FFCP PHASE1:Mm9::chr11:49944844..49944928,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=76795|HGNC=|MCL_coexpression_id=866|UniProt=Q5SVR0|association_with_transcript=0bp_to_ENSMUST00000093138,ENSMUST00000101270,ENSMUST00000147628,NM_029745,uc007iro.1,uc007irp.1,uc007irq.1,uc007irr.1_5end|description=CAGE_peak_1_at_Tbc1d9b_5end|id=chr11:49944844..49944928,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.32e-14!73;UBERON:0005743!1.32e-14!73;UBERON:0000073!1.06e-13!75;UBERON:0001016!1.06e-13!75;UBERON:0000955!2.40e-12!50;UBERON:0006238!2.40e-12!50;UBERON:0001049!2.82e-12!52;UBERON:0005068!2.82e-12!52;UBERON:0006241!2.82e-12!52;UBERON:0007135!2.82e-12!52;UBERON:0002616!6.32e-12!49;UBERON:0004121!2.73e-11!102;UBERON:0000924!2.73e-11!102;UBERON:0006601!2.73e-11!102;UBERON:0002346!2.88e-10!71;UBERON:0003075!2.88e-10!71;UBERON:0007284!2.88e-10!71;UBERON:0004111!7.62e-09!122;UBERON:0000025!1.41e-08!114;UBERON:0000033!4.09e-08!63;UBERON:0003080!1.55e-07!40;UBERON:0002020!3.95e-07!34;UBERON:0000475!4.16e-07!200;UBERON:0002780!4.65e-07!39;UBERON:0001890!4.65e-07!39;UBERON:0006240!4.65e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.32e-14,73;UBERON:0001016,1.06e-13,75;UBERON:0000073,2.74e-13,54;UBERON:0001049,2.82e-12,52;UBERON:0005068,2.82e-12,52;UBERON:0006241,2.82e-12,52;UBERON:0007135,2.82e-12,52;UBERON:0000955,9.33e-11,47;UBERON:0006238,9.33e-11,47;UBERON:0002616,2.37e-10,46;UBERON:0004121,3.20e-09,95;UBERON:0000924,3.20e-09,95;UBERON:0006601,3.20e-09,95;UBERON:0004111,7.62e-09,122;UBERON:0000025,1.41e-08,114;UBERON:0002346,3.25e-08,64;UBERON:0003075,3.25e-08,64;UBERON:0007284,3.25e-08,64;UBERON:0010314,1.22e-07,92;UBERON:0003080,1.55e-07,40;UBERON:0002020,3.95e-07,34;UBERON:0002780,4.65e-07,39;UBERON:0001890,4.65e-07,39;UBERON:0006240,4.65e-07,39|phase1_expression=32.3500671151684,36.9913932097723,36.8549383905524,51.7213801334679,51.5922601844738,19.6418748136911,24.0621019813391,37.3166404746155,4.78681655315667,6.55380673701582,10.2730780935303,11.8860516903051,34.7537481760348,35.7549445893699,20.3196954707554,22.2722794128809,23.0855419782288,32.0194097838611,31.8105485965314,26.3121584114779,47.4541559042969,39.7163804803541,39.4411681599792,22.2389467682835,22.4821095445827,31.5827580263261,24.9841957772263,20.6852383378453,40.2849649247513,29.7395553116718,20.399206980288,19.6859508772486,19.6820732027062,31.6963362030877,13.5760261283099,12.8000676926039,13.271008157054,39.3419732892693,29.6907430919044,31.4114246384279,39.999741186109,43.7149110373405,43.6959317728038,52.8766635497425,48.458173122928,60.0197879568699,111.88196224177,67.369773321558,132.910140554355,129.490312783473,65.3736588990443,74.7513334697852,17.6171736360623,40.6202799526353,33.6093799142464,54.7962598756567,67.0488249456691,63.4276673501254,43.9026720065327,34.3844136526821,33.5930643858275,67.0912173496882,72.0328784850023,83.6906737071701,116.686230782903,111.545378046538,115.945242770623,118.72345634436,31.2105733048518,32.1314133229424,36.3862183137891,58.5584518027797,52.566712746484,28.9078286147292,30.0954778997262,38.6071890376209,86.9915459895171,116.578539671776,102.762770748427,43.7862475264244,37.1439833025783,28.129322010065,136.520486511675,78.2240027944035,99.6244575504802,52.4438882143128,44.8470794517174,50.3278503728312,20.8247031666256,37.1056360124317,80.0025988816631,34.4169550792555,25.8389106808945,37.2395202230094,41.5856907166508,51.9711189032909,37.4986601751777,33.7452038704554,30.9145345477414,32.8605804294616,22.2532603247155,53.8971205140135,73.8935195149272,99.5493384414664,19.9171757730317,18.7486300451573,25.7817466957539,37.1097609086945,34.9566142923682,125.878933926971,39.0341985223806,48.7144765299426,58.1151053085267,50.0399166634707,65.9672647031304,127.67725679095,67.9786161269528,44.9704000020925,40.6920853896942,33.6475047890611,31.5803371398363,38.7900202508178,50.325775528893,75.5374456289792,83.3597893117551,38.5740153364973,25.9998820177847,26.3957201637099,24.9057645063207,107.549679092663,113.917650101838,39.3298122113266,100.470457071136,105.866199334757,100.361625522268,98.4804466821289,46.031392460343,46.1549860963445,59.1371254734799,38.9317433389977,27.1951725792051,24.1397209655147,33.3114940139896,30.8944876563216,37.4881110323816,26.9038812598185,33.3578139432635,41.9099460597205,30.3950870035308,32.7153518690327,39.2371006885606,36.1672958505498,39.4827093900349,42.8350164822265,36.6292202806139,35.8261680273288,29.4929538671559,30.3670530395364,30.4054944353284,25.8907215669377,22.7490278181663,26.6491850962302,35.7484550733667,33.8434478605535,26.2254091908543,34.18248987831,29.5100741539581,39.4666857201033,34.2284487820039,31.8484880313445,46.2092214411378,46.199196026405,48.9596757099043,61.0639205359692,87.0600387055487,34.0614266975431,50.2236550135373,24.5939026997096,26.2344548158338,29.9585306699966,34.536479634321,34.6895662352149,31.5776822259716,31.9579051869099,36.5387377389274,40.8453407715547,31.4169011000337,42.5766850168063,38.992817423824,45.8397898413653,27.2333942842115,35.8454291857861,29.7778604496338,27.0768974885057,31.5581659884625,31.3623044881784,39.1784024078604,41.3801337352879,47.3009297689444,44.7258748378195,47.7276132637779,54.5415464534358,42.6891783005494,23.1914696945371,25.5526693647164,21.3619006765611,25.7632354163399,24.3588931349941,23.1709525121092,31.3588789821384,29.6707464998315,19.7684217495419,21.5652309791032,37.9583766621873,43.3732365629239,41.1703571053792,40.1850206289083,39.5603687517961,62.631331466479,25.7708320007859,33.8967150999414,35.4767229270143,33.5607055052558,42.3790831327794,49.0369900225188,51.9055503301745,52.1772326991492,52.2656667571109,60.5928120898451,52.9278506531834,56.1226191064161,58.7275177840937,73.8877291302434,77.7785127860755,29.0140921081231,34.2161565417868,120.412942490844,120.376402130193,44.5903051424557,32.5687496093641,30.6042972833769,32.0159770323244,40.4995987737662,44.2092276212221,44.7825334905612,49.5383928880457,38.8618273607899,41.7925876813176,39.1334900167058,69.0840830306885,52.0920112714346,51.2828938561695,47.0743312531835,52.2955289822937,73.0098260869796,33.7465084255424,31.7439734812989,35.2691499143529,49.0201142182083,53.8011508901873,43.9328098385976,35.989839218273,33.5107535681638,45.5092931427575,55.8718625447493,73.2262357062127,48.6828636227917,32.0508747375732,39.7131159213056,37.0803070604655,37.0641088312352,49.4081624757735,49.8583532424427,62.7197795176074,43.8836094079138,41.7309179601726,59.5426674748397,51.7742834236247,34.5533873129238,34.6799318336896,30.9174370968123,31.1867709515616,39.9328746182896,130.539412615399,35.3702723251555,35.292154421711,27.7791791054568,22.6042148405629,29.5259531877414,27.4533807847827,43.3444996484331,45.0643676482179,38.8341926390431,17.184071124272,28.3120714255116,37.614101418467,28.0813886136683,29.899626330069,29.6973086694802,33.7160865962052,34.6317979489158,31.1489570960995,39.7917968005804,67.7259851264749,13.5286305284206,36.1830041426429,33.918990543705,43.3626150007226,40.814504218963,40.380513992296,50.6983270949657,43.0976513833475,43.3069092478186,21.7425708743405,22.4663404881135,39.1853789578941,48.4513264543492,40.6735390372716,35.5983054959158,35.9843658291638,36.9547319893153,36.5394166540705,33.525522668629,35.2372910319035,38.0271965208449,35.0875124276205,38.983152295901,34.9248985154396,42.5431923940911,34.4630183095121,15.3170307828105,13.7262200612498,13.9344231582185,46.5586921617579,51.0496333227215,49.6340901764288,35.3707825480459,105.330141847426,89.2307911334965,75.493338787177,83.6427449621519,77.8494916016905,79.4695722933945,98.9566005580508,84.3778125289757,89.1635982383957,93.8004786597303,94.750137050583,19.0968719554885,29.9268655050773,31.9271842760231,32.3331933700831,24.105513702218,31.0695529280524,35.1149829926552,33.3776792727009,31.4500825399979,30.8290598351833,32.1918710860604,32.8209834011773,32.0253955546998,36.8144626327998,35.8971680972583,35.7220268462305,35.5764880650706,38.1960256518136,33.3789579650678,35.9165365127929,34.629794490927,29.1060322101313,35.2885561122035,36.0459113248175,33.032392525781,37.399656688121,31.2806833612441,34.1990624869196,35.7164819414616,37.0353899294107,39.50546103535,40.5838467387321,38.8769491011205,33.4663576961687,33.9515635326809,45.7153357626441,40.7040998695011,36.9578212963073,38.6402430779064,36.6181755738396,31.5340256443773|short_description=p1@Tbc1d9b}} | ||
|EntrezGene=76795 | |||
|HGNC= | |||
|MCL_coexpression_id=866 | |||
|UniProt=Q5SVR0 | |||
|association_with_transcript=0bp_to_ENSMUST00000093138,ENSMUST00000101270,ENSMUST00000147628,NM_029745,uc007iro.1,uc007irp.1,uc007irq.1,uc007irr.1_5end | |||
|description=CAGE_peak_1_at_Tbc1d9b_5end | |||
|id=chr11:49944844..49944928,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.32e-14!73;UBERON:0005743!1.32e-14!73;UBERON:0000073!1.06e-13!75;UBERON:0001016!1.06e-13!75;UBERON:0000955!2.40e-12!50;UBERON:0006238!2.40e-12!50;UBERON:0001049!2.82e-12!52;UBERON:0005068!2.82e-12!52;UBERON:0006241!2.82e-12!52;UBERON:0007135!2.82e-12!52;UBERON:0002616!6.32e-12!49;UBERON:0004121!2.73e-11!102;UBERON:0000924!2.73e-11!102;UBERON:0006601!2.73e-11!102;UBERON:0002346!2.88e-10!71;UBERON:0003075!2.88e-10!71;UBERON:0007284!2.88e-10!71;UBERON:0004111!7.62e-09!122;UBERON:0000025!1.41e-08!114;UBERON:0000033!4.09e-08!63;UBERON:0003080!1.55e-07!40;UBERON:0002020!3.95e-07!34;UBERON:0000475!4.16e-07!200;UBERON:0002780!4.65e-07!39;UBERON:0001890!4.65e-07!39;UBERON:0006240!4.65e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.32e-14,73;UBERON:0001016,1.06e-13,75;UBERON:0000073,2.74e-13,54;UBERON:0001049,2.82e-12,52;UBERON:0005068,2.82e-12,52;UBERON:0006241,2.82e-12,52;UBERON:0007135,2.82e-12,52;UBERON:0000955,9.33e-11,47;UBERON:0006238,9.33e-11,47;UBERON:0002616,2.37e-10,46;UBERON:0004121,3.20e-09,95;UBERON:0000924,3.20e-09,95;UBERON:0006601,3.20e-09,95;UBERON:0004111,7.62e-09,122;UBERON:0000025,1.41e-08,114;UBERON:0002346,3.25e-08,64;UBERON:0003075,3.25e-08,64;UBERON:0007284,3.25e-08,64;UBERON:0010314,1.22e-07,92;UBERON:0003080,1.55e-07,40;UBERON:0002020,3.95e-07,34;UBERON:0002780,4.65e-07,39;UBERON:0001890,4.65e-07,39;UBERON:0006240,4.65e-07,39 | |||
|phase1_expression=32.3500671151684,36.9913932097723,36.8549383905524,51.7213801334679,51.5922601844738,19.6418748136911,24.0621019813391,37.3166404746155,4.78681655315667,6.55380673701582,10.2730780935303,11.8860516903051,34.7537481760348,35.7549445893699,20.3196954707554,22.2722794128809,23.0855419782288,32.0194097838611,31.8105485965314,26.3121584114779,47.4541559042969,39.7163804803541,39.4411681599792,22.2389467682835,22.4821095445827,31.5827580263261,24.9841957772263,20.6852383378453,40.2849649247513,29.7395553116718,20.399206980288,19.6859508772486,19.6820732027062,31.6963362030877,13.5760261283099,12.8000676926039,13.271008157054,39.3419732892693,29.6907430919044,31.4114246384279,39.999741186109,43.7149110373405,43.6959317728038,52.8766635497425,48.458173122928,60.0197879568699,111.88196224177,67.369773321558,132.910140554355,129.490312783473,65.3736588990443,74.7513334697852,17.6171736360623,40.6202799526353,33.6093799142464,54.7962598756567,67.0488249456691,63.4276673501254,43.9026720065327,34.3844136526821,33.5930643858275,67.0912173496882,72.0328784850023,83.6906737071701,116.686230782903,111.545378046538,115.945242770623,118.72345634436,31.2105733048518,32.1314133229424,36.3862183137891,58.5584518027797,52.566712746484,28.9078286147292,30.0954778997262,38.6071890376209,86.9915459895171,116.578539671776,102.762770748427,43.7862475264244,37.1439833025783,28.129322010065,136.520486511675,78.2240027944035,99.6244575504802,52.4438882143128,44.8470794517174,50.3278503728312,20.8247031666256,37.1056360124317,80.0025988816631,34.4169550792555,25.8389106808945,37.2395202230094,41.5856907166508,51.9711189032909,37.4986601751777,33.7452038704554,30.9145345477414,32.8605804294616,22.2532603247155,53.8971205140135,73.8935195149272,99.5493384414664,19.9171757730317,18.7486300451573,25.7817466957539,37.1097609086945,34.9566142923682,125.878933926971,39.0341985223806,48.7144765299426,58.1151053085267,50.0399166634707,65.9672647031304,127.67725679095,67.9786161269528,44.9704000020925,40.6920853896942,33.6475047890611,31.5803371398363,38.7900202508178,50.325775528893,75.5374456289792,83.3597893117551,38.5740153364973,25.9998820177847,26.3957201637099,24.9057645063207,107.549679092663,113.917650101838,39.3298122113266,100.470457071136,105.866199334757,100.361625522268,98.4804466821289,46.031392460343,46.1549860963445,59.1371254734799,38.9317433389977,27.1951725792051,24.1397209655147,33.3114940139896,30.8944876563216,37.4881110323816,26.9038812598185,33.3578139432635,41.9099460597205,30.3950870035308,32.7153518690327,39.2371006885606,36.1672958505498,39.4827093900349,42.8350164822265,36.6292202806139,35.8261680273288,29.4929538671559,30.3670530395364,30.4054944353284,25.8907215669377,22.7490278181663,26.6491850962302,35.7484550733667,33.8434478605535,26.2254091908543,34.18248987831,29.5100741539581,39.4666857201033,34.2284487820039,31.8484880313445,46.2092214411378,46.199196026405,48.9596757099043,61.0639205359692,87.0600387055487,34.0614266975431,50.2236550135373,24.5939026997096,26.2344548158338,29.9585306699966,34.536479634321,34.6895662352149,31.5776822259716,31.9579051869099,36.5387377389274,40.8453407715547,31.4169011000337,42.5766850168063,38.992817423824,45.8397898413653,27.2333942842115,35.8454291857861,29.7778604496338,27.0768974885057,31.5581659884625,31.3623044881784,39.1784024078604,41.3801337352879,47.3009297689444,44.7258748378195,47.7276132637779,54.5415464534358,42.6891783005494,23.1914696945371,25.5526693647164,21.3619006765611,25.7632354163399,24.3588931349941,23.1709525121092,31.3588789821384,29.6707464998315,19.7684217495419,21.5652309791032,37.9583766621873,43.3732365629239,41.1703571053792,40.1850206289083,39.5603687517961,62.631331466479,25.7708320007859,33.8967150999414,35.4767229270143,33.5607055052558,42.3790831327794,49.0369900225188,51.9055503301745,52.1772326991492,52.2656667571109,60.5928120898451,52.9278506531834,56.1226191064161,58.7275177840937,73.8877291302434,77.7785127860755,29.0140921081231,34.2161565417868,120.412942490844,120.376402130193,44.5903051424557,32.5687496093641,30.6042972833769,32.0159770323244,40.4995987737662,44.2092276212221,44.7825334905612,49.5383928880457,38.8618273607899,41.7925876813176,39.1334900167058,69.0840830306885,52.0920112714346,51.2828938561695,47.0743312531835,52.2955289822937,73.0098260869796,33.7465084255424,31.7439734812989,35.2691499143529,49.0201142182083,53.8011508901873,43.9328098385976,35.989839218273,33.5107535681638,45.5092931427575,55.8718625447493,73.2262357062127,48.6828636227917,32.0508747375732,39.7131159213056,37.0803070604655,37.0641088312352,49.4081624757735,49.8583532424427,62.7197795176074,43.8836094079138,41.7309179601726,59.5426674748397,51.7742834236247,34.5533873129238,34.6799318336896,30.9174370968123,31.1867709515616,39.9328746182896,130.539412615399,35.3702723251555,35.292154421711,27.7791791054568,22.6042148405629,29.5259531877414,27.4533807847827,43.3444996484331,45.0643676482179,38.8341926390431,17.184071124272,28.3120714255116,37.614101418467,28.0813886136683,29.899626330069,29.6973086694802,33.7160865962052,34.6317979489158,31.1489570960995,39.7917968005804,67.7259851264749,13.5286305284206,36.1830041426429,33.918990543705,43.3626150007226,40.814504218963,40.380513992296,50.6983270949657,43.0976513833475,43.3069092478186,21.7425708743405,22.4663404881135,39.1853789578941,48.4513264543492,40.6735390372716,35.5983054959158,35.9843658291638,36.9547319893153,36.5394166540705,33.525522668629,35.2372910319035,38.0271965208449,35.0875124276205,38.983152295901,34.9248985154396,42.5431923940911,34.4630183095121,15.3170307828105,13.7262200612498,13.9344231582185,46.5586921617579,51.0496333227215,49.6340901764288,35.3707825480459,105.330141847426,89.2307911334965,75.493338787177,83.6427449621519,77.8494916016905,79.4695722933945,98.9566005580508,84.3778125289757,89.1635982383957,93.8004786597303,94.750137050583,19.0968719554885,29.9268655050773,31.9271842760231,32.3331933700831,24.105513702218,31.0695529280524,35.1149829926552,33.3776792727009,31.4500825399979,30.8290598351833,32.1918710860604,32.8209834011773,32.0253955546998,36.8144626327998,35.8971680972583,35.7220268462305,35.5764880650706,38.1960256518136,33.3789579650678,35.9165365127929,34.629794490927,29.1060322101313,35.2885561122035,36.0459113248175,33.032392525781,37.399656688121,31.2806833612441,34.1990624869196,35.7164819414616,37.0353899294107,39.50546103535,40.5838467387321,38.8769491011205,33.4663576961687,33.9515635326809,45.7153357626441,40.7040998695011,36.9578212963073,38.6402430779064,36.6181755738396,31.5340256443773 | |||
|short_description=p1@Tbc1d9b | |||
}} | |||
Revision as of 19:49, 12 September 2013
| Short description: | p1@Tbc1d9b |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Tbc1d9b_5end |
| Coexpression cluster: | MCL_coexpression_mm9:866 |
| Association with transcript: | 0bp_to_ENSMUST00000093138, ENSMUST00000101270, ENSMUST00000147628, NM_029745, uc007iro.1, uc007irp.1, uc007irq.1, uc007irr.1_5end |
| EntrezGene: | Tbc1d9b |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 1.32e-14 | 73 |
| nervous system | 1.06e-13 | 75 |
| regional part of nervous system | 2.74e-13 | 54 |
| neural tube | 2.82e-12 | 52 |
| neural rod | 2.82e-12 | 52 |
| future spinal cord | 2.82e-12 | 52 |
| neural keel | 2.82e-12 | 52 |
| brain | 9.33e-11 | 47 |
| future brain | 9.33e-11 | 47 |
| regional part of brain | 2.37e-10 | 46 |
| ectoderm-derived structure | 3.20e-09 | 95 |
| ectoderm | 3.20e-09 | 95 |
| presumptive ectoderm | 3.20e-09 | 95 |
| anatomical conduit | 7.62e-09 | 122 |
| tube | 1.41e-08 | 114 |
| neurectoderm | 3.25e-08 | 64 |
| neural plate | 3.25e-08 | 64 |
| presumptive neural plate | 3.25e-08 | 64 |
| structure with developmental contribution from neural crest | 1.22e-07 | 92 |
| anterior neural tube | 1.55e-07 | 40 |
| gray matter | 3.95e-07 | 34 |
| regional part of forebrain | 4.65e-07 | 39 |
| forebrain | 4.65e-07 | 39 |
| future forebrain | 4.65e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
