FFCP PHASE1:Hg19::chr2:54895853..54895870,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6711|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=11275|TSSclassifier=S|UniProt=|association_with_transcript=32bp_to_BC009640_5end|description=CAGE_peak_12_at_SPTBN1_5end|id=chr2:54895853..54895870,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.35e-08!34;UBERON:0003528!1.35e-08!34;UBERON:0002791!1.33e-07!33;UBERON:0001893!1.90e-07!34;UBERON:0001869!3.03e-07!32;UBERON:0005743!5.34e-07!86;UBERON:0002619!5.78e-07!22;UBERON:0001017!6.14e-07!82|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0003528,6.42e-08,34;UBERON:0002020,6.42e-08,34;UBERON:0000073,4.19e-07,53;UBERON:0002616,4.19e-07,53;UBERON:0001049,4.95e-07,56;UBERON:0005068,4.95e-07,56;UBERON:0006241,4.95e-07,56;UBERON:0007135,4.95e-07,56;UBERON:0002791,7.70e-07,32|phase1_expression=1.63510541343501,2.5692062866918,0.845726424575827,2.00146596706261,0.893922188854576,3.48935409640147,0,0.631719873426831,1.04474251279935,0.245733936501509,0,1.96597234917155,1.05506791291381,0.495065411840187,0.994192127183747,3.36162573225888,3.61616716814386,1.46062018077475,0.487932798790507,0,0.204000691244253,0,1.14494394852423,0.547497700291537,0.125542639594803,0.382067028739756,0.246301768349837,0.314843125254717,0,0,0,0.919421224478927,0,0,0,0.142169232487422,0,0,0,0.217010870715852,0.223915474239924,0,0,0,0,0,0,0.411167888021826,0.309706370895104,0.28769239232215,0,0,0,0,0,0,0,0.224723484445085,0.306083892370903,0,0.639337125799041,0,0.199463657621632,0,0,0,0,0.251248665256743,0.521482918420201,0.434377689410233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,1.70763890732835,1.17447437874188,0,0,0,0.263384084775077,0.786839080455332,1.57204305099666,0.822405995998037,0.334372990781356,0.977766799900771,0,1.94826728407911,0.111410456885174,0.294605907474837,0,0.270803863765016,0.896639238079726,0.780356085359269,0.822189523018381,0.276350017785848,0.579606171470105,0.296573126324121,0.802622484269139,0,0.566546713487831,0,0,0.253019692019503,0.637130828648193,0,0,0,0,0,0.236777252044017,0,0.604820229674197,1.60464117470104,0.579297615531196,0,0.670700859703636,0.383587685530591,0,1.00267582127178,1.59331170856906,0,0,1.41802225746102,1.99556457716308,1.22968699970376,0.392937226493138,0.728590576585084,0.741568885568859,0,0,0,0.238490624305342,0,0,0.39752481473341,0.860234595106124,0,1.13061588384802,2.09749718104953,1.6507082516404,0.417989933073621,2.06733407335463,1.42306505074684,0,2.41697590265488,0.760272105718513,4.39311703586705,0.367663080345869,3.24056779152704,0.803697554556718,0,0.225222960966644,0,0,1.09921046358244,0,0,0.436094052142534,2.48485975847659,2.15271869829786,1.32409180813219,0.573673241497627,1.06400514659507,2.24271040056923,2.1349799145941,1.48000529050296,0,0.538842688278752,0.326923806226917,0.302714855289863,1.15235184896,0,0.624320153660641,0,1.04614076386261,0.352303495931295,0.161872944368132,0.140450806702248,0.816616685019573,0.859840221182376,0.206651562351531,0,0.989067717114227,0,0,0.673344455816265,0.125118519871964,0.277064115484183,0,1.5324389789951,0.300476117813194,1.24775401476023,0.89694817844431,0.427114777637135,0.423863802319124,0.900273288253207,0.206105058476878,1.28820270022815,0.37223371266318,0.843881661206331,0.292311015483596,1.00973509697646,1.01254888506529,0.484938170456436,0.355009592516614,0.604512589365842,0.67824236924195,0.386521706326594,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.829288440122964,0.504641701751257,1.82488679537915,1.56449532329816,1.92972281457866,0,0.464367928031979,2.16563844500876,0.591534000199219,1.01150814046861,0.482022059766964,0.772057809126758,0.217879444092406,0.474541238222193,0.539325232640658,0.392442930250692,1.15424147083917,0,0,0,0,2.53510069643662,4.91413608338813,0,0.441463099414651,2.21379189377604,0,0.439001141634502,1.1240175325762,0.402115889646523,0.648119116109707,0,0,2.88662684050547,0.34779121492523,0,1.01056513432752,1.38895653772983,3.61482889245737,0,0,0,0,0,0,0.335964256397719,0.567100388969546,0.985143749731331,0,0.766765358330422,0,0.088048434013226,0,0,0.12624243342638,0.380987365753014,1.14596527667483,1.17217447210047,1.71072446022705,1.02827492703324,1.50171528921959,2.00078502841405,0,0,0.51336800074665,0.517086863031111,0,0,0,0,0,0,0,0.428933980974443,0.542621605391443,0.823240336780769,0,0.355391948742546,0.791951872933429,3.01439377059586,1.74306691720059,1.69954085009497,0,0,2.10833939483032,1.67737398844108,1.14861935834114,0,1.88215698667853,1.02738161275192,0.358121926479791,0.672510863961164,0.591092280605782,0.862510299438069,1.15508732651774,0,2.60279707715243,0,1.00509759200609,2.55175500661265,0,0,0,0.12269149171914,1.00034104211935,0,0.831883446123229,1.60586089917446,1.41932173530541,0.5857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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6711 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=11275 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=32bp_to_BC009640_5end | |||
|description=CAGE_peak_12_at_SPTBN1_5end | |||
|id=chr2:54895853..54895870,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.35e-08!34;UBERON:0003528!1.35e-08!34;UBERON:0002791!1.33e-07!33;UBERON:0001893!1.90e-07!34;UBERON:0001869!3.03e-07!32;UBERON:0005743!5.34e-07!86;UBERON:0002619!5.78e-07!22;UBERON:0001017!6.14e-07!82 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,6.42e-08,34;UBERON:0002020,6.42e-08,34;UBERON:0000073,4.19e-07,53;UBERON:0002616,4.19e-07,53;UBERON:0001049,4.95e-07,56;UBERON:0005068,4.95e-07,56;UBERON:0006241,4.95e-07,56;UBERON:0007135,4.95e-07,56;UBERON:0002791,7.70e-07,32 | |||
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| |||
|short_description=p12@SPTBN1 | |||
}} |
Revision as of 19:00, 12 September 2013
Short description: | p12@SPTBN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_SPTBN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 32bp_to_BC009640_5end |
EntrezGene: | SPTBN1 |
HGNC: | 11275 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brain grey matter | 6.42e-08 | 34 |
gray matter | 6.42e-08 | 34 |
regional part of nervous system | 4.19e-07 | 53 |
regional part of brain | 4.19e-07 | 53 |
neural tube | 4.95e-07 | 56 |
neural rod | 4.95e-07 | 56 |
future spinal cord | 4.95e-07 | 56 |
neural keel | 4.95e-07 | 56 |
regional part of telencephalon | 7.70e-07 | 32 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.