FFCP PHASE1:Hg19::chr2:104096987..104096993,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C545|description=CAGE_peak_at_chr2:104096987..104096993,-|id=chr2:104096987..104096993,-|ontology_enrichment_celltype=CL:0000128!7.22e-38!7;CL:0000126!7.22e-38!7;CL:0000127!7.22e-38!7;CL:0002453!7.22e-38!7;CL:0002605!5.37e-33!3;CL:0002319!8.01e-31!25;CL:0000047!1.00e-21!8;CL:0000243!1.34e-15!15;CL:0000125!1.34e-15!15;CL:0000030!1.34e-15!15;CL:0000339!1.34e-15!15;CL:0002603!7.02e-15!3;CL:0000095!5.96e-14!17;CL:0000123!5.96e-14!17;CL:0000133!5.06e-13!59;CL:0000221!1.09e-10!71;CL:0000540!4.99e-08!6;CL:0000031!4.99e-08!6;CL:0000404!4.99e-08!6|ontology_enrichment_celltype_v019=CL:0002605;1.11e-98;3!CL:0000047;3.96e-66;2!CL:0002319;4.38e-44;25!CL:0000128;6.02e-43;7!CL:0000126;6.02e-43;7!CL:0000127;6.02e-43;7!CL:0000243;3.02e-18;15!CL:0000125;3.02e-18;15!CL:0000095;2.05e-16;17!CL:0000540;8.48e-07;6!CL:0000404;8.48e-07;6|ontology_enrichment_celltype_v019_2=CL:0002605,1.55e-98,3;CL:0002319,4.38e-44,25;CL:0000128,6.96e-43,7;CL:0000126,6.96e-43,7;CL:0000127,6.96e-43,7;CL:0002453,6.96e-43,7;CL:0000047,1.34e-37,8;CL:0000133,7.27e-20,59;CL:0000243,3.21e-18,15;CL:0000125,3.21e-18,15;CL:0000030,3.21e-18,15;CL:0000339,3.21e-18,15;CL:0000221,1.82e-16,72;CL:0000095,2.16e-16,17;CL:0000123,2.16e-16,17;CL:0000333,1.16e-07,41;CL:0000540,9.49e-07,6;CL:0000031,9.49e-07,6;CL:0000404,9.49e-07,6|ontology_enrichment_development_v019=CL:0000339;3.02e-18;15!CL:0000133;2.21e-15;59!CL:0000221;1.95e-08;72!CL:0000031;8.48e-07;6|ontology_enrichment_disease=DOID:1036!2.12e-12!8|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003076!1.98e-24!15;UBERON:0003057!1.98e-24!15;UBERON:0001017!1.71e-22!82;UBERON:0004733!1.73e-21!12;UBERON:0002028!1.73e-21!12;UBERON:0007277!1.73e-21!12;UBERON:0005743!2.22e-21!86;UBERON:0004732!7.76e-20!13;UBERON:0000073!3.29e-19!94;UBERON:0001016!3.29e-19!94;UBERON:0001049!1.21e-16!57;UBERON:0005068!1.21e-16!57;UBERON:0006241!1.21e-16!57;UBERON:0007135!1.21e-16!57;UBERON:0001896!9.30e-15!3;UBERON:0005290!9.30e-15!3;UBERON:0010096!9.30e-15!3;UBERON:0002616!5.55e-13!59;UBERON:0002298!3.25e-12!8;UBERON:0002581!1.81e-11!1;UBERON:0002680!5.57e-11!9;UBERON:0001895!5.57e-11!9;UBERON:0010092!5.57e-11!9;UBERON:0000955!8.59e-11!69;UBERON:0006238!8.59e-11!69;UBERON:0003075!1.22e-10!86;UBERON:0007284!1.22e-10!86;UBERON:0002346!4.11e-10!90;UBERON:0004121!6.41e-10!169;UBERON:0000924!1.21e-09!173;UBERON:0006601!1.21e-09!173;UBERON:0002037!6.84e-08!6;UBERON:0006215!6.84e-08!6;UBERON:0002020!1.87e-07!34;UBERON:0003528!1.87e-07!34;UBERON:0000956!9.21e-07!25;UBERON:0000203!9.21e-07!25|ontology_enrichment_uberon_v019=UBERON:0000956;3.25e-12;25!UBERON:0000203;3.25e-12;25!UBERON:0002791;3.73e-10;32!UBERON:0001869;3.73e-10;32!UBERON:0003528;1.27e-09;34!UBERON:0002020;1.27e-09;34!UBERON:0001893;1.27e-09;34|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.81e-15,81;UBERON:0001016,2.44e-13,89;UBERON:0000956,3.38e-12,25;UBERON:0000203,3.38e-12,25;UBERON:0002791,9.04e-10,32;UBERON:0001869,9.04e-10,32;UBERON:0003528,2.97e-09,34;UBERON:0002020,2.97e-09,34;UBERON:0001893,2.97e-09,34;UBERON:0002780,7.94e-08,41;UBERON:0001890,7.94e-08,41;UBERON:0003080,7.94e-08,41;UBERON:0006240,7.94e-08,41;UBERON:0004121,3.21e-07,171;UBERON:0000924,3.21e-07,171;UBERON:0006601,3.21e-07,171|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.940364164434263,13.4530913951597,1.09499540058307,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,1.30139853857622,0,1.00509759200609,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902382642468723,0.392125068635479,0.335643173951685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C545 | |||
|description=CAGE_peak_at_chr2:104096987..104096993,- | |||
|id=chr2:104096987..104096993,- | |||
|ontology_enrichment_celltype=CL:0000128!7.22e-38!7;CL:0000126!7.22e-38!7;CL:0000127!7.22e-38!7;CL:0002453!7.22e-38!7;CL:0002605!5.37e-33!3;CL:0002319!8.01e-31!25;CL:0000047!1.00e-21!8;CL:0000243!1.34e-15!15;CL:0000125!1.34e-15!15;CL:0000030!1.34e-15!15;CL:0000339!1.34e-15!15;CL:0002603!7.02e-15!3;CL:0000095!5.96e-14!17;CL:0000123!5.96e-14!17;CL:0000133!5.06e-13!59;CL:0000221!1.09e-10!71;CL:0000540!4.99e-08!6;CL:0000031!4.99e-08!6;CL:0000404!4.99e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0002605;1.11e-98;3!CL:0000047;3.96e-66;2!CL:0002319;4.38e-44;25!CL:0000128;6.02e-43;7!CL:0000126;6.02e-43;7!CL:0000127;6.02e-43;7!CL:0000243;3.02e-18;15!CL:0000125;3.02e-18;15!CL:0000095;2.05e-16;17!CL:0000540;8.48e-07;6!CL:0000404;8.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.55e-98,3;CL:0002319,4.38e-44,25;CL:0000128,6.96e-43,7;CL:0000126,6.96e-43,7;CL:0000127,6.96e-43,7;CL:0002453,6.96e-43,7;CL:0000047,1.34e-37,8;CL:0000133,7.27e-20,59;CL:0000243,3.21e-18,15;CL:0000125,3.21e-18,15;CL:0000030,3.21e-18,15;CL:0000339,3.21e-18,15;CL:0000221,1.82e-16,72;CL:0000095,2.16e-16,17;CL:0000123,2.16e-16,17;CL:0000333,1.16e-07,41;CL:0000540,9.49e-07,6;CL:0000031,9.49e-07,6;CL:0000404,9.49e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000339;3.02e-18;15!CL:0000133;2.21e-15;59!CL:0000221;1.95e-08;72!CL:0000031;8.48e-07;6 | |||
|ontology_enrichment_disease=DOID:1036!2.12e-12!8 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!1.98e-24!15;UBERON:0003057!1.98e-24!15;UBERON:0001017!1.71e-22!82;UBERON:0004733!1.73e-21!12;UBERON:0002028!1.73e-21!12;UBERON:0007277!1.73e-21!12;UBERON:0005743!2.22e-21!86;UBERON:0004732!7.76e-20!13;UBERON:0000073!3.29e-19!94;UBERON:0001016!3.29e-19!94;UBERON:0001049!1.21e-16!57;UBERON:0005068!1.21e-16!57;UBERON:0006241!1.21e-16!57;UBERON:0007135!1.21e-16!57;UBERON:0001896!9.30e-15!3;UBERON:0005290!9.30e-15!3;UBERON:0010096!9.30e-15!3;UBERON:0002616!5.55e-13!59;UBERON:0002298!3.25e-12!8;UBERON:0002581!1.81e-11!1;UBERON:0002680!5.57e-11!9;UBERON:0001895!5.57e-11!9;UBERON:0010092!5.57e-11!9;UBERON:0000955!8.59e-11!69;UBERON:0006238!8.59e-11!69;UBERON:0003075!1.22e-10!86;UBERON:0007284!1.22e-10!86;UBERON:0002346!4.11e-10!90;UBERON:0004121!6.41e-10!169;UBERON:0000924!1.21e-09!173;UBERON:0006601!1.21e-09!173;UBERON:0002037!6.84e-08!6;UBERON:0006215!6.84e-08!6;UBERON:0002020!1.87e-07!34;UBERON:0003528!1.87e-07!34;UBERON:0000956!9.21e-07!25;UBERON:0000203!9.21e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;3.25e-12;25!UBERON:0000203;3.25e-12;25!UBERON:0002791;3.73e-10;32!UBERON:0001869;3.73e-10;32!UBERON:0003528;1.27e-09;34!UBERON:0002020;1.27e-09;34!UBERON:0001893;1.27e-09;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.81e-15,81;UBERON:0001016,2.44e-13,89;UBERON:0000956,3.38e-12,25;UBERON:0000203,3.38e-12,25;UBERON:0002791,9.04e-10,32;UBERON:0001869,9.04e-10,32;UBERON:0003528,2.97e-09,34;UBERON:0002020,2.97e-09,34;UBERON:0001893,2.97e-09,34;UBERON:0002780,7.94e-08,41;UBERON:0001890,7.94e-08,41;UBERON:0003080,7.94e-08,41;UBERON:0006240,7.94e-08,41;UBERON:0004121,3.21e-07,171;UBERON:0000924,3.21e-07,171;UBERON:0006601,3.21e-07,171 | |||
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|short_description=p@chr2:104096987..104096993,- | |||
}} |
Revision as of 12:47, 12 September 2013
Short description: | p@chr2:104096987..104096993, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:104096987..104096993, - |
Coexpression cluster: | C545_Astrocyte_Neural_Neurons_parietal_neuroectodermal_occipital_temporal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.55e-98 | 3 |
neural cell | 4.38e-44 | 25 |
oligodendrocyte | 6.96e-43 | 7 |
macroglial cell | 6.96e-43 | 7 |
astrocyte | 6.96e-43 | 7 |
oligodendrocyte precursor cell | 6.96e-43 | 7 |
neuronal stem cell | 1.34e-37 | 8 |
neurectodermal cell | 7.27e-20 | 59 |
glial cell (sensu Vertebrata) | 3.21e-18 | 15 |
glial cell | 3.21e-18 | 15 |
glioblast | 3.21e-18 | 15 |
glioblast (sensu Vertebrata) | 3.21e-18 | 15 |
ectodermal cell | 1.82e-16 | 72 |
neuron associated cell | 2.16e-16 | 17 |
neuron associated cell (sensu Vertebrata) | 2.16e-16 | 17 |
migratory neural crest cell | 1.16e-07 | 41 |
neuron | 9.49e-07 | 6 |
neuroblast | 9.49e-07 | 6 |
electrically signaling cell | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.81e-15 | 81 |
nervous system | 2.44e-13 | 89 |
cerebral cortex | 3.38e-12 | 25 |
pallium | 3.38e-12 | 25 |
regional part of telencephalon | 9.04e-10 | 32 |
cerebral hemisphere | 9.04e-10 | 32 |
brain grey matter | 2.97e-09 | 34 |
gray matter | 2.97e-09 | 34 |
telencephalon | 2.97e-09 | 34 |
regional part of forebrain | 7.94e-08 | 41 |
forebrain | 7.94e-08 | 41 |
anterior neural tube | 7.94e-08 | 41 |
future forebrain | 7.94e-08 | 41 |
ectoderm-derived structure | 3.21e-07 | 171 |
ectoderm | 3.21e-07 | 171 |
presumptive ectoderm | 3.21e-07 | 171 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.