FFCP PHASE1:Hg19::chr2:128398024..128398039,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55679|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16084|TSSclassifier=S|UniProt=|association_with_transcript=-46bp_to_ENST00000494613_5end|description=CAGE_peak_24_at_LIMS2_5end|id=chr2:128398024..128398039,-|ontology_enrichment_celltype=CL:0000838!4.57e-15!52;CL:0000542!1.22e-14!53;CL:0000051!1.22e-14!53;CL:0000791!7.03e-12!18;CL:0000789!7.03e-12!18;CL:0002420!7.03e-12!18;CL:0002419!7.03e-12!18;CL:0000790!7.03e-12!18;CL:0000624!2.75e-11!6;CL:0000084!6.47e-11!25;CL:0000827!6.47e-11!25;CL:0000236!1.61e-09!14;CL:0000071!8.32e-08!18;CL:0002546!8.32e-08!18;CL:0000898!8.13e-07!3|ontology_enrichment_celltype_v019=CL:0000624;1.34e-11;6!CL:0000898;9.33e-11;3!CL:0000236;2.28e-09;13!CL:0000895;1.09e-08;1|ontology_enrichment_celltype_v019_2=CL:0000624,1.23e-11,6;CL:0000898,5.15e-11,3;CL:0000810,6.16e-09,1;CL:0000895,6.16e-09,1;CL:0002436,6.16e-09,1;CL:0002427,6.16e-09,1;CL:0002428,6.16e-09,1;CL:0002429,6.16e-09,1;CL:0002433,6.16e-09,1;CL:0002431,6.16e-09,1;CL:0002432,6.16e-09,1;CL:0000236,1.12e-08,14;CL:0000838,5.29e-08,52;CL:0000542,7.86e-08,53;CL:0000051,7.86e-08,53|ontology_enrichment_development_v019=CL:0002427;1.09e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001986!8.32e-08!18;UBERON:0004638!8.32e-08!18;UBERON:0004852!8.32e-08!18|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,1.09227722252426,0,0.853460445133014,0.800791974072025,0,0,0,0.569212969109448,1.17447437874188,1.91136614062614,0,0,0,0.196709770113833,0.786021525498329,1.02800749499755,6.18590032945509,0.651844533267181,2.36723902867367,0,1.78256731016278,1.76763544484902,1.55073726208535,0.812411591295047,1.92136979588513,1.04047478047903,1.31550323682941,1.93445012450094,3.18783394308558,0.889719378972363,0.802622484269139,2.09071047609954,5.21222976408804,1.91610246800961,1.37450978193052,0.506039384039006,0.318565414324097,0,0.950452044448374,0,0.127986611154418,0,0.236777252044017,0,0.201606743224732,0,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0.550236083880135,0.208994966536811,0,0,0,0.402829317109147,0,0,0,1.62028389576352,0.17859945656816,0.22452937262617,0.337834441449967,0,0,0.549605231791222,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,1.32438929824395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0.197030760201927,0,0.513372145118994,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.783204629850962,0,0.413536052245775,0,0.213455115606889,0,0,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0.145016693914229,0.170453254832202,0.356128142586949,0,0,0,0,0,0,0,0,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0.507447609232169,0,0,0,0.822724546172388,0,0,0,0.106824071127473,0,0,0,0.28853842595289,1.42283686696828,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0.247247575143499,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0.129282956361551,0,0,0,0.213574825135389,0.314408610199332,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487671699929078,0,0.102662806856247,0,0,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03382309777839,0.644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0.186224142887574,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0|short_description=p24@LIMS2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=55679 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-46bp_to_ENST00000494613_5end | |||
|description=CAGE_peak_24_at_LIMS2_5end | |||
|id=chr2:128398024..128398039,- | |||
|ontology_enrichment_celltype=CL:0000838!4.57e-15!52;CL:0000542!1.22e-14!53;CL:0000051!1.22e-14!53;CL:0000791!7.03e-12!18;CL:0000789!7.03e-12!18;CL:0002420!7.03e-12!18;CL:0002419!7.03e-12!18;CL:0000790!7.03e-12!18;CL:0000624!2.75e-11!6;CL:0000084!6.47e-11!25;CL:0000827!6.47e-11!25;CL:0000236!1.61e-09!14;CL:0000071!8.32e-08!18;CL:0002546!8.32e-08!18;CL:0000898!8.13e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000624;1.34e-11;6!CL:0000898;9.33e-11;3!CL:0000236;2.28e-09;13!CL:0000895;1.09e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,1.23e-11,6;CL:0000898,5.15e-11,3;CL:0000810,6.16e-09,1;CL:0000895,6.16e-09,1;CL:0002436,6.16e-09,1;CL:0002427,6.16e-09,1;CL:0002428,6.16e-09,1;CL:0002429,6.16e-09,1;CL:0002433,6.16e-09,1;CL:0002431,6.16e-09,1;CL:0002432,6.16e-09,1;CL:0000236,1.12e-08,14;CL:0000838,5.29e-08,52;CL:0000542,7.86e-08,53;CL:0000051,7.86e-08,53 | |||
|ontology_enrichment_development_v019=CL:0002427;1.09e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!8.32e-08!18;UBERON:0004638!8.32e-08!18;UBERON:0004852!8.32e-08!18 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,1.09227722252426,0,0.853460445133014,0.800791974072025,0,0,0,0.569212969109448,1.17447437874188,1.91136614062614,0,0,0,0.196709770113833,0.786021525498329,1.02800749499755,6.18590032945509,0.651844533267181,2.36723902867367,0,1.78256731016278,1.76763544484902,1.55073726208535,0.812411591295047,1.92136979588513,1.04047478047903,1.31550323682941,1.93445012450094,3.18783394308558,0.889719378972363,0.802622484269139,2.09071047609954,5.21222976408804,1.91610246800961,1.37450978193052,0.506039384039006,0.318565414324097,0,0.950452044448374,0,0.127986611154418,0,0.236777252044017,0,0.201606743224732,0,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0.550236083880135,0.208994966536811,0,0,0,0.402829317109147,0,0,0,1.62028389576352,0.17859945656816,0.22452937262617,0.337834441449967,0,0,0.549605231791222,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,1.32438929824395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0.197030760201927,0,0.513372145118994,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.783204629850962,0,0.413536052245775,0,0.213455115606889,0,0,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0.145016693914229,0.170453254832202,0.356128142586949,0,0,0,0,0,0,0,0,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0.507447609232169,0,0,0,0.822724546172388,0,0,0,0.106824071127473,0,0,0,0.28853842595289,1.42283686696828,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0.247247575143499,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0.129282956361551,0,0,0,0.213574825135389,0.314408610199332,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487671699929078,0,0.102662806856247,0,0,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03382309777839,0.644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0.186224142887574,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p24@LIMS2 | |||
}} |
Revision as of 13:24, 12 September 2013
Short description: | p24@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_24_at_LIMS2_5end |
Coexpression cluster: | NA |
Association with transcript: | -46bp_to_ENST00000494613_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 1.23e-11 | 6 |
naive T cell | 5.15e-11 | 3 |
CD4-positive, alpha-beta thymocyte | 6.16e-09 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 6.16e-09 | 1 |
mature CD4 single-positive thymocyte | 6.16e-09 | 1 |
resting double-positive thymocyte | 6.16e-09 | 1 |
double-positive blast | 6.16e-09 | 1 |
CD69-positive double-positive thymocyte | 6.16e-09 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 6.16e-09 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 6.16e-09 | 1 |
CD24-positive, CD4 single-positive thymocyte | 6.16e-09 | 1 |
B cell | 1.12e-08 | 14 |
lymphoid lineage restricted progenitor cell | 5.29e-08 | 52 |
lymphocyte | 7.86e-08 | 53 |
common lymphoid progenitor | 7.86e-08 | 53 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.