FFCP PHASE1:Mm9::chr10:126700158..126700189,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16572|HGNC=|MCL_coexpression_id=1|UniProt=P33175|association_with_transcript=-22bp_to_ENSMUST00000169813_5end|description=CAGE_peak_1_at_Kif5a_5end|id=chr10:126700158..126700189,-|ontology_enrichment_celltype=CL:0000540!3.83e-16!33;CL:0000047!3.83e-16!33;CL:0000031!3.83e-16!33;CL:0000404!3.83e-16!33;CL:0000117!2.03e-13!23;CL:0000337!2.03e-13!23;CL:0000221!4.28e-12!44;CL:0000133!4.28e-12!44;CL:0002319!5.55e-12!43;CL:0000393!3.35e-11!39;CL:0000211!3.35e-11!39;CL:0000055!5.07e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,5.39e-19,33;CL:0000047,5.39e-19,33;CL:0000031,5.39e-19,33;CL:0000404,5.39e-19,33;CL:0000117,9.76e-16,23;CL:0000337,9.76e-16,23;CL:0000393,9.29e-14,39;CL:0000211,9.29e-14,39;CL:0000221,2.63e-13,44;CL:0000133,2.63e-13,44;CL:0002319,3.63e-13,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.05e-30!102;UBERON:0000924!1.05e-30!102;UBERON:0006601!1.05e-30!102;UBERON:0000073!1.82e-29!75;UBERON:0001016!1.82e-29!75;UBERON:0001017!2.26e-29!73;UBERON:0005743!2.26e-29!73;UBERON:0002346!9.02e-29!71;UBERON:0003075!9.02e-29!71;UBERON:0007284!9.02e-29!71;UBERON:0000033!2.01e-25!63;UBERON:0001049!3.22e-23!52;UBERON:0005068!3.22e-23!52;UBERON:0006241!3.22e-23!52;UBERON:0007135!3.22e-23!52;UBERON:0000955!2.83e-22!50;UBERON:0006238!2.83e-22!50;UBERON:0003056!7.20e-22!49;UBERON:0002616!1.12e-21!49;UBERON:0003080!6.05e-19!40;UBERON:0002020!1.75e-18!34;UBERON:0002780!2.86e-18!39;UBERON:0001890!2.86e-18!39;UBERON:0006240!2.86e-18!39;UBERON:0002791!1.31e-15!29;UBERON:0003528!1.31e-15!29;UBERON:0001893!1.31e-15!29;UBERON:0007811!9.55e-12!86;UBERON:0000153!2.42e-11!94;UBERON:0000956!4.44e-11!21;UBERON:0001869!4.44e-11!21;UBERON:0000203!4.44e-11!21;UBERON:0002619!4.61e-09!17;UBERON:0002021!5.08e-08!10;UBERON:0000411!5.08e-08!10;UBERON:0001950!5.08e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.79e-34,75;UBERON:0001017,1.03e-33,73;UBERON:0002346,2.86e-32,64;UBERON:0003075,2.86e-32,64;UBERON:0007284,2.86e-32,64;UBERON:0004121,1.82e-31,95;UBERON:0000924,1.82e-31,95;UBERON:0006601,1.82e-31,95;UBERON:0000073,1.41e-28,54;UBERON:0001049,9.32e-27,52;UBERON:0005068,9.32e-27,52;UBERON:0006241,9.32e-27,52;UBERON:0007135,9.32e-27,52;UBERON:0010371,1.33e-26,73;UBERON:0003056,5.09e-25,49;UBERON:0000955,4.26e-23,47;UBERON:0006238,4.26e-23,47;UBERON:0002616,2.11e-22,46;UBERON:0003080,1.64e-21,40;UBERON:0002020,6.57e-21,34;UBERON:0002780,1.04e-20,39;UBERON:0001890,1.04e-20,39;UBERON:0006240,1.04e-20,39;UBERON:0010314,1.69e-20,92;UBERON:0003528,1.74e-17,29;UBERON:0002791,1.74e-17,29;UBERON:0001893,1.74e-17,29;UBERON:0000956,4.13e-12,21;UBERON:0001869,4.13e-12,21;UBERON:0000203,4.13e-12,21;UBERON:0002619,1.02e-09,17;UBERON:0002021,2.76e-09,10;UBERON:0000411,2.76e-09,10;UBERON:0001950,2.76e-09,10|phase1_expression=2.88267924788629,0,0,0,0,0,0,0.258246646883153,0,0,0,0,0,0.262261207256992,0,0,0,0,0,0,48.5597186762608,0.595745707205312,0.522399578277871,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.659058548203415,0.194429899074283,0.139986421625363,0,0,0,0,0.257259436035947,0.286533439938757,0,50.9837481366186,59.2469896784677,53.8756692980252,0,0,0.449949858640699,0.988866362566974,0,0.898800331555214,1.92109152660777,35.0470889602654,42.7968824511459,32.6003690094642,121.972970340424,117.060326704355,32.092589394318,33.1625329723098,38.6071890376209,265.379273208527,291.127130834228,289.548315188019,57.6343077380947,53.6117591510121,47.4031167206652,218.041922220079,198.092438731151,234.086915594073,113.726633992836,107.063503960925,74.9325772217708,1.66597625333005,4.08086424576642,0,0,0,0.539703191637817,0,0,7.44355426698285,0,0,0,3.80277233397037,0,0,0,0,0,0,6.73684890342454,0.517875767294343,1.7813056687779,5.37804512975021,8.8294988710521,4.84292544237723,6.78251882486802,6.11461277105665,1.38233250462643,0.247194967734374,0.144599356919912,0,0.323533699894818,0,0.484875253135222,0,88.7125814944988,70.5835401961344,0,0.11981512450592,0,0,250.749530363673,375.150494311274,40.5863557324552,335.480937971094,264.154067422231,283.6306808238,250.013786387415,0.101839363850316,0.124406970610093,0.252722758433675,7.99679052368601,1.95180664444056,6.89706313300419,13.1445354757905,12.9606143338715,14.9680298132921,12.0426897067759,16.7726086961915,20.6962696591213,0.862271971731369,1.32374256117473,3.34307135911503,2.41115305670332,0.278047249225598,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0.414251545071004,0.938104239924385,0.540186184383045,0.23674473558521,0.196764231747404,0.771335564436891,0,0.268273401399619,0,0.493679549740441,0.164167464079095,0.162137619091711,0.146199987425332,0,0.134206418760372,225.22053491218,36.0166143327495,0.330418782983798,0.264450566663544,2.55945900642281,1.39342003116263,2.57734922644187,1.81515172161008,2.44615848229357,3.04361001780095,3.32170343081158,1.81168850196412,3.2673577144035,2.18852119245266,1.9496408711912,0,0.432276099749388,0.5974238197631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| ||
|EntrezGene=16572 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P33175 | |||
|association_with_transcript=-22bp_to_ENSMUST00000169813_5end | |||
|description=CAGE_peak_1_at_Kif5a_5end | |||
|id=chr10:126700158..126700189,- | |||
|ontology_enrichment_celltype=CL:0000540!3.83e-16!33;CL:0000047!3.83e-16!33;CL:0000031!3.83e-16!33;CL:0000404!3.83e-16!33;CL:0000117!2.03e-13!23;CL:0000337!2.03e-13!23;CL:0000221!4.28e-12!44;CL:0000133!4.28e-12!44;CL:0002319!5.55e-12!43;CL:0000393!3.35e-11!39;CL:0000211!3.35e-11!39;CL:0000055!5.07e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.39e-19,33;CL:0000047,5.39e-19,33;CL:0000031,5.39e-19,33;CL:0000404,5.39e-19,33;CL:0000117,9.76e-16,23;CL:0000337,9.76e-16,23;CL:0000393,9.29e-14,39;CL:0000211,9.29e-14,39;CL:0000221,2.63e-13,44;CL:0000133,2.63e-13,44;CL:0002319,3.63e-13,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.05e-30!102;UBERON:0000924!1.05e-30!102;UBERON:0006601!1.05e-30!102;UBERON:0000073!1.82e-29!75;UBERON:0001016!1.82e-29!75;UBERON:0001017!2.26e-29!73;UBERON:0005743!2.26e-29!73;UBERON:0002346!9.02e-29!71;UBERON:0003075!9.02e-29!71;UBERON:0007284!9.02e-29!71;UBERON:0000033!2.01e-25!63;UBERON:0001049!3.22e-23!52;UBERON:0005068!3.22e-23!52;UBERON:0006241!3.22e-23!52;UBERON:0007135!3.22e-23!52;UBERON:0000955!2.83e-22!50;UBERON:0006238!2.83e-22!50;UBERON:0003056!7.20e-22!49;UBERON:0002616!1.12e-21!49;UBERON:0003080!6.05e-19!40;UBERON:0002020!1.75e-18!34;UBERON:0002780!2.86e-18!39;UBERON:0001890!2.86e-18!39;UBERON:0006240!2.86e-18!39;UBERON:0002791!1.31e-15!29;UBERON:0003528!1.31e-15!29;UBERON:0001893!1.31e-15!29;UBERON:0007811!9.55e-12!86;UBERON:0000153!2.42e-11!94;UBERON:0000956!4.44e-11!21;UBERON:0001869!4.44e-11!21;UBERON:0000203!4.44e-11!21;UBERON:0002619!4.61e-09!17;UBERON:0002021!5.08e-08!10;UBERON:0000411!5.08e-08!10;UBERON:0001950!5.08e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.79e-34,75;UBERON:0001017,1.03e-33,73;UBERON:0002346,2.86e-32,64;UBERON:0003075,2.86e-32,64;UBERON:0007284,2.86e-32,64;UBERON:0004121,1.82e-31,95;UBERON:0000924,1.82e-31,95;UBERON:0006601,1.82e-31,95;UBERON:0000073,1.41e-28,54;UBERON:0001049,9.32e-27,52;UBERON:0005068,9.32e-27,52;UBERON:0006241,9.32e-27,52;UBERON:0007135,9.32e-27,52;UBERON:0010371,1.33e-26,73;UBERON:0003056,5.09e-25,49;UBERON:0000955,4.26e-23,47;UBERON:0006238,4.26e-23,47;UBERON:0002616,2.11e-22,46;UBERON:0003080,1.64e-21,40;UBERON:0002020,6.57e-21,34;UBERON:0002780,1.04e-20,39;UBERON:0001890,1.04e-20,39;UBERON:0006240,1.04e-20,39;UBERON:0010314,1.69e-20,92;UBERON:0003528,1.74e-17,29;UBERON:0002791,1.74e-17,29;UBERON:0001893,1.74e-17,29;UBERON:0000956,4.13e-12,21;UBERON:0001869,4.13e-12,21;UBERON:0000203,4.13e-12,21;UBERON:0002619,1.02e-09,17;UBERON:0002021,2.76e-09,10;UBERON:0000411,2.76e-09,10;UBERON:0001950,2.76e-09,10 | |||
|phase1_expression=2.88267924788629,0,0,0,0,0,0,0.258246646883153,0,0,0,0,0,0.262261207256992,0,0,0,0,0,0,48.5597186762608,0.595745707205312,0.522399578277871,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.659058548203415,0.194429899074283,0.139986421625363,0,0,0,0,0.257259436035947,0.286533439938757,0,50.9837481366186,59.2469896784677,53.8756692980252,0,0,0.449949858640699,0.988866362566974,0,0.898800331555214,1.92109152660777,35.0470889602654,42.7968824511459,32.6003690094642,121.972970340424,117.060326704355,32.092589394318,33.1625329723098,38.6071890376209,265.379273208527,291.127130834228,289.548315188019,57.6343077380947,53.6117591510121,47.4031167206652,218.041922220079,198.092438731151,234.086915594073,113.726633992836,107.063503960925,74.9325772217708,1.66597625333005,4.08086424576642,0,0,0,0.539703191637817,0,0,7.44355426698285,0,0,0,3.80277233397037,0,0,0,0,0,0,6.73684890342454,0.517875767294343,1.7813056687779,5.37804512975021,8.8294988710521,4.84292544237723,6.78251882486802,6.11461277105665,1.38233250462643,0.247194967734374,0.144599356919912,0,0.323533699894818,0,0.484875253135222,0,88.7125814944988,70.5835401961344,0,0.11981512450592,0,0,250.749530363673,375.150494311274,40.5863557324552,335.480937971094,264.154067422231,283.6306808238,250.013786387415,0.101839363850316,0.124406970610093,0.252722758433675,7.99679052368601,1.95180664444056,6.89706313300419,13.1445354757905,12.9606143338715,14.9680298132921,12.0426897067759,16.7726086961915,20.6962696591213,0.862271971731369,1.32374256117473,3.34307135911503,2.41115305670332,0.278047249225598,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0.414251545071004,0.938104239924385,0.540186184383045,0.23674473558521,0.196764231747404,0.771335564436891,0,0.268273401399619,0,0.493679549740441,0.164167464079095,0.162137619091711,0.146199987425332,0,0.134206418760372,225.22053491218,36.0166143327495,0.330418782983798,0.264450566663544,2.55945900642281,1.39342003116263,2.57734922644187,1.81515172161008,2.44615848229357,3.04361001780095,3.32170343081158,1.81168850196412,3.2673577144035,2.18852119245266,1.9496408711912,0,0.432276099749388,0.597423819763102,0.379335801906163,2.05647322697512,1.1270773567308,0.407302655690628,0.775809948670503,0.631222379012867,0,0,0.156998727841375,0,0.296452627087149,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,1.32643988239339,0.977789858652155,0.509235257325564,0.704070744865506,0.335012514883631,0,0.975668239288994,0.315270288212382,0,0.159454768657487,0.163863314715738,0.172684981865896,0,0,0.54390568381871,0.491764273019036,0.551873492609465,195.068966835167,179.685515545847,0,0.504941854408746,11.9893123378178,14.055794794679,29.9438522848591,5.01834475700359,4.23317480756549,8.77537245445381,14.9779959619711,18.1198631905013,18.1832377855401,101.537535989291,0.141940085208269,1.06839362200353,0.162886959353576,0.164970122972535,0,0.728341908464944,0.302323556964751,0.565815239267694,0.885905678642318,0.922305443831782,1.03371317267288,0,1.42598951353889,0.632073515871632,0,0,8.5109901438447,3.96134406868882,4.39819524861365,4.28674070063185,2.83744373827638,8.74007206250146,11.6829804627506,10.656273219011,0,1.27099242518292,1.54369878638473,0,0.322928853391811,0.361877549568935,0.358117032009409,0,1.45740418314925,198.405073151245,0.170870880797853,0,0,0,0.136694227721025,0.228778173206523,0.509935289981566,0.139951452323658,0.414599921413271,0.954670618015114,2.68885594543965,2.23651413839534,2.59212817972323,2.29997125615916,2.40198820120795,2.83215127408124,2.31429676030941,0.785267825952089,0.90730481304255,2.4853572523477,0,0.299033092087958,0,1.94451188344048,0.774958940866387,1.85851738039856,0.469428954583016,0.5208175393758,2.72634295506848,1.20792060413003,0.864090018773596,0,0.810900861160657,0.513554785824136,0,0.537080087002444,0,0,0.147689527174577,0.302899349844443,0,0,0.0974578807397524,0.192423683280659,0.116876902181569,0.906921534460845,0.221985953374065,0.448569283047378,0.335769232728157,1.9318959403219,0.375364950902364,0.73260649706906,0.643105137237198,0,175.073071211291,230.162618253588,246.91796629238,219.628367035233,413.789841941468,410.178886282607,349.661655120075,358.455677766479,366.139066459237,325.671236091895,5.29315472679301,13.9658705690361,10.4147499510022,6.07766792670735,7.1268475293514,8.45680138870065,8.66762238426299,7.2112270033613,6.73930340142812,8.84440241173291,9.37873409593887,8.11093267960128,8.98958471710871,10.6922004516132,8.32814299856392,8.57328644309533,11.1248952907061,11.5745532278223,14.835092428919,9.42073088860143,7.54312355247914,5.85670160325814,10.0143199777875,5.52316383202848,10.540250606517,6.76916863133412,8.96347067076586,7.62902163169744,8.41985505844343,7.85599180320834,11.6262317761691,8.86540341380071,10.6400071224119,8.98633678878603,9.64533054905707,18.2361721894701,6.55008503647143,5.80151845930405,6.12122662620299,4.63241980150983,2.31867835620421 | |||
|short_description=p1@Kif5a | |||
}} |
Revision as of 16:01, 12 September 2013
Short description: | p1@Kif5a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kif5a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -22bp_to_ENSMUST00000169813_5end |
EntrezGene: | Kif5a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.39e-19 | 33 |
neuronal stem cell | 5.39e-19 | 33 |
neuroblast | 5.39e-19 | 33 |
electrically signaling cell | 5.39e-19 | 33 |
CNS neuron (sensu Vertebrata) | 9.76e-16 | 23 |
neuroblast (sensu Vertebrata) | 9.76e-16 | 23 |
electrically responsive cell | 9.29e-14 | 39 |
electrically active cell | 9.29e-14 | 39 |
ectodermal cell | 2.63e-13 | 44 |
neurectodermal cell | 2.63e-13 | 44 |
neural cell | 3.63e-13 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.79e-34 | 75 |
central nervous system | 1.03e-33 | 73 |
neurectoderm | 2.86e-32 | 64 |
neural plate | 2.86e-32 | 64 |
presumptive neural plate | 2.86e-32 | 64 |
ectoderm-derived structure | 1.82e-31 | 95 |
ectoderm | 1.82e-31 | 95 |
presumptive ectoderm | 1.82e-31 | 95 |
regional part of nervous system | 1.41e-28 | 54 |
neural tube | 9.32e-27 | 52 |
neural rod | 9.32e-27 | 52 |
future spinal cord | 9.32e-27 | 52 |
neural keel | 9.32e-27 | 52 |
ecto-epithelium | 1.33e-26 | 73 |
pre-chordal neural plate | 5.09e-25 | 49 |
brain | 4.26e-23 | 47 |
future brain | 4.26e-23 | 47 |
regional part of brain | 2.11e-22 | 46 |
anterior neural tube | 1.64e-21 | 40 |
gray matter | 6.57e-21 | 34 |
regional part of forebrain | 1.04e-20 | 39 |
forebrain | 1.04e-20 | 39 |
future forebrain | 1.04e-20 | 39 |
structure with developmental contribution from neural crest | 1.69e-20 | 92 |
brain grey matter | 1.74e-17 | 29 |
regional part of telencephalon | 1.74e-17 | 29 |
telencephalon | 1.74e-17 | 29 |
cerebral cortex | 4.13e-12 | 21 |
cerebral hemisphere | 4.13e-12 | 21 |
pallium | 4.13e-12 | 21 |
regional part of cerebral cortex | 1.02e-09 | 17 |
occipital lobe | 2.76e-09 | 10 |
visual cortex | 2.76e-09 | 10 |
neocortex | 2.76e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.