FFCP PHASE1:Hg19::chr20:46369826..46369840,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C4047|description=CAGE_peak_at_chr20:46369826..46369840,+|id=chr20:46369826..46369840,+|ontology_enrichment_celltype=CL:0002057!1.46e-88!42;CL:0000860!5.71e-82!45;CL:0000766!3.07e-75!76;CL:0002194!5.61e-61!63;CL:0000576!5.61e-61!63;CL:0000040!5.61e-61!63;CL:0000559!5.61e-61!63;CL:0002009!8.32e-59!65;CL:0000839!6.47e-54!70;CL:0000557!5.10e-53!71;CL:0000763!1.46e-49!112;CL:0000049!1.46e-49!112;CL:0000738!1.93e-47!140;CL:0002087!6.23e-39!119;CL:0000037!7.65e-38!172;CL:0000566!7.65e-38!172;CL:0000988!4.74e-35!182;CL:0002032!1.49e-34!165;CL:0000837!1.49e-34!165;CL:0002031!4.34e-31!124;CL:0002393!7.53e-25!9;CL:0002397!7.53e-25!9;CL:0000094!2.92e-24!8;CL:0000081!3.20e-17!11;CL:0000134!1.78e-11!358;CL:0002320!5.16e-11!365;CL:0000775!9.87e-11!3;CL:0000842!5.70e-10!3;CL:0000875!1.35e-09!3;CL:0002396!1.35e-09!3;CL:0000219!2.16e-09!390;CL:0000767!2.22e-09!3;CL:0000771!1.34e-07!2;CL:0000224!1.45e-07!4;CL:0000048!1.79e-07!430;CL:0000723!3.32e-07!436;CL:0000034!7.39e-07!444|ontology_enrichment_celltype_v019=CL:0000094;8.42e-29;8!CL:0000775;1.23e-28;3!CL:0000081;6.10e-21;11!CL:0000860;2.22e-19;33!CL:0002057;2.22e-19;33!CL:0000771;2.99e-19;2!CL:0000473;1.44e-15;39!CL:0000234;1.44e-15;39!CL:0000576;6.90e-14;48!CL:0000226;7.40e-13;3!CL:0000842;7.40e-13;3!CL:0000766;2.95e-12;69|ontology_enrichment_celltype_v019_2=CL:0000766,2.24e-29,72;CL:0000094,6.71e-29,8;CL:0000775,1.18e-28,3;CL:0000860,2.21e-24,42;CL:0002057,2.21e-24,42;CL:0000473,3.98e-21,48;CL:0000234,3.98e-21,48;CL:0000081,5.18e-21,11;CL:0000771,2.17e-19,2;CL:0000763,8.03e-19,108;CL:0000049,8.03e-19,108;CL:0000738,1.21e-18,136;CL:0002194,1.45e-16,59;CL:0000576,1.45e-16,59;CL:0000040,1.45e-16,59;CL:0000559,1.45e-16,59;CL:0002009,5.65e-16,61;CL:0000839,1.18e-14,66;CL:0000037,1.45e-14,168;CL:0000557,2.05e-14,67;CL:0000988,1.11e-13,177;CL:0000226,1.13e-12,3;CL:0000842,1.13e-12,3;CL:0002032,8.57e-12,161;CL:0000837,8.57e-12,161;CL:0002087,5.27e-11,115;CL:0002031,2.42e-07,120|ontology_enrichment_development_v019=CL:0002057;3.82e-15;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!4.34e-53!102;UBERON:0003061!4.34e-53!102;UBERON:0002193!1.69e-49!112;UBERON:0002371!6.00e-46!80;UBERON:0001474!4.74e-42!86;UBERON:0004765!2.55e-34!101;UBERON:0001434!2.55e-34!101;UBERON:0002405!1.34e-30!115;UBERON:0003081!7.09e-19!216;UBERON:0002204!8.00e-17!167;UBERON:0000178!3.81e-12!15;UBERON:0000179!3.81e-12!15;UBERON:0000463!3.81e-12!15;UBERON:0002384!2.20e-10!375|ontology_enrichment_uberon_v019=UBERON:0000178;3.13e-21;15!UBERON:0000179;3.13e-21;15!UBERON:0000463;3.13e-21;15!UBERON:0002390;4.06e-10;32!UBERON:0002193;6.53e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.39e-23,98;UBERON:0003061,1.39e-23,98;UBERON:0002193,3.59e-21,108;UBERON:0000178,4.64e-21,15;UBERON:0000179,4.64e-21,15;UBERON:0000463,4.64e-21,15;UBERON:0002371,1.58e-12,76;UBERON:0001474,1.69e-11,82;UBERON:0004765,2.46e-10,90;UBERON:0003081,5.20e-10,203;UBERON:0002405,5.98e-10,93;UBERON:0001434,3.86e-09,100|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.464448369948228,0,0,0,0,0,0,1.10799081706375,0.200544447470142,0.217010870715852,0,0,0,0.436194716338694,0.377875943688809,1.4555043671269,0.464858073811369,0.411167888021826,1.85823822537062,0.28769239232215,0.256160706529101,0.236482229888585,2.75796544589295,0.645484683583826,0,0.564727018627814,0.818718450173537,0.449446968890169,0.918251677112708,0.320929027076094,3.83602275479425,0,0,0,0.290209238628584,0,1.24564449799115,0.75374599577023,1.0429658368404,0.217188844705117,0.605399502633369,0.368277635987565,0.316462387440884,0.211255286311942,0.637812899895131,0.628975936525128,4.6054738770063,1.65194582125657,3.37523732063868,1.14005097496499,0.79566670879636,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473554504088034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,3.74503511973591,2.99161459204025,4.14415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.07857100409308,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4047 | |||
|description=CAGE_peak_at_chr20:46369826..46369840,+ | |||
|id=chr20:46369826..46369840,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.46e-88!42;CL:0000860!5.71e-82!45;CL:0000766!3.07e-75!76;CL:0002194!5.61e-61!63;CL:0000576!5.61e-61!63;CL:0000040!5.61e-61!63;CL:0000559!5.61e-61!63;CL:0002009!8.32e-59!65;CL:0000839!6.47e-54!70;CL:0000557!5.10e-53!71;CL:0000763!1.46e-49!112;CL:0000049!1.46e-49!112;CL:0000738!1.93e-47!140;CL:0002087!6.23e-39!119;CL:0000037!7.65e-38!172;CL:0000566!7.65e-38!172;CL:0000988!4.74e-35!182;CL:0002032!1.49e-34!165;CL:0000837!1.49e-34!165;CL:0002031!4.34e-31!124;CL:0002393!7.53e-25!9;CL:0002397!7.53e-25!9;CL:0000094!2.92e-24!8;CL:0000081!3.20e-17!11;CL:0000134!1.78e-11!358;CL:0002320!5.16e-11!365;CL:0000775!9.87e-11!3;CL:0000842!5.70e-10!3;CL:0000875!1.35e-09!3;CL:0002396!1.35e-09!3;CL:0000219!2.16e-09!390;CL:0000767!2.22e-09!3;CL:0000771!1.34e-07!2;CL:0000224!1.45e-07!4;CL:0000048!1.79e-07!430;CL:0000723!3.32e-07!436;CL:0000034!7.39e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000094;8.42e-29;8!CL:0000775;1.23e-28;3!CL:0000081;6.10e-21;11!CL:0000860;2.22e-19;33!CL:0002057;2.22e-19;33!CL:0000771;2.99e-19;2!CL:0000473;1.44e-15;39!CL:0000234;1.44e-15;39!CL:0000576;6.90e-14;48!CL:0000226;7.40e-13;3!CL:0000842;7.40e-13;3!CL:0000766;2.95e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.24e-29,72;CL:0000094,6.71e-29,8;CL:0000775,1.18e-28,3;CL:0000860,2.21e-24,42;CL:0002057,2.21e-24,42;CL:0000473,3.98e-21,48;CL:0000234,3.98e-21,48;CL:0000081,5.18e-21,11;CL:0000771,2.17e-19,2;CL:0000763,8.03e-19,108;CL:0000049,8.03e-19,108;CL:0000738,1.21e-18,136;CL:0002194,1.45e-16,59;CL:0000576,1.45e-16,59;CL:0000040,1.45e-16,59;CL:0000559,1.45e-16,59;CL:0002009,5.65e-16,61;CL:0000839,1.18e-14,66;CL:0000037,1.45e-14,168;CL:0000557,2.05e-14,67;CL:0000988,1.11e-13,177;CL:0000226,1.13e-12,3;CL:0000842,1.13e-12,3;CL:0002032,8.57e-12,161;CL:0000837,8.57e-12,161;CL:0002087,5.27e-11,115;CL:0002031,2.42e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;3.82e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.34e-53!102;UBERON:0003061!4.34e-53!102;UBERON:0002193!1.69e-49!112;UBERON:0002371!6.00e-46!80;UBERON:0001474!4.74e-42!86;UBERON:0004765!2.55e-34!101;UBERON:0001434!2.55e-34!101;UBERON:0002405!1.34e-30!115;UBERON:0003081!7.09e-19!216;UBERON:0002204!8.00e-17!167;UBERON:0000178!3.81e-12!15;UBERON:0000179!3.81e-12!15;UBERON:0000463!3.81e-12!15;UBERON:0002384!2.20e-10!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.13e-21;15!UBERON:0000179;3.13e-21;15!UBERON:0000463;3.13e-21;15!UBERON:0002390;4.06e-10;32!UBERON:0002193;6.53e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.39e-23,98;UBERON:0003061,1.39e-23,98;UBERON:0002193,3.59e-21,108;UBERON:0000178,4.64e-21,15;UBERON:0000179,4.64e-21,15;UBERON:0000463,4.64e-21,15;UBERON:0002371,1.58e-12,76;UBERON:0001474,1.69e-11,82;UBERON:0004765,2.46e-10,90;UBERON:0003081,5.20e-10,203;UBERON:0002405,5.98e-10,93;UBERON:0001434,3.86e-09,100 | |||
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|short_description=p@chr20:46369826..46369840,+ | |||
}} |
Revision as of 08:53, 12 September 2013
Short description: | p@chr20:46369826..46369840, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr20:46369826..46369840, + |
Coexpression cluster: | C4047_Neutrophils_CD14_Eosinophils_Peripheral_Basophils_Whole_CD14CD16 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.24e-29 | 72 |
granulocyte | 6.71e-29 | 8 |
neutrophil | 1.18e-28 | 3 |
classical monocyte | 2.21e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.21e-24 | 42 |
defensive cell | 3.98e-21 | 48 |
phagocyte | 3.98e-21 | 48 |
blood cell | 5.18e-21 | 11 |
eosinophil | 2.17e-19 | 2 |
myeloid cell | 8.03e-19 | 108 |
common myeloid progenitor | 8.03e-19 | 108 |
leukocyte | 1.21e-18 | 136 |
monopoietic cell | 1.45e-16 | 59 |
monocyte | 1.45e-16 | 59 |
monoblast | 1.45e-16 | 59 |
promonocyte | 1.45e-16 | 59 |
macrophage dendritic cell progenitor | 5.65e-16 | 61 |
myeloid lineage restricted progenitor cell | 1.18e-14 | 66 |
hematopoietic stem cell | 1.45e-14 | 168 |
granulocyte monocyte progenitor cell | 2.05e-14 | 67 |
hematopoietic cell | 1.11e-13 | 177 |
single nucleate cell | 1.13e-12 | 3 |
mononuclear cell | 1.13e-12 | 3 |
hematopoietic oligopotent progenitor cell | 8.57e-12 | 161 |
hematopoietic multipotent progenitor cell | 8.57e-12 | 161 |
nongranular leukocyte | 5.27e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 2.42e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.39e-23 | 98 |
blood island | 1.39e-23 | 98 |
hemolymphoid system | 3.59e-21 | 108 |
blood | 4.64e-21 | 15 |
haemolymphatic fluid | 4.64e-21 | 15 |
organism substance | 4.64e-21 | 15 |
bone marrow | 1.58e-12 | 76 |
bone element | 1.69e-11 | 82 |
skeletal element | 2.46e-10 | 90 |
lateral plate mesoderm | 5.20e-10 | 203 |
immune system | 5.98e-10 | 93 |
skeletal system | 3.86e-09 | 100 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.