FFCP PHASE1:Hg19::chr20:35177479..35177514,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C384|description=CAGE_peak_at_chr20:35177479..35177514,+|id=chr20:35177479..35177514,+|ontology_enrichment_celltype=CL:0000055!1.49e-19!180;CL:0000680!9.73e-13!57;CL:0000056!9.73e-13!57;CL:0000355!9.73e-13!57;CL:0000192!1.21e-12!42;CL:0000514!1.21e-12!42;CL:0000183!4.82e-12!59;CL:0000187!5.28e-12!54;CL:0000057!1.58e-11!75;CL:0000393!7.14e-11!60;CL:0000211!7.14e-11!60;CL:0000359!1.56e-09!32;CL:0000136!1.48e-08!15;CL:0000222!3.65e-07!119;CL:0002334!9.36e-07!12|ontology_enrichment_celltype_v019=CL:0002334;2.10e-09;12!CL:0000192;6.32e-09;43!CL:0000136;9.70e-09;13!CL:0000359;1.90e-08;32!CL:0000134;3.61e-07;55|ontology_enrichment_celltype_v019_2=CL:0000192,4.59e-12,43;CL:0000514,4.59e-12,43;CL:0000136,4.31e-10,15;CL:0000057,4.54e-10,76;CL:0002334,2.60e-09,12;CL:0000680,4.16e-09,58;CL:0000056,4.16e-09,58;CL:0000355,4.16e-09,58;CL:0000359,4.99e-09,32;CL:0000187,1.03e-08,55;CL:0000393,5.10e-07,61;CL:0000211,5.10e-07,61|ontology_enrichment_development_v019=CL:0000514;6.32e-09;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002385!3.73e-13!63;UBERON:0001015!3.73e-13!63;UBERON:0000383!3.73e-13!63;UBERON:0000914!5.10e-13!83;UBERON:0002329!5.10e-13!83;UBERON:0003077!5.10e-13!83;UBERON:0003059!5.10e-13!83;UBERON:0007282!5.10e-13!83;UBERON:0009618!5.10e-13!83;UBERON:0007285!5.10e-13!83;UBERON:0004290!1.24e-12!70;UBERON:0001134!3.10e-12!61;UBERON:0002036!3.10e-12!61;UBERON:0003082!3.10e-12!61;UBERON:0005256!3.79e-12!143;UBERON:0000486!7.30e-10!82;UBERON:0002100!1.09e-09!216;UBERON:0000481!1.38e-07!347;UBERON:0003104!2.62e-07!238;UBERON:0009142!2.62e-07!238;UBERON:0000468!2.96e-07!659;UBERON:0004872!3.69e-07!84;UBERON:0001135!3.81e-07!15;UBERON:0001009!8.43e-07!113|ontology_enrichment_uberon_v019=UBERON:0003688;1.03e-07;6!UBERON:0002358;1.03e-07;6!UBERON:0003684;1.03e-07;6!UBERON:0001178;1.03e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0002385,7.66e-10,64;UBERON:0001015,7.66e-10,64;UBERON:0000383,7.66e-10,64;UBERON:0005256,1.35e-09,122;UBERON:0007524,8.53e-09,73;UBERON:0001134,8.54e-09,62;UBERON:0002036,8.54e-09,62;UBERON:0003082,8.54e-09,62;UBERON:0003104,8.56e-09,160;UBERON:0009142,8.56e-09,160;UBERON:0007503,1.01e-08,78;UBERON:0002329,1.40e-08,71;UBERON:0003059,1.40e-08,71;UBERON:0007282,1.40e-08,71;UBERON:0004290,1.40e-08,71;UBERON:0009618,1.40e-08,71;UBERON:0003077,2.54e-08,72;UBERON:0007285,2.54e-08,72;UBERON:0003688,1.25e-07,6;UBERON:0002358,1.25e-07,6;UBERON:0003684,1.25e-07,6;UBERON:0001178,1.25e-07,6;UBERON:0002100,2.40e-07,199|phase1_expression=8.53888382571616,22.2664544846622,9.58489947852604,23.01685862122,15.1966772105278,11.3404008133048,15.1979926900986,0.631719873426831,1.82829939739887,1.47440361900905,8.37361401566913,0.436882744260345,0.527533956456907,0.247532705920093,1.32558950291166,4.70627602516243,1.20538905604795,4.38186054232424,5.36726078669558,0.123121058076788,0.408001382488506,0.313454721478088,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,1.15076305659177,3.2529523714611,1.00267582127178,0.869079113764942,0,0,0.189069634328136,1.33037638477538,1.75669571386252,0.785874452986276,0,0,1.29818957461873,0.174129737299267,0.26591592103773,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0,0,0,0,7.9515512271251,1.77282716330412,1.19168262731897,0.286836620748814,0.709336764396714,3.36406560085384,3.20246987189115,5.18001851676036,0.622422070799533,0.942974704487816,0.490385709340376,0.454072282934794,0,0.234321431833797,0.936480230490962,0,0.597794722207204,0.117434498643765,0.161872944368132,0,0.408308342509787,0.245668634623536,0.206651562351531,5.94001428641027,12.857880322485,0,0.718618141816238,0,0.250237039743928,0,1.31693286264251,14.0984386067549,5.70904623845068,0.113432183160021,1.79389635688862,1.70845911054854,3.39091041855299,1.20036438433761,1.44273540933814,2.31876486041066,4.09457083929498,0.675105328965065,2.82567314967476,1.26216887122057,2.48534726334208,1.77810662500693,1.06502877754984,4.43309232201617,1.86516651541536,0.193260853163297,0,0,0.609868530647977,0.662648841607426,0.348581828608555,0.414644220061482,0.504641701751257,0,4.69348596989448,9.00537313470039,1.38134921352481,0.928735856063958,2.16563844500876,0.354920400119532,0.674338760312407,0.482022059766964,1.43382164552112,0.653638332277218,0.237270619111097,0.808987848960987,0.196221465125346,0.38474715694639,0,0,1.2347220339942,2.94017422771084,0,0,0,0,0.245976877086227,0.343135620597051,0.109750285408626,0,0,0,0,0,1.44331342025273,0.115930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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C384 | |||
|description=CAGE_peak_at_chr20:35177479..35177514,+ | |||
|id=chr20:35177479..35177514,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.49e-19!180;CL:0000680!9.73e-13!57;CL:0000056!9.73e-13!57;CL:0000355!9.73e-13!57;CL:0000192!1.21e-12!42;CL:0000514!1.21e-12!42;CL:0000183!4.82e-12!59;CL:0000187!5.28e-12!54;CL:0000057!1.58e-11!75;CL:0000393!7.14e-11!60;CL:0000211!7.14e-11!60;CL:0000359!1.56e-09!32;CL:0000136!1.48e-08!15;CL:0000222!3.65e-07!119;CL:0002334!9.36e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.10e-09;12!CL:0000192;6.32e-09;43!CL:0000136;9.70e-09;13!CL:0000359;1.90e-08;32!CL:0000134;3.61e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,4.59e-12,43;CL:0000514,4.59e-12,43;CL:0000136,4.31e-10,15;CL:0000057,4.54e-10,76;CL:0002334,2.60e-09,12;CL:0000680,4.16e-09,58;CL:0000056,4.16e-09,58;CL:0000355,4.16e-09,58;CL:0000359,4.99e-09,32;CL:0000187,1.03e-08,55;CL:0000393,5.10e-07,61;CL:0000211,5.10e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;6.32e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!3.73e-13!63;UBERON:0001015!3.73e-13!63;UBERON:0000383!3.73e-13!63;UBERON:0000914!5.10e-13!83;UBERON:0002329!5.10e-13!83;UBERON:0003077!5.10e-13!83;UBERON:0003059!5.10e-13!83;UBERON:0007282!5.10e-13!83;UBERON:0009618!5.10e-13!83;UBERON:0007285!5.10e-13!83;UBERON:0004290!1.24e-12!70;UBERON:0001134!3.10e-12!61;UBERON:0002036!3.10e-12!61;UBERON:0003082!3.10e-12!61;UBERON:0005256!3.79e-12!143;UBERON:0000486!7.30e-10!82;UBERON:0002100!1.09e-09!216;UBERON:0000481!1.38e-07!347;UBERON:0003104!2.62e-07!238;UBERON:0009142!2.62e-07!238;UBERON:0000468!2.96e-07!659;UBERON:0004872!3.69e-07!84;UBERON:0001135!3.81e-07!15;UBERON:0001009!8.43e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.03e-07;6!UBERON:0002358;1.03e-07;6!UBERON:0003684;1.03e-07;6!UBERON:0001178;1.03e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002385,7.66e-10,64;UBERON:0001015,7.66e-10,64;UBERON:0000383,7.66e-10,64;UBERON:0005256,1.35e-09,122;UBERON:0007524,8.53e-09,73;UBERON:0001134,8.54e-09,62;UBERON:0002036,8.54e-09,62;UBERON:0003082,8.54e-09,62;UBERON:0003104,8.56e-09,160;UBERON:0009142,8.56e-09,160;UBERON:0007503,1.01e-08,78;UBERON:0002329,1.40e-08,71;UBERON:0003059,1.40e-08,71;UBERON:0007282,1.40e-08,71;UBERON:0004290,1.40e-08,71;UBERON:0009618,1.40e-08,71;UBERON:0003077,2.54e-08,72;UBERON:0007285,2.54e-08,72;UBERON:0003688,1.25e-07,6;UBERON:0002358,1.25e-07,6;UBERON:0003684,1.25e-07,6;UBERON:0001178,1.25e-07,6;UBERON:0002100,2.40e-07,199 | |||
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| |||
|short_description=p@chr20:35177479..35177514,+ | |||
}} |
Revision as of 08:18, 12 September 2013
Short description: | p@chr20:35177479..35177514, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr20:35177479..35177514, + |
Coexpression cluster: | C384_Adipocyte_smooth_bladder_left_aorta_Osteoblast_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 4.59e-12 | 43 |
smooth muscle myoblast | 4.59e-12 | 43 |
fat cell | 4.31e-10 | 15 |
fibroblast | 4.54e-10 | 76 |
preadipocyte | 2.60e-09 | 12 |
muscle precursor cell | 4.16e-09 | 58 |
myoblast | 4.16e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.16e-09 | 58 |
vascular associated smooth muscle cell | 4.99e-09 | 32 |
muscle cell | 1.03e-08 | 55 |
electrically responsive cell | 5.10e-07 | 61 |
electrically active cell | 5.10e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
muscle tissue | 7.66e-10 | 64 |
musculature | 7.66e-10 | 64 |
musculature of body | 7.66e-10 | 64 |
trunk mesenchyme | 1.35e-09 | 122 |
dense mesenchyme tissue | 8.53e-09 | 73 |
skeletal muscle tissue | 8.54e-09 | 62 |
striated muscle tissue | 8.54e-09 | 62 |
myotome | 8.54e-09 | 62 |
mesenchyme | 8.56e-09 | 160 |
entire embryonic mesenchyme | 8.56e-09 | 160 |
epithelial vesicle | 1.01e-08 | 78 |
somite | 1.40e-08 | 71 |
presomitic mesoderm | 1.40e-08 | 71 |
presumptive segmental plate | 1.40e-08 | 71 |
dermomyotome | 1.40e-08 | 71 |
trunk paraxial mesoderm | 1.40e-08 | 71 |
paraxial mesoderm | 2.54e-08 | 72 |
presumptive paraxial mesoderm | 2.54e-08 | 72 |
omentum | 1.25e-07 | 6 |
peritoneum | 1.25e-07 | 6 |
abdominal cavity | 1.25e-07 | 6 |
visceral peritoneum | 1.25e-07 | 6 |
trunk | 2.40e-07 | 199 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.