FFCP PHASE1:Hg19::chr1:56984960..56984963,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:56984960..56984963,+|id=chr1:56984960..56984963,+|ontology_enrichment_celltype=CL:0002057!1.63e-11!42;CL:0000860!1.01e-10!45;CL:0000055!9.58e-10!180;CL:0000557!1.26e-08!71;CL:0000839!2.53e-08!70;CL:0002371!4.66e-08!591;CL:0000144!8.21e-08!625;CL:0000766!1.99e-07!76;CL:0002009!3.70e-07!65;CL:0002194!3.95e-07!63;CL:0000576!3.95e-07!63;CL:0000040!3.95e-07!63;CL:0000559!3.95e-07!63;CL:0000057!4.75e-07!75|ontology_enrichment_celltype_v019=CL:0000860;1.68e-08;33!CL:0002057;1.68e-08;33!CL:0000342;5.03e-08;1!CL:0002565;5.03e-08;1!CL:0002591;5.03e-08;1!CL:0000306;8.11e-08;4!CL:0002222;8.11e-08;4!CL:0002224;8.11e-08;4!CL:1000306;1.30e-07;4!CL:0002547;1.30e-07;4!CL:0000473;1.71e-07;39!CL:0000234;1.71e-07;39|ontology_enrichment_celltype_v019_2=CL:0000839,2.02e-08,66;CL:0000557,2.84e-08,67;CL:0000342,3.58e-08,1;CL:0002565,3.58e-08,1;CL:0000306,6.65e-08,4;CL:0002222,6.65e-08,4;CL:0002224,6.65e-08,4;CL:0000473,6.83e-08,48;CL:0000234,6.83e-08,48;CL:0002591,7.10e-08,1;CL:1000306,1.26e-07,4;CL:0002547,1.26e-07,4;CL:0000766,1.36e-07,72;CL:0000860,4.30e-07,42;CL:0002057,4.30e-07,42|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002204!1.58e-10!167;UBERON:0004765!1.29e-09!101;UBERON:0001434!1.29e-09!101;UBERON:0002371!1.49e-09!80;UBERON:0001474!1.54e-08!86;UBERON:0002193!7.36e-08!112;UBERON:0002390!4.65e-07!102;UBERON:0003061!4.65e-07!102|ontology_enrichment_uberon_v019=UBERON:0002506;5.03e-08;1!UBERON:0001769;5.03e-08;1!UBERON:0001801;6.30e-08;14!UBERON:0010077;8.11e-08;4!UBERON:0005389;8.11e-08;4!UBERON:0000484;8.11e-08;4!UBERON:0000965;8.11e-08;4!UBERON:0001803;8.11e-08;4!UBERON:0004797;1.30e-07;4!UBERON:0000415;1.30e-07;4!UBERON:0007240;1.30e-07;4!UBERON:0005742;1.30e-07;4!UBERON:0005734;1.30e-07;4!UBERON:0004664;1.30e-07;4!UBERON:0004663;1.30e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.09e-08,76;UBERON:0002506,3.58e-08,1;UBERON:0001769,3.58e-08,1;UBERON:0001801,6.33e-08,14;UBERON:0001474,6.39e-08,82;UBERON:0010077,6.65e-08,4;UBERON:0005389,6.65e-08,4;UBERON:0000484,6.65e-08,4;UBERON:0002546,6.65e-08,4;UBERON:0000965,6.65e-08,4;UBERON:0001803,6.65e-08,4;UBERON:0003073,6.65e-08,4;UBERON:0005426,6.65e-08,4;UBERON:0000415,1.26e-07,4;UBERON:0007240,1.26e-07,4;UBERON:0005742,1.26e-07,4;UBERON:0005734,1.26e-07,4;UBERON:0004664,1.26e-07,4;UBERON:0004663,1.26e-07,4;UBERON:0004765,4.69e-07,90;UBERON:0002405,9.05e-07,93|phase1_expression=0.363356758541113,0,0.422863212287913,0,0,0,0,0,0,0,0,0,0,0.618831764800233,0,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0.123121058076788,0,0.940364164434263,0.286235987131057,0.273748850145768,0.125542639594803,0,0,0,0,0,0.464448369948228,0,0.30120591877825,0,0,0,0.293600439334847,0,0.200544447470142,0.434021741431704,0,0,0,0.290796477559129,0.377875943688809,0.970336244751265,0.929716147622738,0,0.619412741790207,0,0.512321413058201,0.709446689665756,0.344745680736619,0,1.35426486594342,0,0,0.224723484445085,1.83650335422542,0.641858054152187,1.91801137739712,0.329851300186716,0.997318288108159,0.426224750532694,0.580418477257168,3.40431134814684,1.24564449799115,0.502497330513487,1.0429658368404,0,0.605399502633369,1.10483290796269,0.949387162322653,0,0,0.209658645508376,0,0,0.16072558669708,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0.221533894583621,0.270803863765016,0.128091319725675,0.260118695119756,0.328875809207352,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,0,0,0.144846518960824,0,0.486634870302636,0.567208902984407,0,0.087834785693126,0,0,0,0,0.348259474598534,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0,0.516833518338658,0,0,0,0.760272105718513,1.22031028774085,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0.379891534993739,1.32409180813219,1.14734648299525,0,0,0,0,0,0,0,0.151357427644931,0,0,0.936480230490962,0,0.747243402759005,0.23486899728753,0.161872944368132,0,0.408308342509787,0,0.413303124703062,0,0.494533858557114,0.910161361938026,0.718618141816238,0.505008341862199,0.375355559615893,0,0.438977620880838,0,0.300476117813194,0,1.61450672119976,0,0,0.600182192168805,0,0.515281080091258,0,3.88185564154912,0.194874010322397,0.757301322732344,0.0920498986422993,0.323292113637624,1.06502877754984,0.201504196455281,0.67824236924195,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,1.3725424823882,0.109750285408626,0,0,0,0,1.03993478527958,0,2.31860809950154,1.40890433082986,0.288732895522148,0,0.380508304469197,0,0,0,0,0.297262324577456,0,0.503946384596579,0.141775097242386,0.179117045405697,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:56984960..56984963,+ | |||
|id=chr1:56984960..56984963,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.63e-11!42;CL:0000860!1.01e-10!45;CL:0000055!9.58e-10!180;CL:0000557!1.26e-08!71;CL:0000839!2.53e-08!70;CL:0002371!4.66e-08!591;CL:0000144!8.21e-08!625;CL:0000766!1.99e-07!76;CL:0002009!3.70e-07!65;CL:0002194!3.95e-07!63;CL:0000576!3.95e-07!63;CL:0000040!3.95e-07!63;CL:0000559!3.95e-07!63;CL:0000057!4.75e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.68e-08;33!CL:0002057;1.68e-08;33!CL:0000342;5.03e-08;1!CL:0002565;5.03e-08;1!CL:0002591;5.03e-08;1!CL:0000306;8.11e-08;4!CL:0002222;8.11e-08;4!CL:0002224;8.11e-08;4!CL:1000306;1.30e-07;4!CL:0002547;1.30e-07;4!CL:0000473;1.71e-07;39!CL:0000234;1.71e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,2.02e-08,66;CL:0000557,2.84e-08,67;CL:0000342,3.58e-08,1;CL:0002565,3.58e-08,1;CL:0000306,6.65e-08,4;CL:0002222,6.65e-08,4;CL:0002224,6.65e-08,4;CL:0000473,6.83e-08,48;CL:0000234,6.83e-08,48;CL:0002591,7.10e-08,1;CL:1000306,1.26e-07,4;CL:0002547,1.26e-07,4;CL:0000766,1.36e-07,72;CL:0000860,4.30e-07,42;CL:0002057,4.30e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.58e-10!167;UBERON:0004765!1.29e-09!101;UBERON:0001434!1.29e-09!101;UBERON:0002371!1.49e-09!80;UBERON:0001474!1.54e-08!86;UBERON:0002193!7.36e-08!112;UBERON:0002390!4.65e-07!102;UBERON:0003061!4.65e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0002506;5.03e-08;1!UBERON:0001769;5.03e-08;1!UBERON:0001801;6.30e-08;14!UBERON:0010077;8.11e-08;4!UBERON:0005389;8.11e-08;4!UBERON:0000484;8.11e-08;4!UBERON:0000965;8.11e-08;4!UBERON:0001803;8.11e-08;4!UBERON:0004797;1.30e-07;4!UBERON:0000415;1.30e-07;4!UBERON:0007240;1.30e-07;4!UBERON:0005742;1.30e-07;4!UBERON:0005734;1.30e-07;4!UBERON:0004664;1.30e-07;4!UBERON:0004663;1.30e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.09e-08,76;UBERON:0002506,3.58e-08,1;UBERON:0001769,3.58e-08,1;UBERON:0001801,6.33e-08,14;UBERON:0001474,6.39e-08,82;UBERON:0010077,6.65e-08,4;UBERON:0005389,6.65e-08,4;UBERON:0000484,6.65e-08,4;UBERON:0002546,6.65e-08,4;UBERON:0000965,6.65e-08,4;UBERON:0001803,6.65e-08,4;UBERON:0003073,6.65e-08,4;UBERON:0005426,6.65e-08,4;UBERON:0000415,1.26e-07,4;UBERON:0007240,1.26e-07,4;UBERON:0005742,1.26e-07,4;UBERON:0005734,1.26e-07,4;UBERON:0004664,1.26e-07,4;UBERON:0004663,1.26e-07,4;UBERON:0004765,4.69e-07,90;UBERON:0002405,9.05e-07,93 | |||
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| |||
|short_description=p@chr1:56984960..56984963,+ | |||
}} |
Revision as of 06:13, 12 September 2013
Short description: | p@chr1:56984960..56984963, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:56984960..56984963, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 2.02e-08 | 66 |
granulocyte monocyte progenitor cell | 2.84e-08 | 67 |
pigment cell (sensu Vertebrata) | 3.58e-08 | 1 |
iris pigment epithelial cell | 3.58e-08 | 1 |
crystallin accumulating cell | 6.65e-08 | 4 |
vertebrate lens cell | 6.65e-08 | 4 |
lens epithelial cell | 6.65e-08 | 4 |
defensive cell | 6.83e-08 | 48 |
phagocyte | 6.83e-08 | 48 |
smooth muscle cell of the pulmonary artery | 7.10e-08 | 1 |
fibroblast of tunica adventitia of artery | 1.26e-07 | 4 |
fibroblast of the aortic adventitia | 1.26e-07 | 4 |
myeloid leukocyte | 1.36e-07 | 72 |
classical monocyte | 4.30e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.30e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.09e-08 | 76 |
iris epithelium | 3.58e-08 | 1 |
iris | 3.58e-08 | 1 |
anterior segment of eyeball | 6.33e-08 | 14 |
bone element | 6.39e-08 | 82 |
cuboidal epithelium | 6.65e-08 | 4 |
transparent eye structure | 6.65e-08 | 4 |
simple cuboidal epithelium | 6.65e-08 | 4 |
cranial placode | 6.65e-08 | 4 |
lens of camera-type eye | 6.65e-08 | 4 |
epithelium of lens | 6.65e-08 | 4 |
lens placode | 6.65e-08 | 4 |
lens vesicle | 6.65e-08 | 4 |
artery wall | 1.26e-07 | 4 |
tunica adventitia of artery | 1.26e-07 | 4 |
adventitia | 1.26e-07 | 4 |
tunica adventitia of blood vessel | 1.26e-07 | 4 |
aorta tunica adventitia | 1.26e-07 | 4 |
aorta wall | 1.26e-07 | 4 |
skeletal element | 4.69e-07 | 90 |
immune system | 9.05e-07 | 93 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.