FFCP PHASE1:Hg19::chr2:239197201..239197212,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8864|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8846|TSSclassifier=S|UniProt=O15055|association_with_transcript=0bp_to_ENST00000254658,NM_022817,uc002vyc.2,uc010znv.1_5end|description=CAGE_peak_5_at_PER2_5end|id=chr2:239197201..239197212,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002032;4.70e-09;1!CL:0000511;4.70e-09;1!CL:0002625;4.70e-09;1!CL:0000557;4.70e-09;1!CL:0000216;4.70e-09;1|ontology_enrichment_celltype_v019_2=CL:0000511,1.89e-09,1;CL:0002625,1.89e-09,1;CL:0000216,1.89e-09,1|ontology_enrichment_development_v019=UBERON:0008801;1.60e-09;1!UBERON:0010115;4.70e-09;1!UBERON:0008425;4.70e-09;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5662;4.70e-09;1|ontology_enrichment_disease_v019_2=DOID:5662,3.58e-09,1|ontology_enrichment_uberon=UBERON:0007023!9.13e-26!115;UBERON:0001049!9.02e-11!57;UBERON:0005068!9.02e-11!57;UBERON:0006241!9.02e-11!57;UBERON:0007135!9.02e-11!57;UBERON:0002616!3.75e-09!59;UBERON:0002780!1.52e-08!41;UBERON:0001890!1.52e-08!41;UBERON:0006240!1.52e-08!41;UBERON:0003080!4.05e-08!42;UBERON:0000955!1.89e-07!69;UBERON:0006238!1.89e-07!69;UBERON:0000062!4.18e-07!511;UBERON:0001017!4.66e-07!82;UBERON:0001893!5.76e-07!34|ontology_enrichment_uberon_v019=UBERON:0003135;2.04e-11;11!UBERON:0001831;1.60e-09;1!UBERON:0001567;1.60e-09;1!UBERON:0000473;3.12e-09;8!UBERON:0002902;4.70e-09;1!UBERON:0002022;4.70e-09;1!UBERON:0002363;4.70e-09;1!UBERON:0001136;4.70e-09;1!UBERON:0001301;4.70e-09;1!UBERON:0001343;4.70e-09;1!UBERON:0009899;4.70e-09;1!UBERON:0004910;4.70e-09;1!UBERON:0004813;4.70e-09;1!UBERON:0001950;5.06e-09;20!UBERON:0005904;1.20e-08;4!UBERON:0002619;3.20e-08;22!UBERON:0000956;3.01e-07;25!UBERON:0000203;3.01e-07;25!UBERON:0002021;4.41e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.34e-12,114;UBERON:0003135,1.74e-11,11;UBERON:0001831,1.60e-09,1;UBERON:0001567,1.60e-09,1;UBERON:0008801,1.60e-09,1;UBERON:0001136,1.89e-09,1;UBERON:0001343,1.89e-09,1;UBERON:0004910,1.89e-09,1;UBERON:0005154,1.89e-09,1;UBERON:0005295,1.89e-09,1;UBERON:0004813,1.89e-09,1;UBERON:0005297,1.89e-09,1;UBERON:0005294,1.89e-09,1;UBERON:0010141,1.89e-09,1;UBERON:0005891,1.89e-09,1;UBERON:0000473,2.20e-09,8;UBERON:0002363,4.19e-09,1;UBERON:0007645,4.19e-09,1;UBERON:0007647,4.19e-09,1;UBERON:0010115,4.19e-09,1;UBERON:0001301,7.85e-09,1;UBERON:0001950,8.30e-09,20;UBERON:0002902,8.49e-09,1;UBERON:0009899,8.49e-09,1;UBERON:0002022,9.17e-09,1;UBERON:0005904,9.94e-09,4;UBERON:0002619,5.02e-08,22;UBERON:0000956,4.45e-07,25;UBERON:0000203,4.45e-07,25;UBERON:0002021,7.40e-07,5|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0.436882744260345,0,0.123766352960047,0,0,0,0,0,0,0.204000691244253,0,0,0.273748850145768,0.125542639594803,0,0.0821005894499457,0,0.393364276848904,0.383829398097213,0.619264493264304,0,0.30120591877825,0.739508020333575,0,0,0.880801318004542,0,0.401088894940283,0.217010870715852,0,0,0,0.145398238779565,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0.211255286311942,0.212604299965044,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0.786021525498329,0.205601498999509,0,0.32592226663359,0,0,0,0.294605907474837,0,0,0.128091319725675,0,0,0,0.289803085735052,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0.604820229674197,0.267440195783507,0.434473211648397,0,0,0,0,0,0,0,0.486634870302636,0,0,0,1.11332214173056,0,0,0,0.174129737299267,0.26591592103773,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0,0.208994966536811,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0.302714855289863,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0.427114777637135,0.211931901159562,0,0.206105058476878,0,0.18611685633159,0,0.194874010322397,0.252433774244115,0.0920498986422993,0.161646056818812,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,1.38134921352481,0.464367928031979,0,0,0,0,0.220587945464788,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0.368965315629341,0,0,0,0,0.462942225792648,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0.088048434013226,0.829312462163088,0.576479813667846,0.37872730027914,0,0,0,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0,0,0,1.41849132023278,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0.591092280605782,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0.473107245101804,0.234282829985426,0.601892199455438,0,0,0,0,0,0.195801157462741,0.343143423810856,0.206768026122887,0.431428401637234,0.426910231213777,0.303127571446259,0,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0.184161977871793,0,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0.183138929636687,0.165018999841176,0,0,1.606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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8864 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8846 | |||
|TSSclassifier=S | |||
|UniProt=O15055 | |||
|association_with_transcript=0bp_to_ENST00000254658,NM_022817,uc002vyc.2,uc010znv.1_5end | |||
|description=CAGE_peak_5_at_PER2_5end | |||
|id=chr2:239197201..239197212,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002032;4.70e-09;1!CL:0000511;4.70e-09;1!CL:0002625;4.70e-09;1!CL:0000557;4.70e-09;1!CL:0000216;4.70e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,1.89e-09,1;CL:0002625,1.89e-09,1;CL:0000216,1.89e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0008801;1.60e-09;1!UBERON:0010115;4.70e-09;1!UBERON:0008425;4.70e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5662;4.70e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,3.58e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!9.13e-26!115;UBERON:0001049!9.02e-11!57;UBERON:0005068!9.02e-11!57;UBERON:0006241!9.02e-11!57;UBERON:0007135!9.02e-11!57;UBERON:0002616!3.75e-09!59;UBERON:0002780!1.52e-08!41;UBERON:0001890!1.52e-08!41;UBERON:0006240!1.52e-08!41;UBERON:0003080!4.05e-08!42;UBERON:0000955!1.89e-07!69;UBERON:0006238!1.89e-07!69;UBERON:0000062!4.18e-07!511;UBERON:0001017!4.66e-07!82;UBERON:0001893!5.76e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0003135;2.04e-11;11!UBERON:0001831;1.60e-09;1!UBERON:0001567;1.60e-09;1!UBERON:0000473;3.12e-09;8!UBERON:0002902;4.70e-09;1!UBERON:0002022;4.70e-09;1!UBERON:0002363;4.70e-09;1!UBERON:0001136;4.70e-09;1!UBERON:0001301;4.70e-09;1!UBERON:0001343;4.70e-09;1!UBERON:0009899;4.70e-09;1!UBERON:0004910;4.70e-09;1!UBERON:0004813;4.70e-09;1!UBERON:0001950;5.06e-09;20!UBERON:0005904;1.20e-08;4!UBERON:0002619;3.20e-08;22!UBERON:0000956;3.01e-07;25!UBERON:0000203;3.01e-07;25!UBERON:0002021;4.41e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.34e-12,114;UBERON:0003135,1.74e-11,11;UBERON:0001831,1.60e-09,1;UBERON:0001567,1.60e-09,1;UBERON:0008801,1.60e-09,1;UBERON:0001136,1.89e-09,1;UBERON:0001343,1.89e-09,1;UBERON:0004910,1.89e-09,1;UBERON:0005154,1.89e-09,1;UBERON:0005295,1.89e-09,1;UBERON:0004813,1.89e-09,1;UBERON:0005297,1.89e-09,1;UBERON:0005294,1.89e-09,1;UBERON:0010141,1.89e-09,1;UBERON:0005891,1.89e-09,1;UBERON:0000473,2.20e-09,8;UBERON:0002363,4.19e-09,1;UBERON:0007645,4.19e-09,1;UBERON:0007647,4.19e-09,1;UBERON:0010115,4.19e-09,1;UBERON:0001301,7.85e-09,1;UBERON:0001950,8.30e-09,20;UBERON:0002902,8.49e-09,1;UBERON:0009899,8.49e-09,1;UBERON:0002022,9.17e-09,1;UBERON:0005904,9.94e-09,4;UBERON:0002619,5.02e-08,22;UBERON:0000956,4.45e-07,25;UBERON:0000203,4.45e-07,25;UBERON:0002021,7.40e-07,5 | |||
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| |||
|short_description=p5@PER2 | |||
}} |
Revision as of 17:41, 12 September 2013
Short description: | p5@PER2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_PER2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000254658, NM_022817, uc002vyc.2, uc010znv.1_5end |
EntrezGene: | PER2 |
HGNC: | 8846 |
UniProt: | O15055 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 1.89e-09 | 1 |
seminiferous tubule epithelial cell | 1.89e-09 | 1 |
Sertoli cell | 1.89e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.34e-12 | 114 |
male reproductive organ | 1.74e-11 | 11 |
parotid gland | 1.60e-09 | 1 |
cheek | 1.60e-09 | 1 |
parotid gland primordium | 1.60e-09 | 1 |
mesothelium | 1.89e-09 | 1 |
seminiferous tubule of testis | 1.89e-09 | 1 |
epithelium of male gonad | 1.89e-09 | 1 |
epithelial cord | 1.89e-09 | 1 |
sex cord | 1.89e-09 | 1 |
seminiferous tubule epithelium | 1.89e-09 | 1 |
testis sex cord | 1.89e-09 | 1 |
genital ridge | 1.89e-09 | 1 |
primitive sex cord of indifferent gonad | 1.89e-09 | 1 |
coelomic epithelium | 1.89e-09 | 1 |
testis | 2.20e-09 | 8 |
dura mater | 4.19e-09 | 1 |
future meninx | 4.19e-09 | 1 |
ectomeninx | 4.19e-09 | 1 |
future dura mater | 4.19e-09 | 1 |
epididymis | 7.85e-09 | 1 |
neocortex | 8.30e-09 | 20 |
occipital pole | 8.49e-09 | 1 |
pole of cerebral hemisphere | 8.49e-09 | 1 |
insula | 9.17e-09 | 1 |
duct of male reproductive system | 9.94e-09 | 4 |
regional part of cerebral cortex | 5.02e-08 | 22 |
cerebral cortex | 4.45e-07 | 25 |
pallium | 4.45e-07 | 25 |
occipital lobe | 7.40e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 3.58e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.