FFCP PHASE1:Hg19::chr2:109150887..109150933,+: Difference between revisions
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{{FFCP | 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18.977166805816,9.43595651135378,13.1051565830417,6.95903372811503,3.61377364172861,4.33775174906508,3.35186950783946,26.7123654548872,24.5260026953898,6.40456598628376,21.5132325651317,55.7366768782824,8.79940383821496,5.6678630530234,11.1743701340006,4.51256001329661,5.04143392443436,4.77185042003103,5.00574501458738,5.71077681036618,22.3776798182338,17.6954585021611,11.9228589039091,16.2891189271977,27.0781287781689,28.3047569684641,26.058025097232,22.7887294898249,13.7159446718394,8.59665412356402,10.2143610847755,15.8858759984794,54.1153275554386,7.83435981573378,3.12431239445539,9.71427943555565,6.72207588055412,3.82882366312754,14.2547019382867,26.7954036330219,4.39678110899052,17.2479277313454,4.82131652290458,9.75222794434589,7.28358725083958,15.4810290118882,20.2241403970817,16.8241621831438,51.1034268123507,9.71967181568693,4.99873079077653,9.45550727071746,16.6847102838104,18.9953284698244,9.58405098487612,23.5428617183583,14.6105395281519,40.3784595578822,18.1545641397079,15.4389335421578,13.273143385549,6.27703696987876,32.3376386482798,28.8616091302891,11.396889028967,12.6331673049523,12.4426739126537,18.0695490704517,21.1814281307712,18.917375856533,16.5120949574462,20.6196181689645,43.1186876073405,34.3994018031876,32.8854969485509,13.1521313044426,8.65617267374113,14.8908632553216,26.8976553963367,12.7579587447202,26.7141046182527,5.61454712309054,19.8950775161368,4.51896344954761,22.2503781616751,12.9729809759606,12.0770274853339,20.8370226891451,18.5775626428364,7.05475944542284,23.289090566621,5.18488403623577,8.2449556188277,11.5848096127564,11.8343603723352,27.0184112353629,15.1314107947564,19.5307400559939,20.8877015883101,19.819487185228,8.4694769211766,13.6410323371586,24.8314372003816,20.6428177532043,13.7605999825393,14.0416690351934,4.69141282317311,3.49080552272302,15.3417783749466,28.2716213806731,20.7979032884138,13.8440499879613,25.2332849670158,15.6249767908085,19.131473652727,12.8505925474897,9.08539177902906,18.1951901078993,10.2790091109874,13.5643869810649,7.23503151421682,7.46252495512901,12.3085265075655,16.8454845701775,18.0928967912443,8.52573609835281,12.3528681448757,18.5017573258012,11.4564884900697,13.7439688491589,16.764189588066,14.3737986455818,14.9521557692384,22.3056058771223,25.947507810589,37.9339231727141,38.2083898242221,25.0993966973022,28.6542394720012,28.1569130884145,30.193636713168,21.9723936290499,21.9699735481219,13.6866179641898,7.69364381527759|short_description=p1@LIMS1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3987 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |||
|TSSclassifier=S | |||
|UniProt=C9JF46 | |||
|association_with_transcript=0bp_to_ENST00000428064_5end | |||
|description=CAGE_peak_1_at_LIMS1_5end | |||
|id=chr2:109150887..109150933,+ | |||
|ontology_enrichment_celltype=CL:0000012!3.91e-22!682;CL:0000548!2.57e-21!679;CL:0000004!2.57e-21!679;CL:0000255!2.57e-21!679;CL:0002371!4.85e-20!591;CL:0000144!4.95e-20!625;CL:0000048!6.48e-17!430;CL:0000723!1.14e-15!436;CL:0000034!1.27e-14!444;CL:0002320!4.64e-14!365;CL:0000134!1.08e-13!358;CL:0002057!7.42e-13!42;CL:0000219!9.42e-13!390;CL:0000063!4.21e-11!578;CL:0000766!6.52e-11!76;CL:0000860!1.12e-10!45;CL:0000763!2.18e-10!112;CL:0000049!2.18e-10!112;CL:0000003!3.25e-10!722;CL:0000557!4.33e-10!71;CL:0002009!5.12e-09!65;CL:0000839!1.77e-08!70;CL:0002194!2.00e-08!63;CL:0000576!2.00e-08!63;CL:0000040!2.00e-08!63;CL:0000559!2.00e-08!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.44e-13;33!CL:0002057;8.44e-13;33!CL:0000473;7.53e-09;39!CL:0000234;7.53e-09;39!CL:0000576;2.22e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,5.11e-18,427;CL:0000723,1.01e-16,433;CL:0000034,1.23e-15,441;CL:0002320,7.87e-15,361;CL:0000134,1.85e-14,354;CL:0000219,1.85e-13,386;CL:0000860,7.42e-13,42;CL:0002057,7.42e-13,42;CL:0000766,3.07e-12,72;CL:0000557,2.11e-11,67;CL:0000763,2.32e-11,108;CL:0000049,2.32e-11,108;CL:0000473,8.39e-11,48;CL:0000234,8.39e-11,48;CL:0002009,2.66e-10,61;CL:0002194,1.14e-09,59;CL:0000576,1.14e-09,59;CL:0000040,1.14e-09,59;CL:0000559,1.14e-09,59;CL:0000839,1.23e-09,66 | |||
|ontology_enrichment_development_v019=CL:0002057;1.18e-09;42 | |||
|ontology_enrichment_disease=DOID:2394!6.80e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;6.58e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.80e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002384!5.99e-14!375;UBERON:0000926!2.15e-11!448;UBERON:0004120!2.15e-11!448;UBERON:0006603!2.15e-11!448;UBERON:0002204!6.77e-11!167;UBERON:0004765!1.80e-10!101;UBERON:0001434!1.80e-10!101;UBERON:0001474!2.71e-09!86;UBERON:0002405!4.54e-09!115;UBERON:0002371!9.09e-09!80 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.04e-14,371;UBERON:0002204,2.98e-12,167;UBERON:0001434,8.12e-12,100;UBERON:0004765,1.96e-11,90;UBERON:0001474,2.28e-10,82;UBERON:0000926,4.56e-10,315;UBERON:0004120,4.56e-10,315;UBERON:0006603,4.56e-10,315;UBERON:0002371,7.53e-10,76;UBERON:0002405,9.49e-09,93 | |||
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| |||
|short_description=p1@LIMS1 | |||
}} |
Revision as of 12:53, 12 September 2013
Short description: | p1@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LIMS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000428064_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | C9JF46 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 5.11e-18 | 427 |
somatic stem cell | 1.01e-16 | 433 |
stem cell | 1.23e-15 | 441 |
connective tissue cell | 7.87e-15 | 361 |
mesenchymal cell | 1.85e-14 | 354 |
motile cell | 1.85e-13 | 386 |
classical monocyte | 7.42e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.42e-13 | 42 |
myeloid leukocyte | 3.07e-12 | 72 |
granulocyte monocyte progenitor cell | 2.11e-11 | 67 |
myeloid cell | 2.32e-11 | 108 |
common myeloid progenitor | 2.32e-11 | 108 |
defensive cell | 8.39e-11 | 48 |
phagocyte | 8.39e-11 | 48 |
macrophage dendritic cell progenitor | 2.66e-10 | 61 |
monopoietic cell | 1.14e-09 | 59 |
monocyte | 1.14e-09 | 59 |
monoblast | 1.14e-09 | 59 |
promonocyte | 1.14e-09 | 59 |
myeloid lineage restricted progenitor cell | 1.23e-09 | 66 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.04e-14 | 371 |
musculoskeletal system | 2.98e-12 | 167 |
skeletal system | 8.12e-12 | 100 |
skeletal element | 1.96e-11 | 90 |
bone element | 2.28e-10 | 82 |
mesoderm | 4.56e-10 | 315 |
mesoderm-derived structure | 4.56e-10 | 315 |
presumptive mesoderm | 4.56e-10 | 315 |
bone marrow | 7.53e-10 | 76 |
immune system | 9.49e-09 | 93 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.80e-07 | 14 |
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