FFCP PHASE1:Hg19::chr2:87755107..87755119,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=28717|TSSclassifier=S|UniProt=|association_with_transcript=46bp_to_ENST00000423846_5end|coexpression_cluster_id=C364|description=CAGE_peak_4_at_LINC00152_5end|id=chr2:87755107..87755119,+|ontology_enrichment_celltype=CL:0002057!7.81e-36!42;CL:0000860!1.64e-32!45;CL:0000839!2.10e-21!70;CL:0002009!3.24e-20!65;CL:0002194!4.37e-20!63;CL:0000576!4.37e-20!63;CL:0000040!4.37e-20!63;CL:0000559!4.37e-20!63;CL:0000557!1.33e-19!71;CL:0000766!1.80e-16!76;CL:0000763!8.16e-12!112;CL:0000049!8.16e-12!112;CL:0002031!2.43e-09!124;CL:0002087!2.28e-07!119;CL:0000738!7.67e-07!140|ontology_enrichment_celltype_v019=CL:0000860;3.87e-50;33!CL:0002057;3.87e-50;33!CL:0000473;6.78e-34;39!CL:0000234;6.78e-34;39!CL:0000576;1.09e-22;48!CL:0000766;1.06e-11;69!CL:0002166;4.51e-07;3|ontology_enrichment_celltype_v019_2=CL:0000860,2.58e-41,42;CL:0002057,2.58e-41,42;CL:0000473,4.98e-35,48;CL:0000234,4.98e-35,48;CL:0002194,2.93e-26,59;CL:0000576,2.93e-26,59;CL:0000040,2.93e-26,59;CL:0000559,2.93e-26,59;CL:0002009,3.92e-25,61;CL:0000839,1.29e-22,66;CL:0000557,3.71e-22,67;CL:0000766,4.66e-20,72;CL:0000763,1.09e-11,108;CL:0000049,1.09e-11,108;CL:0002087,1.11e-09,115;CL:0002031,5.61e-09,120;CL:0002166,2.71e-07,3;CL:0000738,4.18e-07,136|ontology_enrichment_development_v019=CL:0002057;3.27e-30;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!5.31e-18!80;UBERON:0001474!1.48e-17!86;UBERON:0004765!1.61e-16!101;UBERON:0001434!1.61e-16!101;UBERON:0002405!1.53e-12!115;UBERON:0002193!5.40e-12!112;UBERON:0002390!5.84e-12!102;UBERON:0003061!5.84e-12!102;UBERON:0002204!3.71e-11!167;UBERON:0001737!7.07e-11!9|ontology_enrichment_uberon_v019=UBERON:0001737;1.33e-17;9!UBERON:0001557;1.33e-17;9|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.07e-20,76;UBERON:0004765,1.07e-19,90;UBERON:0001474,4.87e-18,82;UBERON:0001737,7.58e-18,9;UBERON:0002405,1.73e-17,93;UBERON:0001434,8.00e-17,100;UBERON:0002193,7.35e-14,108;UBERON:0002390,9.10e-14,98;UBERON:0003061,9.10e-14,98;UBERON:0002204,4.71e-12,167;UBERON:0001557,1.49e-07,19;UBERON:0003081,1.72e-07,203|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,18.8251041006497,13.2592796165275,18.2577522596843,10.2465887746006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45398238779565,1.88937971844405,3.39617685662943,0.929716147622738,3.70051099219643,8.05236564327269,8.63077176966451,15.8819638048042,18.9185783910868,2.06847408441971,14.846147722428,12.1883837934908,1.69418105588344,4.36649840092553,6.74170453335254,2.14258724659632,4.49300637906531,12.1474053901818,2.63881040149373,6.38283704389222,9.80316926225197,2.90209238628584,5.6738522469114,4.9825779919646,7.5374599577023,29.2030434315313,24.5423394516782,2.42159801053347,5.89244217580104,6.96217252369946,0.211255286311942,0.212604299965044,0.209658645508376,0.112328631146495,0,0.16072558669708,0,0.39783335439818,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,1.00311897234407,0,0,0,0.445641827540694,0.883817722424512,1.32920336750173,0.812411591295047,0.768547918354051,0.260118695119756,1.31550323682941,0,0.869409257205157,0,0,0,1.58633079776593,0,0.68725489096526,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,1.53435074212236,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,6.88527740228738,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.6455669246474,0.0974370051611986,0.252433774244115,0,0.80823028409406,0,0,0.169560592310488,0,0,0,0,0,0,0.10366105501537,2.27088765788066,0.36497735907583,0,0,0,0,0,1.65629520055781,1.51726221070292,1.44606617930089,2.09558548191549,2.17879444092406,1.89816495288877,1.61797569792197,2.35465758150415,1.92373578473195,0,0,0,0,0,0,0,0,0,2.05881372358231,0.109750285408626,0,0,0,0,0,0,10.0859452328317,1.76113041353732,0,2.31492756288305,3.04406643575357,0,0,0,0,0,1.87467667973554,3.69560682037491,1.84307626415102,0,0,0,0,0.704387472105808,0.207328115540772,0,0,0.063497894292169,0,0,0,0,0.600686115687835,1.71495859578347,0,0,0,0,0,5.917119267892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.5582143024431,0,0,0,0.112085143993527,0,0,0,0,0,0,0,8.93114252314428,0,0,0,0,0,0,4.36738809214695,5.17444067511769,2.99634588564476,1.28855556491985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.06424511850606,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,0.877039506583738,0.784306353074702,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,4.21121951232128,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,1.00387946542836,0.589494246078727,0,0,0,0,0,0,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,1.35227839237992,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=28717 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=46bp_to_ENST00000423846_5end | |||
|coexpression_cluster_id=C364 | |||
|description=CAGE_peak_4_at_LINC00152_5end | |||
|id=chr2:87755107..87755119,+ | |||
|ontology_enrichment_celltype=CL:0002057!7.81e-36!42;CL:0000860!1.64e-32!45;CL:0000839!2.10e-21!70;CL:0002009!3.24e-20!65;CL:0002194!4.37e-20!63;CL:0000576!4.37e-20!63;CL:0000040!4.37e-20!63;CL:0000559!4.37e-20!63;CL:0000557!1.33e-19!71;CL:0000766!1.80e-16!76;CL:0000763!8.16e-12!112;CL:0000049!8.16e-12!112;CL:0002031!2.43e-09!124;CL:0002087!2.28e-07!119;CL:0000738!7.67e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.87e-50;33!CL:0002057;3.87e-50;33!CL:0000473;6.78e-34;39!CL:0000234;6.78e-34;39!CL:0000576;1.09e-22;48!CL:0000766;1.06e-11;69!CL:0002166;4.51e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.58e-41,42;CL:0002057,2.58e-41,42;CL:0000473,4.98e-35,48;CL:0000234,4.98e-35,48;CL:0002194,2.93e-26,59;CL:0000576,2.93e-26,59;CL:0000040,2.93e-26,59;CL:0000559,2.93e-26,59;CL:0002009,3.92e-25,61;CL:0000839,1.29e-22,66;CL:0000557,3.71e-22,67;CL:0000766,4.66e-20,72;CL:0000763,1.09e-11,108;CL:0000049,1.09e-11,108;CL:0002087,1.11e-09,115;CL:0002031,5.61e-09,120;CL:0002166,2.71e-07,3;CL:0000738,4.18e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;3.27e-30;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.31e-18!80;UBERON:0001474!1.48e-17!86;UBERON:0004765!1.61e-16!101;UBERON:0001434!1.61e-16!101;UBERON:0002405!1.53e-12!115;UBERON:0002193!5.40e-12!112;UBERON:0002390!5.84e-12!102;UBERON:0003061!5.84e-12!102;UBERON:0002204!3.71e-11!167;UBERON:0001737!7.07e-11!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.33e-17;9!UBERON:0001557;1.33e-17;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.07e-20,76;UBERON:0004765,1.07e-19,90;UBERON:0001474,4.87e-18,82;UBERON:0001737,7.58e-18,9;UBERON:0002405,1.73e-17,93;UBERON:0001434,8.00e-17,100;UBERON:0002193,7.35e-14,108;UBERON:0002390,9.10e-14,98;UBERON:0003061,9.10e-14,98;UBERON:0002204,4.71e-12,167;UBERON:0001557,1.49e-07,19;UBERON:0003081,1.72e-07,203 | |||
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|short_description=p4@LINC00152 | |||
}} |
Revision as of 20:07, 12 September 2013
Short description: | p4@LINC00152 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_LINC00152_5end |
Coexpression cluster: | C364_CD14_immature_CD14CD16_Aortic_CD4_Reticulocytes_Basophils |
Association with transcript: | 46bp_to_ENST00000423846_5end |
EntrezGene: | NA |
HGNC: | 28717 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.58e-41 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.58e-41 | 42 |
defensive cell | 4.98e-35 | 48 |
phagocyte | 4.98e-35 | 48 |
monopoietic cell | 2.93e-26 | 59 |
monocyte | 2.93e-26 | 59 |
monoblast | 2.93e-26 | 59 |
promonocyte | 2.93e-26 | 59 |
macrophage dendritic cell progenitor | 3.92e-25 | 61 |
myeloid lineage restricted progenitor cell | 1.29e-22 | 66 |
granulocyte monocyte progenitor cell | 3.71e-22 | 67 |
myeloid leukocyte | 4.66e-20 | 72 |
myeloid cell | 1.09e-11 | 108 |
common myeloid progenitor | 1.09e-11 | 108 |
nongranular leukocyte | 1.11e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 5.61e-09 | 120 |
epithelial cell of Malassez | 2.71e-07 | 3 |
leukocyte | 4.18e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.07e-20 | 76 |
skeletal element | 1.07e-19 | 90 |
bone element | 4.87e-18 | 82 |
larynx | 7.58e-18 | 9 |
immune system | 1.73e-17 | 93 |
skeletal system | 8.00e-17 | 100 |
hemolymphoid system | 7.35e-14 | 108 |
hematopoietic system | 9.10e-14 | 98 |
blood island | 9.10e-14 | 98 |
musculoskeletal system | 4.71e-12 | 167 |
upper respiratory tract | 1.49e-07 | 19 |
lateral plate mesoderm | 1.72e-07 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.