FFCP PHASE1:Hg19::chr3:122513700..122513738,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84925|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16628|TSSclassifier=S|UniProt=Q96SL1|association_with_transcript=58bp_to_ENST00000261038_5end|coexpression_cluster_id=C2|description=CAGE_peak_2_at_DIRC2_5end|id=chr3:122513700..122513738,+|ontology_enrichment_celltype=CL:0000766!1.50e-32!76;CL:0000860!4.96e-32!45;CL:0002057!7.92e-31!42;CL:0002009!1.47e-28!65;CL:0002194!1.90e-27!63;CL:0000576!1.90e-27!63;CL:0000040!1.90e-27!63;CL:0000559!1.90e-27!63;CL:0000557!5.52e-27!71;CL:0000839!4.56e-25!70;CL:0000738!1.65e-24!140;CL:0002087!1.17e-19!119;CL:0002031!1.17e-18!124;CL:0000763!1.58e-15!112;CL:0000049!1.58e-15!112;CL:0000037!1.37e-13!172;CL:0000566!1.37e-13!172;CL:0002032!8.98e-13!165;CL:0000837!8.98e-13!165;CL:0000988!1.27e-12!182;CL:0002393!5.91e-08!9;CL:0002397!5.91e-08!9;CL:0000094!2.08e-07!8|ontology_enrichment_celltype_v019=CL:0000860;8.68e-47;33!CL:0002057;8.68e-47;33!CL:0000576;1.55e-40;48!CL:0000473;1.16e-33;39!CL:0000234;1.16e-33;39!CL:0000766;8.49e-29;69!CL:0002087;7.30e-15;104!CL:0000094;2.09e-14;8!CL:0000763;2.92e-12;100!CL:0000081;4.07e-12;11!CL:0000738;1.77e-11;136!CL:0002393;7.87e-11;6!CL:0002397;7.87e-11;6!CL:0000775;9.63e-07;3|ontology_enrichment_celltype_v019_2=CL:0000860,5.11e-66,42;CL:0002057,5.11e-66,42;CL:0000766,2.65e-59,72;CL:0000473,3.08e-58,48;CL:0000234,3.08e-58,48;CL:0002009,2.14e-52,61;CL:0002194,5.39e-50,59;CL:0000576,5.39e-50,59;CL:0000040,5.39e-50,59;CL:0000559,5.39e-50,59;CL:0000557,2.48e-48,67;CL:0000738,8.85e-46,136;CL:0000839,4.61e-45,66;CL:0002087,6.81e-38,115;CL:0000763,2.09e-36,108;CL:0000049,2.09e-36,108;CL:0002031,3.59e-35,120;CL:0000037,8.76e-33,168;CL:0002032,2.70e-31,161;CL:0000837,2.70e-31,161;CL:0000988,5.04e-31,177;CL:0002393,1.44e-15,9;CL:0002397,1.44e-15,9;CL:0000094,2.23e-14,8;CL:0000081,4.98e-12,11;CL:0002320,1.13e-09,361;CL:0000134,2.78e-09,354;CL:0000219,8.62e-07,386;CL:0000775,9.72e-07,3|ontology_enrichment_development_v019=CL:0002057;3.83e-47;42!CL:0000049;3.52e-11;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!3.17e-27!102;UBERON:0003061!3.17e-27!102;UBERON:0002193!3.56e-25!112;UBERON:0002371!1.96e-22!80;UBERON:0001474!3.34e-19!86;UBERON:0002405!1.14e-16!115;UBERON:0004765!2.91e-15!101;UBERON:0001434!2.91e-15!101;UBERON:0002204!9.60e-07!167|ontology_enrichment_uberon_v019=UBERON:0001737;3.72e-11;9!UBERON:0001557;3.72e-11;9!UBERON:0000178;8.39e-11;15!UBERON:0000179;8.39e-11;15!UBERON:0000463;8.39e-11;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.78e-46,98;UBERON:0003061,4.78e-46,98;UBERON:0002371,1.07e-40,76;UBERON:0002193,5.41e-40,108;UBERON:0001474,1.53e-36,82;UBERON:0004765,5.13e-35,90;UBERON:0002405,2.44e-30,93;UBERON:0001434,7.14e-30,100;UBERON:0003081,4.45e-20,203;UBERON:0002204,1.13e-14,167;UBERON:0000926,1.16e-12,315;UBERON:0004120,1.16e-12,315;UBERON:0006603,1.16e-12,315;UBERON:0001737,8.15e-12,9;UBERON:0000178,8.39e-11,15;UBERON:0000179,8.39e-11,15;UBERON:0000463,8.39e-11,15;UBERON:0002384,2.70e-09,371|phase1_expression=0,0.428201047781966,0,1.0007329835313,0,0.872338524100369,0,0,0,0,0,0,0,1.8564952944007,2.31978163009541,0,0,0,0.487932798790507,0,0.204000691244253,0,0,0,0,0,0,0,12.194292582316,8.06041736004147,12.6949221119182,0,0,0,0,0,0.293600439334847,17.7278530730201,22.8620670115962,16.4928261744047,1.11957737119962,2.26725566213286,1.80302897343931,12.6496467738221,11.3362783106643,7.76268995801012,14.4106002881524,10.6903650885675,10.8397229813286,9.49384894663097,11.7833925003386,8.98632473576624,19.9952494827239,15.4916324060118,23.0225027210381,15.0593871634084,14.191119803008,6.06753408001728,15.9163624032869,19.5766706516417,13.4260796417799,14.1836059080288,18.1511928435685,11.08184351385,19.4440189881151,17.0215567407342,15.5705562248894,12.5624332628372,10.429658368404,10.2078757011405,20.5835830895345,15.0993830754902,9.49387162322653,12.8865724650284,12.5436536979376,12.9988360215193,20.8931253932481,17.2703426767732,11.7329678288868,21.6609685243349,17.3057509163208,13.6998115323475,1.75996244461323,0,1.77901850772711,2.13365111283254,0.800791974072025,0,0,0,25.6145836099252,19.9660644386119,29.0527653375174,1.32171328579026,3.92355994087075,0,1.180258620683,1.96505381374582,0.616804496998528,0,1.30368906653436,1.4203434172042,0,0.111410456885174,0.883817722424512,1.10766947291811,0.270803863765016,0.25618263945135,0.260118695119756,0,0,0,0.14828656316206,0,1.04535523804977,0,0.766440987203842,0.68725489096526,0.253019692019503,0.318565414324097,0,0,0.150575119077773,0.383959833463255,0,0.473554504088034,0.821127996921047,0.604820229674197,1.06976078313403,0.579297615531196,0,0,0,0,0,0.869079113764942,0,0,0.756278537312543,0,0.351339142772504,0.327447688744282,0.364295288292542,0,0.324547393654683,0.174129737299267,0.797747763113191,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0.550236083880135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,54.0299711487859,42.65582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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84925 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16628 | |||
|TSSclassifier=S | |||
|UniProt=Q96SL1 | |||
|association_with_transcript=58bp_to_ENST00000261038_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_2_at_DIRC2_5end | |||
|id=chr3:122513700..122513738,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.50e-32!76;CL:0000860!4.96e-32!45;CL:0002057!7.92e-31!42;CL:0002009!1.47e-28!65;CL:0002194!1.90e-27!63;CL:0000576!1.90e-27!63;CL:0000040!1.90e-27!63;CL:0000559!1.90e-27!63;CL:0000557!5.52e-27!71;CL:0000839!4.56e-25!70;CL:0000738!1.65e-24!140;CL:0002087!1.17e-19!119;CL:0002031!1.17e-18!124;CL:0000763!1.58e-15!112;CL:0000049!1.58e-15!112;CL:0000037!1.37e-13!172;CL:0000566!1.37e-13!172;CL:0002032!8.98e-13!165;CL:0000837!8.98e-13!165;CL:0000988!1.27e-12!182;CL:0002393!5.91e-08!9;CL:0002397!5.91e-08!9;CL:0000094!2.08e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.68e-47;33!CL:0002057;8.68e-47;33!CL:0000576;1.55e-40;48!CL:0000473;1.16e-33;39!CL:0000234;1.16e-33;39!CL:0000766;8.49e-29;69!CL:0002087;7.30e-15;104!CL:0000094;2.09e-14;8!CL:0000763;2.92e-12;100!CL:0000081;4.07e-12;11!CL:0000738;1.77e-11;136!CL:0002393;7.87e-11;6!CL:0002397;7.87e-11;6!CL:0000775;9.63e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.11e-66,42;CL:0002057,5.11e-66,42;CL:0000766,2.65e-59,72;CL:0000473,3.08e-58,48;CL:0000234,3.08e-58,48;CL:0002009,2.14e-52,61;CL:0002194,5.39e-50,59;CL:0000576,5.39e-50,59;CL:0000040,5.39e-50,59;CL:0000559,5.39e-50,59;CL:0000557,2.48e-48,67;CL:0000738,8.85e-46,136;CL:0000839,4.61e-45,66;CL:0002087,6.81e-38,115;CL:0000763,2.09e-36,108;CL:0000049,2.09e-36,108;CL:0002031,3.59e-35,120;CL:0000037,8.76e-33,168;CL:0002032,2.70e-31,161;CL:0000837,2.70e-31,161;CL:0000988,5.04e-31,177;CL:0002393,1.44e-15,9;CL:0002397,1.44e-15,9;CL:0000094,2.23e-14,8;CL:0000081,4.98e-12,11;CL:0002320,1.13e-09,361;CL:0000134,2.78e-09,354;CL:0000219,8.62e-07,386;CL:0000775,9.72e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;3.83e-47;42!CL:0000049;3.52e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.17e-27!102;UBERON:0003061!3.17e-27!102;UBERON:0002193!3.56e-25!112;UBERON:0002371!1.96e-22!80;UBERON:0001474!3.34e-19!86;UBERON:0002405!1.14e-16!115;UBERON:0004765!2.91e-15!101;UBERON:0001434!2.91e-15!101;UBERON:0002204!9.60e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.72e-11;9!UBERON:0001557;3.72e-11;9!UBERON:0000178;8.39e-11;15!UBERON:0000179;8.39e-11;15!UBERON:0000463;8.39e-11;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.78e-46,98;UBERON:0003061,4.78e-46,98;UBERON:0002371,1.07e-40,76;UBERON:0002193,5.41e-40,108;UBERON:0001474,1.53e-36,82;UBERON:0004765,5.13e-35,90;UBERON:0002405,2.44e-30,93;UBERON:0001434,7.14e-30,100;UBERON:0003081,4.45e-20,203;UBERON:0002204,1.13e-14,167;UBERON:0000926,1.16e-12,315;UBERON:0004120,1.16e-12,315;UBERON:0006603,1.16e-12,315;UBERON:0001737,8.15e-12,9;UBERON:0000178,8.39e-11,15;UBERON:0000179,8.39e-11,15;UBERON:0000463,8.39e-11,15;UBERON:0002384,2.70e-09,371 | |||
|phase1_expression=0,0.428201047781966,0,1.0007329835313,0,0.872338524100369,0,0,0,0,0,0,0,1.8564952944007,2.31978163009541,0,0,0,0.487932798790507,0,0.204000691244253,0,0,0,0,0,0,0,12.194292582316,8.06041736004147,12.6949221119182,0,0,0,0,0,0.293600439334847,17.7278530730201,22.8620670115962,16.4928261744047,1.11957737119962,2.26725566213286,1.80302897343931,12.6496467738221,11.3362783106643,7.76268995801012,14.4106002881524,10.6903650885675,10.8397229813286,9.49384894663097,11.7833925003386,8.98632473576624,19.9952494827239,15.4916324060118,23.0225027210381,15.0593871634084,14.191119803008,6.06753408001728,15.9163624032869,19.5766706516417,13.4260796417799,14.1836059080288,18.1511928435685,11.08184351385,19.4440189881151,17.0215567407342,15.5705562248894,12.5624332628372,10.429658368404,10.2078757011405,20.5835830895345,15.0993830754902,9.49387162322653,12.8865724650284,12.5436536979376,12.9988360215193,20.8931253932481,17.2703426767732,11.7329678288868,21.6609685243349,17.3057509163208,13.6998115323475,1.75996244461323,0,1.77901850772711,2.13365111283254,0.800791974072025,0,0,0,25.6145836099252,19.9660644386119,29.0527653375174,1.32171328579026,3.92355994087075,0,1.180258620683,1.96505381374582,0.616804496998528,0,1.30368906653436,1.4203434172042,0,0.111410456885174,0.883817722424512,1.10766947291811,0.270803863765016,0.25618263945135,0.260118695119756,0,0,0,0.14828656316206,0,1.04535523804977,0,0.766440987203842,0.68725489096526,0.253019692019503,0.318565414324097,0,0,0.150575119077773,0.383959833463255,0,0.473554504088034,0.821127996921047,0.604820229674197,1.06976078313403,0.579297615531196,0,0,0,0,0,0.869079113764942,0,0,0.756278537312543,0,0.351339142772504,0.327447688744282,0.364295288292542,0,0.324547393654683,0.174129737299267,0.797747763113191,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0.550236083880135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,54.0299711487859,42.6558290563158,0,0,0.12663051166458,0,1.72101972449288,0,0,0,0.24666754841716,0,0,0,0.302714855289863,0,0.234321431833797,0,0.570471821544449,0,0.469737994575059,0.161872944368132,0,0.204154171254893,0,0.206651562351531,0,0.247266929278557,0,0.718618141816238,0,0,0,0,0,0,0,0.358779271377724,0,0.211931901159562,0.300091096084402,0,0.515281080091258,0,0,0,0,0,0,0,0.10075209822764,0,0.193260853163297,0.272746120590835,0.286804595389004,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0,0,0.643240938192885,1.38134921352481,0.928735856063958,0.721879481669586,1.77460200059766,1.85443159085912,1.68707720918437,1.54411561825352,1.74303555273925,2.37270619111097,1.8876383142423,4.31687223275761,1.53898862778556,0,0,0,0,1.26755034821831,0,0.590789906681404,0,0.122988438543114,0.171567810298526,0.658501712451753,0,0.100528972411631,0.185176890317059,0,0,1.44331342025273,0,0,0.288732895522148,0.462985512576611,0,0,0,0.738651018262192,0.468008530278475,0.743155811443641,0,0,0,0.358234090811393,0,0,0,0,0.621984346622316,1.58531948758658,0.6312121671319,0.253991577168676,0.381988425558278,0,0,0,0,0.571652865261156,1.12131084345361,0.87192013766656,0.66004457238855,0.258543431515556,0,0.845302752556,0,0,0.257207374262142,0,0.266422179016099,0.142977993658148,0,0,0,0.355391948742546,0,0,0.871533458600294,0,0,1.00451418286425,0,0.239624855491583,1.14861935834114,0,0.289562613335158,0.410952645100767,0.358121926479791,0,0.788123040807709,1.94064817373566,2.56686072559497,0,0,0,0,0,38.9483652452535,26.9245313283622,86.1984267946954,0.49076596687656,0,0,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0.260650843404249,0.391602314925481,0,5.16920065307218,9.70713903683776,5.87001567918944,0.303127571446259,0,0,0.248107807818777,0,0.280660094433074,0.256278298511402,0,0.160853921143607,0,0.154209693802656,0,0,0,0.232420756919918,0.120859449591622,0.200506470303285,0.368323955743585,0,0.364182336013434,1.04899531967539,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.618246069886334,0,0,0.574265537996172,0,0,0,0.154048617114644,0,0,0.107420244868274,0.145016693914229,0,0,0.330569830721956,0.192190067365106,0,0.4046311234222,0,1.25924938732256,0.6970372701606,0,0,0,0.18532421910392,0,0.372158369359667,0.316379424718726,0.38126038784765,0.255897791311334,0,0.636406495851874,0,0,0.274537029736055,0,0,0,0,0.48763373908959,0,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0.655894752046633,0.202910376962704,0,0,0,0,0,0,0.844430541190656,0,0,0,0.192444225451024,0,1.08890984861323,0.941438007767792,0,0,0,0.689170200620878,4.05958087385735,0.764637207142375,2.27858874869665,2.38231775457789,4.11362273086194,3.8908398671563,5.40031437238115,5.55187623405989,0.427296284509893,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0.540911356951966,0,0,0.37428108081644,1.17206543417515,0,0,0.284136146806413,0,0.890894042497916,0,0,0.140669416410513,0.333926115068718,0,0,1.19548792950642,0.276283915531148,0,0,0,0,0.269605053441981,0.716084698702437,0,1.67693789582787,4.7896618469388,0,0,0.18553619632370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| |||
|short_description=p2@DIRC2 | |||
}} |
Revision as of 21:10, 12 September 2013
Short description: | p2@DIRC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_DIRC2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 58bp_to_ENST00000261038_5end |
EntrezGene: | DIRC2 |
HGNC: | 16628 |
UniProt: | Q96SL1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.11e-66 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.11e-66 | 42 |
myeloid leukocyte | 2.65e-59 | 72 |
defensive cell | 3.08e-58 | 48 |
phagocyte | 3.08e-58 | 48 |
macrophage dendritic cell progenitor | 2.14e-52 | 61 |
monopoietic cell | 5.39e-50 | 59 |
monocyte | 5.39e-50 | 59 |
monoblast | 5.39e-50 | 59 |
promonocyte | 5.39e-50 | 59 |
granulocyte monocyte progenitor cell | 2.48e-48 | 67 |
leukocyte | 8.85e-46 | 136 |
myeloid lineage restricted progenitor cell | 4.61e-45 | 66 |
nongranular leukocyte | 6.81e-38 | 115 |
myeloid cell | 2.09e-36 | 108 |
common myeloid progenitor | 2.09e-36 | 108 |
hematopoietic lineage restricted progenitor cell | 3.59e-35 | 120 |
hematopoietic stem cell | 8.76e-33 | 168 |
hematopoietic oligopotent progenitor cell | 2.70e-31 | 161 |
hematopoietic multipotent progenitor cell | 2.70e-31 | 161 |
hematopoietic cell | 5.04e-31 | 177 |
intermediate monocyte | 1.44e-15 | 9 |
CD14-positive, CD16-positive monocyte | 1.44e-15 | 9 |
granulocyte | 2.23e-14 | 8 |
blood cell | 4.98e-12 | 11 |
connective tissue cell | 1.13e-09 | 361 |
mesenchymal cell | 2.78e-09 | 354 |
motile cell | 8.62e-07 | 386 |
neutrophil | 9.72e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.78e-46 | 98 |
blood island | 4.78e-46 | 98 |
bone marrow | 1.07e-40 | 76 |
hemolymphoid system | 5.41e-40 | 108 |
bone element | 1.53e-36 | 82 |
skeletal element | 5.13e-35 | 90 |
immune system | 2.44e-30 | 93 |
skeletal system | 7.14e-30 | 100 |
lateral plate mesoderm | 4.45e-20 | 203 |
musculoskeletal system | 1.13e-14 | 167 |
mesoderm | 1.16e-12 | 315 |
mesoderm-derived structure | 1.16e-12 | 315 |
presumptive mesoderm | 1.16e-12 | 315 |
larynx | 8.15e-12 | 9 |
blood | 8.39e-11 | 15 |
haemolymphatic fluid | 8.39e-11 | 15 |
organism substance | 8.39e-11 | 15 |
connective tissue | 2.70e-09 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.