512,0,0,0.491764273019036,0,3.69266356971921,3.8679856575427,0,0.252470927204373,0,0.390438744296638,0.215423397732799,0.477937595905104,0.891194696329576,0.566153061577665,0,0.584511715822624,0.790575555893047,6.74774764485795,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,1.70219802876894,0.18006109403131,0.258717367565509,0.428674070063185,0.354680467284547,0.891844088010353,1.31639216481697,0,0,0.21183207086382,0.220528398054962,1.15420377059036,0.484393280087717,0.482503399425247,0.477489376012546,0.164140899745061,0,7.41701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0.218362563746178,0.539457385539283,0.247960367176008,0,0,0,0,0,0,0,0.258319646955462,0,0.352071715937262,0.39061315453185,0.104859344425711,0.241584120826006,0.288030006257865,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0.665957860122194,0.179427713218951,0,0,0,0,0,1.00314420807073,12.4245405375755,10.5874804396651,9.16632821503035,9.28007184655913,3.42541259885321,6.0431511791176,0.675022500231806,4.95353323546643,5.89085131679466,4.65984280576638,0.207574695168353,0,0.512200817262403,0.486213434136588,0,0,0.44449345560323,0.618105171716683,0.962757628775446,0.505394423527595,1.01391719956096,0.377252682772152,0.749132059759059,0.512201219238954,0.746661096422973,0,0.811190281613988,0.578727661391115,0.412085900803307,0.883193520806384,0.685738504770831,1.77475806159337,0.476872379894642,1.16277133305863,0.470546902076653,1.18460451048347,0.548783918618318,1.31534855718921,0.543216455383447,0.561142271657738,1.18635018124174,0.29551344712669,2.04615521584845,0.154936841185966,0.578719832943424,0.749431733813838,1.16965804222704,0.644613162144895,0,0.220591419119515,0 | |||
|short_description=p@chr11:97401671..97401696,- | |||
}} |
Revision as of 21:44, 12 September 2013
Short description: | p@chr11:97401671..97401696, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:97401671..97401696, - |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brain | 1.71e-23 | 47 |
future brain | 1.71e-23 | 47 |
regional part of brain | 6.06e-22 | 46 |
regional part of nervous system | 3.09e-21 | 54 |
neural tube | 1.44e-20 | 52 |
neural rod | 1.44e-20 | 52 |
future spinal cord | 1.44e-20 | 52 |
neural keel | 1.44e-20 | 52 |
neurectoderm | 3.80e-18 | 64 |
neural plate | 3.80e-18 | 64 |
presumptive neural plate | 3.80e-18 | 64 |
central nervous system | 3.95e-18 | 73 |
anterior neural tube | 1.66e-17 | 40 |
nervous system | 1.96e-17 | 75 |
occipital lobe | 1.20e-16 | 10 |
visual cortex | 1.20e-16 | 10 |
neocortex | 1.20e-16 | 10 |
ecto-epithelium | 3.15e-16 | 73 |
regional part of forebrain | 4.03e-16 | 39 |
forebrain | 4.03e-16 | 39 |
future forebrain | 4.03e-16 | 39 |
pre-chordal neural plate | 4.14e-16 | 49 |
ectoderm-derived structure | 2.81e-15 | 95 |
ectoderm | 2.81e-15 | 95 |
presumptive ectoderm | 2.81e-15 | 95 |
brain grey matter | 1.38e-14 | 29 |
regional part of telencephalon | 1.38e-14 | 29 |
telencephalon | 1.38e-14 | 29 |
regional part of cerebral cortex | 4.47e-13 | 17 |
cerebral cortex | 5.04e-12 | 21 |
cerebral hemisphere | 5.04e-12 | 21 |
pallium | 5.04e-12 | 21 |
gray matter | 8.06e-12 | 34 |
structure with developmental contribution from neural crest | 2.12e-10 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.